data_2I7
# 
_chem_comp.id                                    2I7 
_chem_comp.name                                  "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-[(3-{[3-methyl-5-(pyrimidin-2-yl)anilino]methyl}phenyl)methyl]piperidine-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H30 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-06-28 
_chem_comp.pdbx_modified_date                    2022-07-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        450.530 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2I7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7R6J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2I7 N1  N1  N 0 1 N N N -35.729 -30.109 -68.977 4.082  -0.553 -0.333 N1  2I7 1  
2I7 N3  N2  N 0 1 Y N N -43.375 -28.990 -66.708 -7.297 0.553  -0.813 N3  2I7 2  
2I7 C4  C1  C 0 1 N N N -36.085 -31.553 -69.105 3.124  0.552  -0.468 C4  2I7 3  
2I7 C5  C2  C 0 1 N N R -34.438 -30.035 -68.247 5.283  -0.316 -1.145 C5  2I7 4  
2I7 C6  C3  C 0 1 N N N -33.967 -28.546 -68.205 6.232  -1.508 -1.010 C6  2I7 5  
2I7 C7  C4  C 0 1 N N N -36.761 -29.404 -68.576 3.457  -1.836 -0.680 C7  2I7 6  
2I7 C8  C5  C 0 1 Y N N -37.296 -29.882 -67.118 2.329  -2.120 0.278  C8  2I7 7  
2I7 C10 C6  C 0 1 Y N N -38.633 -31.380 -65.676 0.015  -1.944 0.867  C10 2I7 8  
2I7 C13 C7  C 0 1 Y N N -41.526 -31.293 -62.523 -2.982 1.802  1.464  C13 2I7 9  
2I7 C15 C8  C 0 1 N N N -42.673 -29.960 -60.622 -4.386 3.830  1.878  C15 2I7 10 
2I7 C17 C9  C 0 1 Y N N -42.510 -29.513 -64.444 -5.042 0.568  0.076  C17 2I7 11 
2I7 C20 C10 C 0 1 Y N N -44.164 -26.871 -67.375 -8.139 -1.271 -2.006 C20 2I7 12 
2I7 C21 C11 C 0 1 Y N N -43.841 -26.418 -66.092 -6.922 -1.913 -1.834 C21 2I7 13 
2I7 C22 C12 C 0 1 Y N N -41.714 -30.592 -64.855 -3.828 -0.093 0.249  C22 2I7 14 
2I7 C24 C13 C 0 1 Y N N -37.219 -29.764 -64.652 1.539  -3.074 2.327  C24 2I7 15 
2I7 C1  C14 C 0 1 N N R -33.347 -30.845 -69.055 5.986  0.954  -0.659 C1  2I7 16 
2I7 C11 C15 C 0 1 N N N -39.661 -32.566 -65.611 -1.380 -1.467 0.551  C11 2I7 17 
2I7 C12 C16 C 0 1 Y N N -41.216 -31.493 -63.877 -2.797 0.529  0.939  C12 2I7 18 
2I7 C14 C17 C 0 1 Y N N -42.319 -30.205 -62.126 -4.191 2.452  1.301  C14 2I7 19 
2I7 C16 C18 C 0 1 Y N N -42.813 -29.322 -63.098 -5.219 1.843  0.611  C16 2I7 20 
2I7 C18 C19 C 0 1 Y N N -43.094 -28.534 -65.497 -6.146 -0.088 -0.666 C18 2I7 21 
2I7 C19 C20 C 0 1 Y N N -43.921 -28.220 -67.671 -8.302 -0.003 -1.469 C19 2I7 22 
2I7 C2  C21 C 0 1 N N R -33.719 -32.251 -69.278 5.025  2.140  -0.777 C2  2I7 23 
2I7 C23 C22 C 0 1 Y N N -38.111 -30.804 -64.532 0.258  -2.642 2.034  C23 2I7 24 
2I7 C25 C23 C 0 1 Y N N -36.768 -29.321 -65.954 2.574  -2.813 1.449  C25 2I7 25 
2I7 C3  C24 C 0 1 N N S -35.003 -32.312 -69.975 3.762  1.848  0.038  C3  2I7 26 
2I7 C9  C25 C 0 1 Y N N -38.209 -30.914 -66.965 1.050  -1.684 -0.012 C9  2I7 27 
2I7 N2  N3  N 0 1 N N N -40.350 -32.627 -64.310 -1.574 -0.125 1.105  N2  2I7 28 
2I7 N4  N4  N 0 1 Y N N -43.327 -27.257 -65.170 -5.958 -1.301 -1.167 N4  2I7 29 
2I7 O1  O1  O 0 1 N N N -32.017 -30.767 -68.486 7.143  1.195  -1.462 O1  2I7 30 
2I7 O2  O2  O 0 1 N N N -32.780 -32.890 -70.222 5.658  3.319  -0.273 O2  2I7 31 
