data_4D7
#

_chem_comp.id                                   4D7
_chem_comp.name                                 "3-(1H-benzimidazol-2-yl)-N-[(2-methylfuran-3-yl)carbonyl]-D-alanine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H15 N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(R)-3-(1H-Benzoimidazol-2-yl)-2-[(2-methyl-furan-3-carbonyl)-amino]-propionic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-10-22
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       313.308
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4D7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3KAG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4D7  C1    C1    C  0  1  Y  N  N  -31.694  24.247  26.667   5.212   1.721   0.563  C1    4D7   1  
4D7  C2    C2    C  0  1  Y  N  N  -31.613  23.712  25.386   4.243   2.629   0.159  C2    4D7   2  
4D7  C3    C3    C  0  1  Y  N  N  -32.665  23.883  24.493   3.011   2.199  -0.247  C3    4D7   3  
4D7  C4    C4    C  0  1  Y  N  N  -32.826  24.952  27.057   4.945   0.368   0.561  C4    4D7   4  
4D7  N5    N5    N  0  1  Y  N  N  -35.051  25.734  26.259   3.120  -1.335   0.040  N5    4D7   5  
4D7  C6    C6    C  0  1  Y  N  N  -33.876  25.121  26.163   3.697  -0.086   0.157  C6    4D7   6  
4D7  C7    C7    C  0  1  Y  N  N  -33.796  24.589  24.886   2.718   0.833  -0.257  C7    4D7   7  
4D7  N8    N8    N  0  1  Y  N  N  -34.926  24.901  24.259   1.618   0.114  -0.596  N8    4D7   8  
4D7  C9    C9    C  0  1  Y  N  N  -35.691  25.599  25.097   1.855  -1.154  -0.426  C9    4D7   9  
4D7  C10   C10   C  0  1  N  N  N  -37.080  26.157  24.778   0.869  -2.261  -0.699  C10   4D7  10  
4D7  C11   C11   C  0  1  N  N  R  -36.979  27.519  24.088  -0.419  -2.001   0.084  C11   4D7  11  
4D7  C12   C12   C  0  1  N  N  N  -38.356  28.185  24.069  -1.358  -3.167  -0.091  C12   4D7  12  
4D7  O13   O13   O  0  1  N  N  N  -38.762  28.803  25.051  -0.983  -4.395   0.300  O13   4D7  13  
4D7  O14   O14   O  0  1  N  N  N  -39.070  28.109  23.070  -2.448  -2.996  -0.584  O14   4D7  14  
4D7  N15   N15   N  0  1  N  N  N  -36.502  27.336  22.710  -1.057  -0.781  -0.417  N15   4D7  15  
4D7  C16   C16   C  0  1  N  N  N  -35.257  27.633  22.349  -1.880  -0.073   0.382  C16   4D7  16  
4D7  C17   C17   C  0  1  Y  N  N  -34.933  27.381  20.875  -2.521   1.154  -0.122  C17   4D7  17  
4D7  O18   O18   O  0  1  N  N  N  -34.406  28.078  23.118  -2.092  -0.447   1.520  O18   4D7  18  
4D7  C19   C19   C  0  1  Y  N  N  -35.256  28.218  19.825  -3.373   1.978   0.555  C19   4D7  19  
4D7  O20   O20   O  0  1  Y  N  N  -34.799  27.645  18.681  -3.728   2.977  -0.258  O20   4D7  20  
4D7  C21   C21   C  0  1  Y  N  N  -34.201  26.461  19.065  -3.142   2.850  -1.458  C21   4D7  21  
4D7  C22   C22   C  0  1  Y  N  N  -34.292  26.320  20.393  -2.373   1.750  -1.458  C22   4D7  22  
4D7  C23   C23   C  0  1  N  N  N  -35.998  29.552  19.932  -3.835   1.791   1.977  C23   4D7  23  
4D7  H1    H1    H  0  1  N  N  N  -30.876  24.114  27.360   6.182   2.076   0.876  H1    4D7  24  
4D7  H2    H2    H  0  1  N  N  N  -30.733  23.164  25.085   4.466   3.685   0.165  H2    4D7  25  
4D7  H3    H3    H  0  1  N  N  N  -32.604  23.469  23.498   2.265   2.915  -0.559  H3    4D7  26  
4D7  H4    H4    H  0  1  N  N  N  -32.889  25.367  28.052   5.704  -0.335   0.872  H4    4D7  27  
4D7  H10   H10   H  0  1  N  N  N  -37.602  25.456  24.110   0.646  -2.294  -1.765  H10   4D7  28  
4D7  H10A  H10A  H  0  0  N  N  N  -37.643  26.272  25.716   1.297  -3.214  -0.388  H10A  4D7  29  
4D7  H11   H11   H  0  1  N  N  N  -36.272  28.157  24.638  -0.184  -1.879   1.141  H11   4D7  30  
