data_4S7
#

_chem_comp.id                                   4S7
_chem_comp.name                                 "1-{3-[(R)-hydroxy(octadecyloxy)phosphoryl]propyl}triaza-1,2-dien-2-ium"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H45 N3 O3 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "octadecyl hydrogen (R)-(3-azidopropyl)phosphonate"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2015-05-20
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       418.574
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4S7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4ZXF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4S7  C2   C1   C  0  1  N  N  N    3.562  48.644  -12.530    9.905   0.043   0.200  C2   4S7   1  
4S7  C9   C2   C  0  1  N  N  N   -0.992  51.863  -19.130   -1.618   0.192   0.269  C9   4S7   2  
4S7  C10  C3   C  0  1  N  N  N   -1.742  51.016  -20.099   -2.889  -0.506  -0.217  C10  4S7   3  
4S7  C4   C4   C  0  1  N  N  N    0.726  48.173  -14.970    4.601  -0.776  -0.159  C4   4S7   4  
4S7  C3   C5   C  0  1  N  N  N    3.817  49.995  -11.963   10.943   1.038   0.721  C3   4S7   5  
4S7  C8   C6   C  0  1  N  N  N    0.103  51.067  -18.536   -0.393  -0.596  -0.198  C8   4S7   6  
4S7  C7   C7   C  0  1  N  N  N   -0.337  50.535  -17.230    0.879   0.102   0.289  C7   4S7   7  
4S7  C6   C8   C  0  1  N  N  N    0.854  50.091  -16.473    2.104  -0.686  -0.178  C6   4S7   8  
4S7  C5   C9   C  0  1  N  N  N    0.933  48.606  -16.380    3.376   0.013   0.308  C5   4S7   9  
4S7  P1   P1   P  0  1  N  N  N    1.878  46.684  -13.222    7.267  -0.679  -0.015  P1   4S7  10  
4S7  C1   C10  C  0  1  N  N  N    2.117  48.286  -12.393    8.505   0.508   0.604  C1   4S7  11  
4S7  O2   O1   O  0  1  N  N  N    3.305  46.254  -13.548    7.435  -0.848  -1.476  O2   4S7  12  
4S7  O3   O2   O  0  1  N  N  N    1.558  47.118  -14.681    5.788  -0.123   0.295  O3   4S7  13  
4S7  N1   N1   N  0  1  N  N  N    4.097  50.941  -13.000   12.284   0.593   0.334  N1   4S7  14  
4S7  N2   N2   N  1  1  N  N  N    5.269  51.074  -13.293   12.930   1.249  -0.311  N2   4S7  15  
4S7  N3   N3   N  0  1  N  N  N    6.460  51.140  -13.544   13.576   1.905  -0.956  N3   4S7  16  
4S7  C11  C11  C  0  1  N  N  N   -2.576  51.859  -20.987   -4.115   0.282   0.250  C11  4S7  17  
4S7  C12  C12  C  0  1  N  N  N   -4.009  51.558  -20.805   -5.386  -0.417  -0.236  C12  4S7  18  
4S7  C13  C13  C  0  1  N  N  N   -4.758  52.811  -20.605   -6.612   0.372   0.231  C13  4S7  19  
4S7  C14  C14  C  0  1  N  N  N   -5.964  52.792  -21.451   -7.883  -0.327  -0.255  C14  4S7  20  
4S7  C15  C15  C  0  1  N  N  N   -7.046  53.496  -20.746   -9.108   0.461   0.212  C15  4S7  21  
4S7  C16  C16  C  0  1  N  N  N   -8.266  53.250  -21.526  -10.380  -0.237  -0.274  C16  4S7  22  
4S7  C17  C17  C  0  1  N  N  N   -8.531  51.809  -21.596  -11.605   0.551   0.193  C17  4S7  23  
