data_VL6
# 
_chem_comp.id                                    VL6 
_chem_comp.name                                  "(2S,4R)-1-[(2R)-2-[3-[2-(2-methoxyethoxy)ethoxy]-1,2-oxazol-5-yl]-3-methyl-butanoyl]-N-[(1S)-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl]-4-oxidanyl-pyrrolidine-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H40 N4 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-13 
_chem_comp.pdbx_modified_date                    2024-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        600.726 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VL6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QJS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VL6 C4  C1  C 0 1 N N N N N N 58.144 -80.759 -5.068 -7.863  0.092  1.068  C4  VL6 1  
VL6 C14 C2  C 0 1 N N R N N N 55.877 -74.490 1.465  -0.919  -1.304 -1.256 C14 VL6 2  
VL6 C5  C3  C 0 1 Y N N N N N 56.668 -79.335 -3.772 -5.869  1.023  0.172  C5  VL6 3  
VL6 C6  C4  C 0 1 Y N N N N N 55.566 -77.763 -2.726 -3.960  2.057  -0.066 C6  VL6 4  
VL6 C11 C5  C 0 1 N N N N N N 53.153 -76.785 -4.022 -3.966  4.788  -0.934 C11 VL6 5  
VL6 C7  C6  C 0 1 Y N N N N N 55.529 -79.075 -2.987 -4.884  1.379  -0.785 C7  VL6 6  
VL6 C8  C7  C 0 1 N N R N N N 54.687 -76.868 -1.935 -2.686  2.671  -0.586 C8  VL6 7  
VL6 C9  C8  C 0 1 N N N N N N 53.270 -77.063 -2.533 -2.702  4.178  -0.325 C9  VL6 8  
VL6 C10 C9  C 0 1 N N N N N N 52.237 -76.258 -1.757 -1.468  4.819  -0.963 C10 VL6 9  
VL6 C12 C10 C 0 1 N N N N N N 54.684 -77.265 -0.467 -1.506  2.052  0.118  C12 VL6 10 
VL6 C13 C11 C 0 1 N N N N N N 55.018 -74.885 0.279  -1.466  0.125  -1.493 C13 VL6 11 
VL6 N1  N1  N 0 1 N N N N N N 54.880 -76.322 0.469  -0.955  0.918  -0.360 N1  VL6 12 
VL6 N2  N2  N 0 1 N N N N N N 53.738 -78.184 3.328  2.654   0.800  0.443  N2  VL6 13 
VL6 C3  C12 C 0 1 N N N N N N 58.592 -82.189 -4.976 -9.094  -0.697 0.619  C3  VL6 14 
VL6 N3  N3  N 0 1 Y N N N N N 50.523 -74.669 10.641 10.358  -2.518 -0.830 N3  VL6 15 
VL6 O6  O1  O 0 1 N N N N N N 52.588 -76.754 2.014  1.288   2.296  -0.462 O6  VL6 16 
VL6 C17 C13 C 0 1 N N N N N N 53.654 -77.208 2.422  1.435   1.195  0.025  C17 VL6 17 
VL6 C18 C14 C 0 1 N N S N N N 52.567 -78.754 3.995  3.802   1.702  0.309  C18 VL6 18 
VL6 C20 C15 C 0 1 Y N N N N N 52.237 -77.924 5.220  5.071   0.893  0.248  C20 VL6 19 
VL6 C25 C16 C 0 1 Y N N N N N 53.253 -77.414 6.017  5.221   -0.218 1.059  C25 VL6 20 
VL6 C24 C17 C 0 1 Y N N N N N 52.970 -76.628 7.119  6.381   -0.962 1.008  C24 VL6 21 
VL6 C23 C18 C 0 1 Y N N N N N 51.654 -76.318 7.451  7.405   -0.593 0.135  C23 VL6 22 
VL6 C26 C19 C 0 1 Y N N N N N 51.349 -75.470 8.623  8.652   -1.387 0.074  C26 VL6 23 
VL6 S   S1  S 0 1 Y N N N N N 52.022 -73.865 8.716  9.610   -1.921 1.453  S   VL6 24 
VL6 C29 C20 C 0 1 Y N N N N N 51.219 -73.657 10.222 10.720  -2.682 0.399  C29 VL6 25 
