data_4R7
#

_chem_comp.id                                   4R7
_chem_comp.name                                 "methyl 6-[4-[[N-[2-[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H36 N10 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-07-07
_chem_comp.pdbx_modified_date                   2022-04-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       636.659
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4R7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7P2R
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4R7  C1   C1   C  0  1  Y  N  N  11.297  33.811  53.116  -12.893  -0.580  -0.551  C1   4R7   1  
4R7  C2   C2   C  0  1  Y  N  N  12.106  32.871  53.754  -12.540  -1.611   0.339  C2   4R7   2  
4R7  C3   C3   C  0  1  Y  N  N  11.602  31.647  54.109  -11.292  -1.664   0.883  C3   4R7   3  
4R7  C5   C4   C  0  1  Y  N  N   9.435  32.253  53.156  -10.686   0.366  -0.341  C5   4R7   4  
4R7  C6   C5   C  0  1  Y  N  N   9.989  33.510  52.820  -11.976   0.403  -0.891  C6   4R7   5  
4R7  N7   N1   N  0  1  Y  N  N   6.005  30.578  57.014   10.129  -2.736  -1.216  N7   4R7   6  
4R7  C8   C6   C  0  1  Y  N  N   8.354  29.773  53.919   -8.138   0.268   0.763  C8   4R7   7  
4R7  N9   N2   N  0  1  Y  N  N   6.007  33.946  58.570   13.443  -2.817   0.365  N9   4R7   8  
4R7  C10  C7   C  0  1  Y  N  N   8.087  31.922  52.878   -9.734   1.350  -0.666  C10  4R7   9  
4R7  C12  C8   C  0  1  N  N  N  10.605  37.086  52.977  -16.458  -1.409  -1.419  C12  4R7  10  
4R7  C13  C9   C  0  1  N  N  N   6.836  27.782  53.894   -5.797   0.637   0.572  C13  4R7  11  
4R7  C15  C10  C  0  1  N  N  N   4.615  25.231  54.212   -2.110   0.716   1.048  C15  4R7  12  
4R7  C16  C11  C  0  1  N  N  N   3.656  24.297  54.945   -0.913   1.171   0.211  C16  4R7  13  
4R7  C17  C12  C  0  1  N  N  N   0.353  25.999  55.148    2.800   1.247   0.697  C17  4R7  14  
4R7  C18  C13  C  0  1  N  N  N   0.214  29.700  54.580    6.238   2.053  -0.549  C18  4R7  15  
4R7  C20  C14  C  0  1  N  N  S   2.010  30.778  53.032    8.677   2.557  -0.959  C20  4R7  16  
4R7  C22  C15  C  0  1  N  N  R   3.228  31.643  54.893    9.482   0.534   0.134  C22  4R7  17  
4R7  C24  C16  C  0  1  Y  N  N   5.802  31.882  57.437   11.297  -2.555  -0.553  C24  4R7  18  
4R7  C26  C17  C  0  1  Y  N  N   5.029  34.396  57.778   13.339  -1.624   0.920  C26  4R7  19  
4R7  C27  C18  C  0  1  Y  N  N   4.791  32.483  56.704   11.233  -1.292   0.060  C27  4R7  20  
4R7  C29  C19  C  0  1  N  N  N   0.903  28.349  54.662    5.234   1.529   0.480  C29  4R7  21  
4R7  C11  C20  C  0  1  N  N  N  11.892  35.128  52.763  -14.249  -0.548  -1.132  C11  4R7  22  
4R7  C14  C21  C  0  1  N  N  N   5.228  26.334  55.053   -3.401   0.956   0.263  C14  4R7  23  
4R7  C19  C22  C  0  1  N  N  R   1.185  30.839  54.325    7.656   1.920   0.010  C19  4R7  24  
4R7  C21  C23  C  0  1  N  N  R   3.455  31.072  53.495    9.906   1.624  -0.875  C21  4R7  25  
4R7  C23  C24  C  0  1  Y  N  N   5.121  30.420  56.057    9.372  -1.691  -1.053  C23  4R7  26  
4R7  C25  C25  C  0  1  Y  N  N   6.427  32.670  58.424   12.460  -3.322  -0.373  C25  4R7  27  