4S7  C18  C18  C  0  1  N  N  N   -9.824  51.606  -22.280  -12.877  -0.147  -0.294  C18  4S7  24  
4S7  C19  C19  C  0  1  N  N  N  -10.144  50.167  -22.423  -14.102   0.641   0.174  C19  4S7  25  
4S7  C20  C20  C  0  1  N  N  N   -9.081  49.504  -23.216  -15.373  -0.058  -0.313  C20  4S7  26  
4S7  C21  C21  C  0  1  N  N  N   -9.663  48.504  -24.144  -16.599   0.731   0.154  C21  4S7  27  
4S7  H1   H1   H  0  1  N  N  N    4.172  47.904  -11.991    9.969  -0.015  -0.886  H1   4S7  28  
4S7  H2   H2   H  0  1  N  N  N    3.837  48.640  -13.595   10.099  -0.941   0.629  H2   4S7  29  
4S7  H3   H3   H  0  1  N  N  N   -0.572  52.735  -19.652   -1.579   1.201  -0.140  H3   4S7  30  
4S7  H4   H4   H  0  1  N  N  N   -1.672  52.204  -18.336   -1.625   0.242   1.358  H4   4S7  31  
4S7  H5   H5   H  0  1  N  N  N   -2.391  50.321  -19.546   -2.883  -0.556  -1.306  H5   4S7  32  
4S7  H6   H6   H  0  1  N  N  N   -1.027  50.444  -20.709   -2.929  -1.516   0.193  H6   4S7  33  
4S7  H7   H7   H  0  1  N  N  N    0.950  49.011  -14.294    4.562  -1.785   0.250  H7   4S7  34  
4S7  H8   H8   H  0  1  N  N  N   -0.320  47.861  -14.833    4.608  -0.826  -1.248  H8   4S7  35  
4S7  H9   H9   H  0  1  N  N  N    4.679  49.942  -11.281   10.750   2.022   0.293  H9   4S7  36  
4S7  H10  H10  H  0  1  N  N  N    2.928  50.325  -11.405   10.879   1.096   1.807  H10  4S7  37  
4S7  H11  H11  H  0  1  N  N  N    0.357  50.233  -19.206   -0.432  -1.605   0.212  H11  4S7  38  
4S7  H12  H12  H  0  1  N  N  N    0.987  51.706  -18.394   -0.386  -0.646  -1.286  H12  4S7  39  
4S7  H13  H13  H  0  1  N  N  N   -0.861  51.322  -16.667    0.918   1.112  -0.121  H13  4S7  40  
4S7  H14  H14  H  0  1  N  N  N   -1.015  49.683  -17.387    0.872   0.152   1.377  H14  4S7  41  
4S7  H15  H15  H  0  1  N  N  N    1.756  50.464  -16.980    2.065  -1.695   0.231  H15  4S7  42  
4S7  H16  H16  H  0  1  N  N  N    0.805  50.509  -15.457    2.111  -0.736  -1.267  H16  4S7  43  
4S7  H17  H17  H  0  1  N  N  N    0.155  48.159  -17.016    3.369   0.062   1.397  H17  4S7  44  
4S7  H18  H18  H  0  1  N  N  N    1.923  48.272  -16.722    3.415   1.022  -0.102  H18  4S7  45  
4S7  H19  H19  H  0  1  N  N  N    1.492  49.054  -12.871    8.440   0.566   1.691  H19  4S7  46  
4S7  H20  H20  H  0  1  N  N  N    1.848  48.204  -11.329    8.311   1.492   0.176  H20  4S7  47  
4S7  H22  H22  H  0  1  N  N  N    6.973  50.390  -13.126   13.536   1.826  -1.922  H22  4S7  48  
4S7  H23  H23  H  0  1  N  N  N   -2.297  51.665  -22.033   -4.121   0.332   1.339  H23  4S7  49  
4S7  H24  H24  H  0  1  N  N  N   -2.398  52.918  -20.750   -4.075   1.291  -0.159  H24  4S7  50  
4S7  H25  H25  H  0  1  N  N  N   -4.391  51.042  -21.699   -5.380  -0.466  -1.325  H25  4S7  51  
4S7  H26  H26  H  0  1  N  N  N   -4.138  50.911  -19.925   -5.426  -1.426   0.174  H26  4S7  52  
4S7  H27  H27  H  0  1  N  N  N   -4.126  53.667  -20.884   -6.618   0.421   1.320  H27  4S7  53  