2I7 O3  O3  O 0 1 N N N -35.343 -33.679 -70.249 2.837  2.926  -0.113 O3  2I7 32 
2I7 O4  O4  O 0 1 N N N -34.172 -28.015 -69.457 6.669  -1.617 0.346  O4  2I7 33 
2I7 H2  H2  H 0 1 N N N -37.068 -31.642 -69.590 2.848  0.668  -1.516 H2  2I7 34 
2I7 H3  H3  H 0 1 N N N -36.128 -32.006 -68.104 2.232  0.333  0.119  H3  2I7 35 
2I7 H4  H4  H 0 1 N N N -34.529 -30.437 -67.227 4.997  -0.195 -2.190 H4  2I7 36 
2I7 H5  H5  H 0 1 N N N -32.899 -28.496 -67.946 5.712  -2.421 -1.298 H5  2I7 37 
2I7 H6  H6  H 0 1 N N N -34.552 -27.987 -67.459 7.095  -1.360 -1.659 H6  2I7 38 
2I7 H7  H7  H 0 1 N N N -36.467 -28.346 -68.517 3.067  -1.788 -1.697 H7  2I7 39 
2I7 H8  H8  H 0 1 N N N -37.575 -29.518 -69.308 4.200  -2.631 -0.613 H8  2I7 40 
2I7 H9  H9  H 0 1 N N N -41.151 -31.982 -61.780 -2.180 2.283  2.005  H9  2I7 41 
2I7 H10 H10 H 0 1 N N N -43.606 -30.488 -60.374 -4.091 4.578  1.141  H10 2I7 42 
2I7 H11 H11 H 0 1 N N N -41.858 -30.338 -59.987 -5.435 3.970  2.138  H11 2I7 43 
2I7 H12 H12 H 0 1 N N N -42.804 -28.882 -60.447 -3.772 3.940  2.772  H12 2I7 44 
2I7 H13 H13 H 0 1 N N N -44.586 -26.205 -68.113 -8.943 -1.748 -2.547 H13 2I7 45 
2I7 H14 H14 H 0 1 N N N -44.006 -25.382 -65.836 -6.763 -2.901 -2.239 H14 2I7 46 
2I7 H15 H15 H 0 1 N N N -41.483 -30.736 -65.900 -3.686 -1.081 -0.163 H15 2I7 47 
2I7 H16 H16 H 0 1 N N N -36.851 -29.272 -63.764 1.730  -3.619 3.240  H16 2I7 48 
2I7 H17 H17 H 0 1 N N N -33.301 -30.369 -70.046 6.285  0.829  0.382  H17 2I7 49 
2I7 H18 H18 H 0 1 N N N -40.411 -32.430 -66.404 -1.518 -1.438 -0.530 H18 2I7 50 
2I7 H19 H19 H 0 1 N N N -39.123 -33.512 -65.773 -2.106 -2.151 0.991  H19 2I7 51 
2I7 H20 H20 H 0 1 N N N -43.432 -28.489 -62.801 -6.159 2.358  0.478  H20 2I7 52 
2I7 H21 H21 H 0 1 N N N -44.164 -28.630 -68.640 -9.237 0.525  -1.585 H21 2I7 53 
2I7 H22 H22 H 0 1 N N N -33.757 -32.804 -68.328 4.757  2.290  -1.823 H22 2I7 54 
2I7 H23 H23 H 0 1 N N N -38.400 -31.166 -63.557 -0.550 -2.846 2.720  H23 2I7 55 
2I7 H24 H24 H 0 1 N N N -36.016 -28.549 -66.026 3.574  -3.151 1.677  H24 2I7 56 
2I7 H25 H25 H 0 1 N N N -34.912 -31.768 -70.927 4.025  1.737  1.089  H25 2I7 57 
2I7 H26 H26 H 0 1 N N N -38.616 -31.384 -67.848 0.859  -1.138 -0.924 H26 2I7 58 
2I7 H27 H27 H 0 1 N N N -40.928 -33.443 -64.326 -0.854 0.309  1.587  H27 2I7 59 
2I7 H28 H28 H 0 1 N N N -31.785 -29.857 -68.345 7.639  1.986  -1.210 H28 2I7 60 
2I7 H29 H29 H 0 1 N N N -31.907 -32.895 -69.847 5.105  4.111  -0.317 H29 2I7 61 
2I7 H30 H30 H 0 1 N N N -36.178 -33.714 -70.702 2.012  2.808  0.377  H30 2I7 62 
2I7 H31 H31 H 0 1 N N N -33.895 -27.106 -69.465 7.276  -2.353 0.506  H31 2I7 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2I7 O3  C3  SING N N 1  
2I7 O2  C2  SING N N 2  
2I7 C3  C2  SING N N 3  
2I7 C3  C4  SING N N 4  
2I7 O4  C6  SING N N 5  
2I7 C2  C1  SING N N 6  
2I7 C4  N1  SING N N 7  
2I7 C1  O1  SING N N 8  
2I7 C1  C5  SING N N 9  
2I7 N1  C7  SING N N 10 
2I7 N1  C5  SING N N 11 
2I7 C7  C8  SING N N 12 
2I7 C5  C6  SING N N 13 
2I7 C19 C20 DOUB Y N 14 
2I7 C19 N3  SING Y N 15 
2I7 C20 C21 SING Y N 16 
2I7 C8  C9  DOUB Y N 17 
2I7 C8  C25 SING Y N 18 
2I7 C9  C10 SING Y N 19 
2I7 N3  C18 DOUB Y N 20 