4R7  C28  C26  C  0  1  N  N  N   2.533  24.996  55.681    0.379   0.930   0.996  C28  4R7  28  
4R7  C4   C27  C  0  1  Y  N  N  10.251  31.295  53.819  -10.338  -0.676   0.555  C4   4R7  29  
4R7  C7   C28  C  0  1  Y  N  N   9.675  30.054  54.181   -9.048  -0.710   1.103  C7   4R7  30  
4R7  C9   C29  C  0  1  Y  N  N   7.572  30.717  53.255   -8.490   1.294  -0.122  C9   4R7  31  
4R7  N1   N3   N  0  1  N  N  N   7.843  28.549  54.415   -6.852   0.236   1.309  N1   4R7  32  
4R7  N10  N4   N  0  1  Y  N  N   4.358  33.743  56.825   12.268  -0.871   0.780  N10  4R7  33  
4R7  N2   N5   N  0  1  N  N  N   6.574  26.668  54.610   -4.548   0.520   1.064  N2   4R7  34  
4R7  N3   N6   N  0  1  N  N  N   1.579  25.620  54.775    1.525   1.366   0.195  N3   4R7  35  
4R7  N4   N7   N  0  1  N  N  N  -0.035  27.260  54.905    3.876   1.656  -0.055  N4   4R7  36  
4R7  N5   N8   N  0  1  N  N  N  -0.474  25.214  55.743    2.988   0.747   1.886  N5   4R7  37  
4R7  N6   N9   N  0  1  Y  N  N   4.346  31.525  55.823   10.009  -0.771  -0.273  N6   4R7  38  
4R7  N8   N10  N  0  1  N  N  N   7.403  32.230  59.219   12.580  -4.573  -0.953  N8   4R7  39  
4R7  O1   O1   O  0  1  N  N  N  12.329  30.719  54.782  -10.967  -2.665   1.742  O1   4R7  40  
4R7  O2   O2   O  0  1  N  N  N  11.014  35.944  52.186  -15.143  -1.503  -0.810  O2   4R7  41  
4R7  O3   O3   O  0  1  N  N  N  13.042  35.430  52.960  -14.560   0.340  -1.901  O3   4R7  42  
4R7  O4   O4   O  0  1  N  N  N   6.220  28.068  52.871   -5.972   1.104  -0.537  O4   4R7  43  
4R7  O5   O5   O  0  1  N  N  N   1.532  31.763  52.125    9.020   3.876  -0.529  O5   4R7  44  
4R7  O6   O6   O  0  1  N  N  N   4.095  32.032  52.663   11.045   2.338  -0.391  O6   4R7  45  
4R7  O7   O7   O  0  1  N  N  N   2.142  30.906  55.400    8.038   0.530   0.087  O7   4R7  46  
4R7  H1   H1   H  0  1  N  N  N  13.137  33.109  53.970  -13.266  -2.368   0.594  H1   4R7  47  
4R7  H2   H2   H  0  1  N  N  N   9.374  34.246  52.323  -12.253   1.191  -1.575  H2   4R7  48  
4R7  H3   H3   H  0  1  N  N  N   7.459  32.632  52.361   -9.990   2.147  -1.348  H3   4R7  49  
4R7  H4   H4   H  0  1  N  N  N   9.883  37.688  52.406  -16.923  -0.465  -1.135  H4   4R7  50  
4R7  H5   H5   H  0  1  N  N  N  10.136  36.737  53.909  -16.359  -1.453  -2.504  H5   4R7  51  
4R7  H6   H6   H  0  1  N  N  N  11.486  37.700  53.217  -17.078  -2.237  -1.076  H6   4R7  52  
4R7  H7   H7   H  0  1  N  N  N   5.435  24.622  53.804   -2.014  -0.347   1.272  H7   4R7  53  
4R7  H8   H8   H  0  1  N  N  N   4.062  25.703  53.386   -2.139   1.283   1.978  H8   4R7  54  
4R7  H9   H9   H  0  1  N  N  N   3.210  23.615  54.206   -0.883   0.604  -0.719  H9   4R7  55  
4R7  H10  H10  H  0  1  N  N  N   4.236  23.716  55.677   -1.009   2.233  -0.013  H10  4R7  56  
4R7  H11  H11  H  0  1  N  N  N  -0.307  29.888  55.531    6.154   1.472  -1.467  H11  4R7  57  
4R7  H12  H12  H  0  1  N  N  N  -0.519  29.672  53.760    6.028   3.101  -0.761  H12  4R7  58  
4R7  H13  H13  H  0  1  N  N  N   1.955  29.768  52.599    8.280   2.576  -1.974  H13  4R7  59  
4R7  H14  H14  H  0  1  N  N  N   2.950  32.703  54.793    9.828   0.786   1.136  H14  4R7  60  