4S7  H28  H28  H  0  1  N  N  N   -5.051  52.901  -19.548   -6.572   1.381  -0.179  H28  4S7  54  
4S7  H29  H29  H  0  1  N  N  N   -6.264  51.752  -21.645   -7.877  -0.377  -1.344  H29  4S7  55  
4S7  H30  H30  H  0  1  N  N  N   -5.754  53.297  -22.406   -7.923  -1.336   0.154  H30  4S7  56  
4S7  H31  H31  H  0  1  N  N  N   -6.833  54.574  -20.699   -9.115   0.511   1.301  H31  4S7  57  
4S7  H32  H32  H  0  1  N  N  N   -7.158  53.100  -19.726   -9.069   1.471  -0.198  H32  4S7  58  
4S7  H33  H33  H  0  1  N  N  N   -8.135  53.647  -22.544  -10.373  -0.287  -1.363  H33  4S7  59  
4S7  H34  H34  H  0  1  N  N  N   -9.116  53.754  -21.043  -10.419  -1.246   0.135  H34  4S7  60  
4S7  H35  H35  H  0  1  N  N  N   -8.578  51.390  -20.580  -11.612   0.601   1.281  H35  4S7  61  
4S7  H36  H36  H  0  1  N  N  N   -7.729  51.311  -22.161  -11.566   1.561  -0.217  H36  4S7  62  
4S7  H37  H37  H  0  1  N  N  N   -9.775  52.062  -23.280  -12.870  -0.197  -1.382  H37  4S7  63  
4S7  H38  H38  H  0  1  N  N  N  -10.618  52.092  -21.694  -12.916  -1.157   0.116  H38  4S7  64  
4S7  H39  H39  H  0  1  N  N  N  -11.110  50.055  -22.937  -14.108   0.691   1.262  H39  4S7  65  
4S7  H40  H40  H  0  1  N  N  N  -10.203  49.703  -21.427  -14.062   1.650  -0.236  H40  4S7  66  
4S7  H41  H41  H  0  1  N  N  N   -8.383  48.998  -22.532  -15.367  -0.107  -1.402  H41  4S7  67  
4S7  H42  H42  H  0  1  N  N  N   -8.538  50.263  -23.798  -15.413  -1.067   0.097  H42  4S7  68  
4S7  H43  H43  H  0  1  N  N  N   -8.858  48.026  -24.721  -17.505   0.233  -0.192  H43  4S7  69  
4S7  H44  H44  H  0  1  N  N  N  -10.204  47.740  -23.567  -16.605   0.780   1.243  H44  4S7  70  
4S7  H45  H45  H  0  1  N  N  N  -10.359  49.005  -24.833  -16.559   1.740  -0.255  H45  4S7  71  
4S7  O1   O3   O  0  1  N  N  N        ?       ?        ?    7.472  -2.098   0.716  O1   4S7  72  
4S7  H21  H21  H  0  1  N  N  N        ?       ?        ?    7.376  -2.063   1.678  H21  4S7  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4S7  C21  C20  SING  N  N   1  
4S7  C20  C19  SING  N  N   2  
4S7  C19  C18  SING  N  N   3  
4S7  C18  C17  SING  N  N   4  
4S7  C17  C16  SING  N  N   5  
4S7  C16  C15  SING  N  N   6  
4S7  C14  C15  SING  N  N   7  
4S7  C14  C13  SING  N  N   8  
4S7  C11  C12  SING  N  N   9  
4S7  C11  C10  SING  N  N  10  
4S7  C12  C13  SING  N  N  11  
4S7  C10  C9   SING  N  N  12  
4S7  C9   C8   SING  N  N  13  
4S7  C8   C7   SING  N  N  14  
4S7  C7   C6   SING  N  N  15  
4S7  C6   C5   SING  N  N  16  
4S7  C5   C4   SING  N  N  17  
4S7  C4   O3   SING  N  N  18  
4S7  O3   P1   SING  N  N  19  
4S7  O2   P1   DOUB  N  N  20  
4S7  N3   N2   DOUB  N  N  21  
4S7  N2   N1   DOUB  N  N  22  
4S7  P1   C1   SING  N  N  23  
4S7  N1   C3   SING  N  N  24  
4S7  C2   C1   SING  N  N  25  
4S7  C2   C3   SING  N  N  26  
4S7  C2   H1   SING  N  N  27  