VL6 C27 C21 C 0 1 Y N N N N N 50.573 -75.709 9.731  9.258   -1.831 -1.047 C27 VL6 26 
VL6 C28 C22 C 0 1 N N N N N N 49.824 -76.962 10.049 8.721   -1.564 -2.429 C28 VL6 27 
VL6 C22 C23 C 0 1 Y N N N N N 50.634 -76.802 6.635  7.248   0.528  -0.681 C22 VL6 28 
VL6 C21 C24 C 0 1 Y N N N N N 50.927 -77.583 5.529  6.081   1.261  -0.624 C21 VL6 29 
VL6 C19 C25 C 0 1 N N N N N N 52.860 -80.207 4.353  3.854   2.643  1.515  C19 VL6 30 
VL6 C16 C26 C 0 1 N N S N N N 54.985 -76.700 1.880  0.255   0.267  0.162  C16 VL6 31 
VL6 C15 C27 C 0 1 N N N N N N 55.361 -75.386 2.580  0.489   -1.007 -0.676 C15 VL6 32 
VL6 O5  O2  O 0 1 N N N N N N 57.241 -74.806 1.210  -1.724  -2.011 -0.310 O5  VL6 33 
VL6 O4  O3  O 0 1 N N N N N N 54.500 -78.432 -0.167 -1.052  2.573  1.114  O4  VL6 34 
VL6 O3  O4  O 0 1 Y N N N N N 56.670 -77.219 -3.281 -4.400  2.076  1.201  O3  VL6 35 
VL6 N   N4  N 0 1 Y N N N N N 57.376 -78.247 -3.970 -5.457  1.500  1.316  N   VL6 36 
VL6 O2  O5  O 0 1 N N N N N N 56.958 -80.570 -4.244 -7.014  0.330  -0.056 O2  VL6 37 
VL6 O1  O6  O 0 1 N N N N N N 59.439 -82.387 -3.845 -8.692  -1.992 0.168  O1  VL6 38 
VL6 C2  C28 C 0 1 N N N N N N 58.900 -83.310 -2.894 -9.773  -2.815 -0.276 C2  VL6 39 
VL6 C1  C29 C 0 1 N N N N N N 59.985 -83.911 -2.045 -9.228  -4.170 -0.733 C1  VL6 40 
VL6 O   O7  O 0 1 N N N N N N 60.952 -84.634 -2.802 -8.664  -4.858 0.386  O   VL6 41 
VL6 C   C30 C 0 1 N N N N N N 61.956 -85.244 -2.006 -8.124  -6.142 0.067  C   VL6 42 
VL6 H13 H1  H 0 1 N N N N N N 58.948 -80.099 -4.711 -8.178  1.045  1.494  H13 VL6 43 
VL6 H14 H2  H 0 1 N N N N N N 57.907 -80.515 -6.114 -7.319  -0.480 1.820  H14 VL6 44 
VL6 H1  H3  H 0 1 N N N N N N 55.734 -73.429 1.717  -0.848  -1.856 -2.193 H1  VL6 45 
VL6 H22 H4  H 0 1 N N N N N N 52.115 -76.951 -4.346 -4.845  4.331  -0.480 H22 VL6 46 
VL6 H20 H5  H 0 1 N N N N N N 53.437 -75.742 -4.224 -3.978  5.862  -0.748 H20 VL6 47 
VL6 H21 H6  H 0 1 N N N N N N 53.822 -77.461 -4.575 -3.976  4.605  -2.009 H21 VL6 48 
VL6 H15 H7  H 0 1 N N N N N N 54.782 -79.785 -2.663 -4.874  1.160  -1.843 H15 VL6 49 
VL6 H   H8  H 0 1 N N N N N N 54.998 -75.819 -2.045 -2.606  2.488  -1.658 H   VL6 50 
VL6 H16 H9  H 0 1 N N N N N N 53.016 -78.124 -2.389 -2.692  4.361  0.749  H16 VL6 51 
VL6 H17 H10 H 0 1 N N N N N N 51.242 -76.413 -2.200 -1.435  5.878  -0.707 H17 VL6 52 
VL6 H19 H11 H 0 1 N N N N N N 52.227 -76.589 -0.708 -0.570  4.327  -0.591 H19 VL6 53 
VL6 H18 H12 H 0 1 N N N N N N 52.496 -75.190 -1.802 -1.520  4.709  -2.046 H18 VL6 54 
VL6 H23 H13 H 0 1 N N N N N N 55.520 -74.654 -0.672 -1.090  0.524  -2.435 H23 VL6 55 
VL6 H24 H14 H 0 1 N N N N N N 54.040 -74.382 0.309  -2.556  0.119  -1.493 H24 VL6 56 
VL6 H28 H15 H 0 1 N N N N N N 54.642 -78.542 3.562  2.772   -0.080 0.832  H28 VL6 57 
VL6 H11 H16 H 0 1 N N N N N N 59.145 -82.452 -5.890 -9.784  -0.802 1.456  H11 VL6 58 