4R7  H15  H15  H  0  1  N  N  N   4.743  35.426  57.929   14.161  -1.252   1.513  H15  4R7  61  
4R7  H16  H16  H  0  1  N  N  N   1.425  28.160  53.712    5.444   0.481   0.692  H16  4R7  62  
4R7  H17  H17  H  0  1  N  N  N   1.634  28.375  55.483    5.318   2.110   1.398  H17  4R7  63  
4R7  H18  H18  H  0  1  N  N  N   4.596  27.231  54.979   -3.498   2.018   0.038  H18  4R7  64  
4R7  H19  H19  H  0  1  N  N  N   5.270  26.001  56.101   -3.372   0.389  -0.668  H19  4R7  65  
4R7  H20  H20  H  0  1  N  N  N   0.607  31.775  54.307    7.721   2.389   0.992  H20  4R7  66  
4R7  H21  H21  H  0  1  N  N  N   4.029  30.135  53.555   10.116   1.181  -1.849  H21  4R7  67  
4R7  H22  H22  H  0  1  N  N  N   5.014  29.499  55.503    8.385  -1.569  -1.474  H22  4R7  68  
4R7  H23  H23  H  0  1  N  N  N   2.965  25.773  56.329    0.349   1.497   1.926  H23  4R7  69  
4R7  H24  H24  H  0  1  N  N  N   2.002  24.257  56.299    0.475  -0.132   1.220  H24  4R7  70  
4R7  H25  H25  H  0  1  N  N  N  10.286  29.312  54.673   -8.768  -1.498   1.787  H25  4R7  71  
4R7  H26  H26  H  0  1  N  N  N   6.539  30.490  53.035   -7.763   2.052  -0.376  H26  4R7  72  
4R7  H27  H27  H  0  1  N  N  N   8.271  28.202  55.249   -6.718  -0.075   2.218  H27  4R7  73  
4R7  H28  H28  H  0  1  N  N  N   7.328  26.053  54.843   -4.408   0.148   1.949  H28  4R7  74  
4R7  H29  H29  H  0  1  N  N  N   1.855  25.773  53.826    1.385   1.739  -0.690  H29  4R7  75  
4R7  H30  H30  H  0  1  N  N  N  -1.014  27.462  54.890    3.736   2.029  -0.939  H30  4R7  76  
4R7  H31  H31  H  0  1  N  N  N  -1.338  25.671  55.955    3.887   0.663   2.240  H31  4R7  77  
4R7  H32  H32  H  0  1  N  N  N   7.687  32.963  59.837   11.856  -4.930  -1.490  H32  4R7  78  
4R7  H33  H33  H  0  1  N  N  N   7.072  31.453  59.754   13.389  -5.093  -0.822  H33  4R7  79  
4R7  H34  H34  H  0  1  N  N  N  11.798  29.945  54.929  -10.597  -3.448   1.311  H34  4R7  80  
4R7  H35  H35  H  0  1  N  N  N   0.644  31.549  51.864    9.703   4.300  -1.067  H35  4R7  81  
4R7  H36  H36  H  0  1  N  N  N   4.978  32.186  52.978   11.318   3.073  -0.957  H36  4R7  82  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4R7  O5   C20  SING  N  N   1  
4R7  O2   C11  SING  N  N   2  
4R7  O2   C12  SING  N  N   3  
4R7  O6   C21  SING  N  N   4  
4R7  C11  O3   DOUB  N  N   5  
4R7  C11  C1   SING  N  N   6  
4R7  C6   C1   SING  Y  N   7  
4R7  C6   C5   DOUB  Y  N   8  
4R7  O4   C13  DOUB  N  N   9  
4R7  C10  C5   SING  Y  N  10  
4R7  C10  C9   DOUB  Y  N  11  
4R7  C20  C21  SING  N  N  12  
4R7  C20  C19  SING  N  N  13  
4R7  C1   C2   DOUB  Y  N  14  
4R7  C5   C4   SING  Y  N  15  
4R7  C9   C8   SING  Y  N  16  
4R7  C21  C22  SING  N  N  17  
4R7  C2   C3   SING  Y  N  18  
4R7  C4   C3   DOUB  Y  N  19  
4R7  C4   C7   SING  Y  N  20  
4R7  C13  N1   SING  N  N  21  
4R7  C13  N2   SING  N  N  22  
4R7  C8   C7   DOUB  Y  N  23  
4R7  C8   N1   SING  N  N  24  
4R7  C3   O1   SING  N  N  25  
4R7  C15  C16  SING  N  N  26  
4R7  C15  C14  SING  N  N  27  
4R7  C19  C18  SING  N  N  28  
4R7  C19  O7   SING  N  N  29  
4R7  C18  C29  SING  N  N  30  
4R7  N2   C14  SING  N  N  31  
4R7  C29  N4   SING  N  N  32  