4S7  C2   H2   SING  N  N  28  
4S7  C9   H3   SING  N  N  29  
4S7  C9   H4   SING  N  N  30  
4S7  C10  H5   SING  N  N  31  
4S7  C10  H6   SING  N  N  32  
4S7  C4   H7   SING  N  N  33  
4S7  C4   H8   SING  N  N  34  
4S7  C3   H9   SING  N  N  35  
4S7  C3   H10  SING  N  N  36  
4S7  C8   H11  SING  N  N  37  
4S7  C8   H12  SING  N  N  38  
4S7  C7   H13  SING  N  N  39  
4S7  C7   H14  SING  N  N  40  
4S7  C6   H15  SING  N  N  41  
4S7  C6   H16  SING  N  N  42  
4S7  C5   H17  SING  N  N  43  
4S7  C5   H18  SING  N  N  44  
4S7  C1   H19  SING  N  N  45  
4S7  C1   H20  SING  N  N  46  
4S7  N3   H22  SING  N  N  47  
4S7  C11  H23  SING  N  N  48  
4S7  C11  H24  SING  N  N  49  
4S7  C12  H25  SING  N  N  50  
4S7  C12  H26  SING  N  N  51  
4S7  C13  H27  SING  N  N  52  
4S7  C13  H28  SING  N  N  53  
4S7  C14  H29  SING  N  N  54  
4S7  C14  H30  SING  N  N  55  
4S7  C15  H31  SING  N  N  56  
4S7  C15  H32  SING  N  N  57  
4S7  C16  H33  SING  N  N  58  
4S7  C16  H34  SING  N  N  59  
4S7  C17  H35  SING  N  N  60  
4S7  C17  H36  SING  N  N  61  
4S7  C18  H37  SING  N  N  62  
4S7  C18  H38  SING  N  N  63  
4S7  C19  H39  SING  N  N  64  
4S7  C19  H40  SING  N  N  65  
4S7  C20  H41  SING  N  N  66  
4S7  C20  H42  SING  N  N  67  
4S7  C21  H43  SING  N  N  68  
4S7  C21  H44  SING  N  N  69  
4S7  C21  H45  SING  N  N  70  
4S7  P1   O1   SING  N  N  71  
4S7  O1   H21  SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4S7  SMILES            ACDLabs               12.01  "C(CP(O)(=O)OCCCCCCCCCCCCCCCCCC)C\N=[N+]=N"  
4S7  InChI             InChI                 1.03   "InChI=1S/C21H44N3O3P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-20-27-28(25,26)21-18-19-23-24-22/h22H,2-21H2,1H3/p+1"  
4S7  InChIKey          InChI                 1.03   ZBOFNSYOCJATLZ-UHFFFAOYSA-O  
4S7  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCCCCCCCCCCCCO[P](O)(=O)CCCN=[N+]=N"  
4S7  SMILES            CACTVS                3.385  "CCCCCCCCCCCCCCCCCCO[P](O)(=O)CCCN=[N+]=N"  
4S7  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CCCCCCCCCCCCCCCCCCOP(=O)(CCCN=[N+]=N)O"  
4S7  SMILES            "OpenEye OEToolkits"  1.9.2  "CCCCCCCCCCCCCCCCCCOP(=O)(CCCN=[N+]=N)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4S7  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-{3-[(R)-hydroxy(octadecyloxy)phosphoryl]propyl}triaza-1,2-dien-2-ium"  
4S7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "azanylidene-[3-[octadecoxy(oxidanyl)phosphoryl]propylimino]azanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4S7  "Create component"    2015-05-20  EBI   
4S7  "Initial release"     2016-05-25  RCSB  
4S7  "Other modification"  2019-09-04  EBI   
4S7  "Modify synonyms"     2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     4S7
_pdbx_chem_comp_synonyms.name        "octadecyl hydrogen (R)-(3-azidopropyl)phosphonate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