2I7 C21 N4  DOUB Y N 21 
2I7 C25 C24 DOUB Y N 22 
2I7 C10 C11 SING N N 23 
2I7 C10 C23 DOUB Y N 24 
2I7 C11 N2  SING N N 25 
2I7 C18 N4  SING Y N 26 
2I7 C18 C17 SING N N 27 
2I7 C22 C17 DOUB Y N 28 
2I7 C22 C12 SING Y N 29 
2I7 C24 C23 SING Y N 30 
2I7 C17 C16 SING Y N 31 
2I7 N2  C12 SING N N 32 
2I7 C12 C13 DOUB Y N 33 
2I7 C16 C14 DOUB Y N 34 
2I7 C13 C14 SING Y N 35 
2I7 C14 C15 SING N N 36 
2I7 C4  H2  SING N N 37 
2I7 C4  H3  SING N N 38 
2I7 C5  H4  SING N N 39 
2I7 C6  H5  SING N N 40 
2I7 C6  H6  SING N N 41 
2I7 C7  H7  SING N N 42 
2I7 C7  H8  SING N N 43 
2I7 C13 H9  SING N N 44 
2I7 C15 H10 SING N N 45 
2I7 C15 H11 SING N N 46 
2I7 C15 H12 SING N N 47 
2I7 C20 H13 SING N N 48 
2I7 C21 H14 SING N N 49 
2I7 C22 H15 SING N N 50 
2I7 C24 H16 SING N N 51 
2I7 C1  H17 SING N N 52 
2I7 C11 H18 SING N N 53 
2I7 C11 H19 SING N N 54 
2I7 C16 H20 SING N N 55 
2I7 C19 H21 SING N N 56 
2I7 C2  H22 SING N N 57 
2I7 C23 H23 SING N N 58 
2I7 C25 H24 SING N N 59 
2I7 C3  H25 SING N N 60 
2I7 C9  H26 SING N N 61 
2I7 N2  H27 SING N N 62 
2I7 O1  H28 SING N N 63 
2I7 O2  H29 SING N N 64 
2I7 O3  H30 SING N N 65 
2I7 O4  H31 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2I7 SMILES           ACDLabs              12.01 "Cc1cc(cc(c1)NCc1cc(CN2CC(O)C(O)C(O)C2CO)ccc1)c1ncccn1"                                                                                                                               
2I7 InChI            InChI                1.03  "InChI=1S/C25H30N4O4/c1-16-8-19(25-26-6-3-7-27-25)11-20(9-16)28-12-17-4-2-5-18(10-17)13-29-14-22(31)24(33)23(32)21(29)15-30/h2-11,21-24,28,30-33H,12-15H2,1H3/t21-,22+,23-,24-/m1/s1" 
2I7 InChIKey         InChI                1.03  MCCXVNXVINRCAD-UEQSERJNSA-N                                                                                                                                                           
2I7 SMILES_CANONICAL CACTVS               3.385 "Cc1cc(NCc2cccc(CN3C[C@H](O)[C@@H](O)[C@H](O)[C@H]3CO)c2)cc(c1)c4ncccn4"                                                                                                              
2I7 SMILES           CACTVS               3.385 "Cc1cc(NCc2cccc(CN3C[CH](O)[CH](O)[CH](O)[CH]3CO)c2)cc(c1)c4ncccn4"                                                                                                                   
2I7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1)NCc2cccc(c2)CN3C[C@@H]([C@H]([C@@H]([C@H]3CO)O)O)O)c4ncccn4"                                                                                                             
2I7 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1)NCc2cccc(c2)CN3CC(C(C(C3CO)O)O)O)c4ncccn4"                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2I7 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-[(3-{[3-methyl-5-(pyrimidin-2-yl)anilino]methyl}phenyl)methyl]piperidine-3,4,5-triol"                  
2I7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[[3-[[(3-methyl-5-pyrimidin-2-yl-phenyl)amino]methyl]phenyl]methyl]piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2I7 "Create component" 2021-06-28 RCSB 
2I7 "Initial release"  2022-07-06 RCSB 
# 