4D7  HO13  HO13  H  0  0  N  N  N  -39.628  29.151  24.871  -1.619  -5.111   0.168  HO13  4D7  31  
4D7  HN15  HN15  H  0  0  N  N  N  -37.133  26.977  22.022  -0.888  -0.482  -1.325  HN15  4D7  32  
4D7  H21   H21   H  0  1  N  N  N  -33.731  25.756  18.395  -3.266   3.527  -2.291  H21   4D7  33  
4D7  H22   H22   H  0  1  N  N  N  -33.912  25.491  20.971  -1.773   1.376  -2.274  H22   4D7  34  
4D7  H23   H23   H  0  1  N  N  N  -36.111  29.991  18.930  -3.147   2.299   2.652  H23   4D7  35  
4D7  H23A  H23A  H  0  0  N  N  N  -36.992  29.384  20.373  -4.834   2.211   2.092  H23A  4D7  36  
4D7  H23B  H23B  H  0  0  N  N  N  -35.425  30.240  20.570  -3.858   0.728   2.215  H23B  4D7  37  
4D7  HN5   HN5   H  0  1  N  N  N  -35.396  26.215  27.065   3.542  -2.185   0.243  HN5   4D7  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4D7  C2   C1    DOUB  Y  N   1  
4D7  C1   C4    SING  Y  N   2  
4D7  C1   H1    SING  N  N   3  
4D7  C3   C2    SING  Y  N   4  
4D7  C2   H2    SING  N  N   5  
4D7  C3   C7    DOUB  Y  N   6  
4D7  C3   H3    SING  N  N   7  
4D7  C6   C4    DOUB  Y  N   8  
4D7  C4   H4    SING  N  N   9  
4D7  C9   N5    SING  Y  N  10  
4D7  C6   N5    SING  Y  N  11  
4D7  C7   C6    SING  Y  N  12  
4D7  N8   C7    SING  Y  N  13  
4D7  N8   C9    DOUB  Y  N  14  
4D7  C10  C9    SING  N  N  15  
4D7  C11  C10   SING  N  N  16  
4D7  C10  H10   SING  N  N  17  
4D7  C10  H10A  SING  N  N  18  
4D7  N15  C11   SING  N  N  19  
4D7  C12  C11   SING  N  N  20  
4D7  C11  H11   SING  N  N  21  
4D7  O14  C12   DOUB  N  N  22  
4D7  C12  O13   SING  N  N  23  
4D7  O13  HO13  SING  N  N  24  
4D7  C16  N15   SING  N  N  25  
4D7  N15  HN15  SING  N  N  26  
4D7  C17  C16   SING  N  N  27  
4D7  C16  O18   DOUB  N  N  28  
4D7  C19  C17   DOUB  Y  N  29  
4D7  C22  C17   SING  Y  N  30  
4D7  O20  C19   SING  Y  N  31  
4D7  C19  C23   SING  N  N  32  
4D7  O20  C21   SING  Y  N  33  
4D7  C21  C22   DOUB  Y  N  34  
4D7  C21  H21   SING  N  N  35  
4D7  C22  H22   SING  N  N  36  
4D7  C23  H23   SING  N  N  37  
4D7  C23  H23A  SING  N  N  38  
4D7  C23  H23B  SING  N  N  39  
4D7  N5   HN5   SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4D7  SMILES            ACDLabs               11.02  "O=C(NC(C(=O)O)Cc2nc1ccccc1n2)c3c(occ3)C"  
4D7  SMILES_CANONICAL  CACTVS                3.352  "Cc1occc1C(=O)N[C@H](Cc2[nH]c3ccccc3n2)C(O)=O"  
4D7  SMILES            CACTVS                3.352  "Cc1occc1C(=O)N[CH](Cc2[nH]c3ccccc3n2)C(O)=O"  
4D7  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "Cc1c(cco1)C(=O)N[C@H](Cc2[nH]c3ccccc3n2)C(=O)O"  
4D7  SMILES            "OpenEye OEToolkits"  1.7.0  "Cc1c(cco1)C(=O)NC(Cc2[nH]c3ccccc3n2)C(=O)O"  
4D7  InChI             InChI                 1.03   "InChI=1S/C16H15N3O4/c1-9-10(6-7-23-9)15(20)19-13(16(21)22)8-14-17-11-4-2-3-5-12(11)18-14/h2-7,13H,8H2,1H3,(H,17,18)(H,19,20)(H,21,22)/t13-/m1/s1"  
4D7  InChIKey          InChI                 1.03   IBXZTXVMQARJHH-CYBMUJFWSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
4D7  "SYSTEMATIC NAME"  ACDLabs               11.02  "3-(1H-benzimidazol-2-yl)-N-[(2-methylfuran-3-yl)carbonyl]-D-alanine"  
4D7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(2R)-3-(1H-benzimidazol-2-yl)-2-[(2-methylfuran-3-yl)carbonylamino]propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4D7  "Create component"      2009-10-22  PDBJ  
4D7  "Modify aromatic_flag"  2011-06-04  RCSB  
4D7  "Modify descriptor"     2011-06-04  RCSB  
4D7  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     4D7
_pdbx_chem_comp_synonyms.name        "(R)-3-(1H-Benzoimidazol-2-yl)-2-[(2-methyl-furan-3-carbonyl)-amino]-propionic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