4R7  N3   C17  SING  N  N  33  
4R7  N3   C28  SING  N  N  34  
4R7  C22  O7   SING  N  N  35  
4R7  C22  N6   SING  N  N  36  
4R7  N4   C17  SING  N  N  37  
4R7  C16  C28  SING  N  N  38  
4R7  C17  N5   DOUB  N  N  39  
4R7  N6   C23  SING  Y  N  40  
4R7  N6   C27  SING  Y  N  41  
4R7  C23  N7   DOUB  Y  N  42  
4R7  C27  N10  DOUB  Y  N  43  
4R7  C27  C24  SING  Y  N  44  
4R7  N10  C26  SING  Y  N  45  
4R7  N7   C24  SING  Y  N  46  
4R7  C24  C25  DOUB  Y  N  47  
4R7  C26  N9   DOUB  Y  N  48  
4R7  C25  N9   SING  Y  N  49  
4R7  C25  N8   SING  N  N  50  
4R7  C2   H1   SING  N  N  51  
4R7  C6   H2   SING  N  N  52  
4R7  C10  H3   SING  N  N  53  
4R7  C12  H4   SING  N  N  54  
4R7  C12  H5   SING  N  N  55  
4R7  C12  H6   SING  N  N  56  
4R7  C15  H7   SING  N  N  57  
4R7  C15  H8   SING  N  N  58  
4R7  C16  H9   SING  N  N  59  
4R7  C16  H10  SING  N  N  60  
4R7  C18  H11  SING  N  N  61  
4R7  C18  H12  SING  N  N  62  
4R7  C20  H13  SING  N  N  63  
4R7  C22  H14  SING  N  N  64  
4R7  C26  H15  SING  N  N  65  
4R7  C29  H16  SING  N  N  66  
4R7  C29  H17  SING  N  N  67  
4R7  C14  H18  SING  N  N  68  
4R7  C14  H19  SING  N  N  69  
4R7  C19  H20  SING  N  N  70  
4R7  C21  H21  SING  N  N  71  
4R7  C23  H22  SING  N  N  72  
4R7  C28  H23  SING  N  N  73  
4R7  C28  H24  SING  N  N  74  
4R7  C7   H25  SING  N  N  75  
4R7  C9   H26  SING  N  N  76  
4R7  N1   H27  SING  N  N  77  
4R7  N2   H28  SING  N  N  78  
4R7  N3   H29  SING  N  N  79  
4R7  N4   H30  SING  N  N  80  
4R7  N5   H31  SING  N  N  81  
4R7  N8   H32  SING  N  N  82  
4R7  N8   H33  SING  N  N  83  
4R7  O1   H34  SING  N  N  84  
4R7  O5   H35  SING  N  N  85  
4R7  O6   H36  SING  N  N  86  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4R7  InChI             InChI                 1.03   "InChI=1S/C29H36N10O7/c1-45-27(43)16-10-15-4-5-17(12-18(15)19(40)11-16)38-29(44)34-8-3-2-7-32-28(31)33-9-6-20-22(41)23(42)26(46-20)39-14-37-21-24(30)35-13-36-25(21)39/h4-5,10-14,20,22-23,26,40-42H,2-3,6-9H2,1H3,(H2,30,35,36)(H3,31,32,33)(H2,34,38,44)/t20-,22-,23-,26-/m1/s1"  
4R7  InChIKey          InChI                 1.03   QVOKJKWHZRTVQQ-HUBRGWSESA-N  
4R7  SMILES_CANONICAL  CACTVS                3.385  "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NCC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)ccc2c1"  
4R7  SMILES            CACTVS                3.385  "COC(=O)c1cc(O)c2cc(NC(=O)NCCCCNC(=N)NCC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)ccc2c1"  
4R7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[H]/N=C(\NCCCCNC(=O)Nc1ccc2cc(cc(c2c1)O)C(=O)OC)/NCC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O"  
4R7  SMILES            "OpenEye OEToolkits"  2.0.7  "COC(=O)c1cc2ccc(cc2c(c1)O)NC(=O)NCCCCNC(=N)NCCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          4R7
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "methyl 6-[4-[[~{N}-[2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethyl]carbamimidoyl]amino]butylcarbamoylamino]-4-oxidanyl-naphthalene-2-carboxylate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4R7  "Create component"  2021-07-07  PDBE  
4R7  "Initial release"   2022-04-06  RCSB  
##