VL6 H12 H17 H 0 1 N N N N N N 57.709 -82.838 -4.882 -9.589  -0.167 -0.195 H12 VL6 59 
VL6 H3  H18 H 0 1 N N N N N N 51.707 -78.728 3.309  3.699   2.287  -0.604 H3  VL6 60 
VL6 H35 H19 H 0 1 N N N N N N 54.281 -77.635 5.772  4.427   -0.502 1.734  H35 VL6 61 
VL6 H34 H20 H 0 1 N N N N N N 53.778 -76.251 7.728  6.497   -1.829 1.642  H34 VL6 62 
VL6 H39 H21 H 0 1 N N N N N N 51.290 -72.739 10.786 11.599  -3.223 0.715  H39 VL6 63 
VL6 H37 H22 H 0 1 N N N N N N 49.319 -76.851 11.020 9.197   -0.672 -2.838 H37 VL6 64 
VL6 H36 H23 H 0 1 N N N N N N 49.075 -77.150 9.265  8.933   -2.417 -3.074 H36 VL6 65 
VL6 H38 H24 H 0 1 N N N N N N 50.527 -77.807 10.096 7.643   -1.408 -2.376 H38 VL6 66 
VL6 H33 H25 H 0 1 N N N N N N 49.606 -76.566 6.867  8.037   0.819  -1.359 H33 VL6 67 
VL6 H32 H26 H 0 1 N N N N N N 50.124 -77.932 4.897  5.956   2.126  -1.258 H32 VL6 68 
VL6 H30 H27 H 0 1 N N N N N N 51.985 -80.645 4.855  3.957   2.057  2.428  H30 VL6 69 
VL6 H31 H28 H 0 1 N N N N N N 53.078 -80.774 3.436  4.707   3.313  1.416  H31 VL6 70 
VL6 H29 H29 H 0 1 N N N N N N 53.729 -80.251 5.026  2.935   3.228  1.559  H29 VL6 71 
VL6 H2  H30 H 0 1 N N N N N N 55.773 -77.452 2.034  0.112   0.003  1.210  H2  VL6 72 
VL6 H26 H31 H 0 1 N N N N N N 56.144 -75.558 3.333  0.827   -1.828 -0.044 H26 VL6 73 
VL6 H27 H32 H 0 1 N N N N N N 54.480 -74.937 3.062  1.203   -0.816 -1.477 H27 VL6 74 
VL6 H25 H33 H 0 1 N N N N N N 57.770 -74.555 1.958  -2.613  -2.219 -0.627 H25 VL6 75 
VL6 H9  H34 H 0 1 N N N N N N 58.378 -84.115 -3.432 -10.476 -2.964 0.543  H9  VL6 76 
VL6 H10 H35 H 0 1 N N N N N N 58.188 -82.781 -2.244 -10.281 -2.329 -1.109 H10 VL6 77 
VL6 H7  H36 H 0 1 N N N N N N 59.523 -84.598 -1.321 -10.038 -4.764 -1.154 H7  VL6 78 
VL6 H8  H37 H 0 1 N N N N N N 60.497 -83.100 -1.506 -8.459  -4.016 -1.490 H8  VL6 79 
VL6 H6  H38 H 0 1 N N N N N N 62.663 -85.781 -2.655 -8.911  -6.777 -0.338 H6  VL6 80 
VL6 H5  H39 H 0 1 N N N N N N 62.494 -84.470 -1.439 -7.332  -6.029 -0.674 H5  VL6 81 
VL6 H4  H40 H 0 1 N N N N N N 61.489 -85.953 -1.307 -7.715  -6.599 0.968  H4  VL6 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VL6 C   O   SING N N 1  
VL6 O   C1  SING N N 2  
VL6 C1  C2  SING N N 3  
VL6 C2  O1  SING N N 4  
VL6 O1  C3  SING N N 5  
VL6 C3  C4  SING N N 6  
VL6 C4  O2  SING N N 7  
VL6 O2  C5  SING N N 8  
VL6 C5  N   DOUB Y N 9  
VL6 N   O3  SING Y N 10 
VL6 O3  C6  SING Y N 11 
VL6 C7  C6  DOUB Y N 12 
VL6 C5  C7  SING Y N 13 
VL6 C6  C8  SING N N 14 
VL6 C9  C8  SING N N 15 
VL6 C10 C9  SING N N 16 
VL6 C11 C9  SING N N 17 
VL6 C8  C12 SING N N 18 
VL6 O4  C12 DOUB N N 19 
VL6 C12 N1  SING N N 20 
VL6 N1  C13 SING N N 21 
VL6 C13 C14 SING N N 22 
VL6 O5  C14 SING N N 23 
VL6 C14 C15 SING N N 24 
VL6 C15 C16 SING N N 25 
VL6 N1  C16 SING N N 26 
VL6 C16 C17 SING N N 27 
VL6 C17 O6  DOUB N N 28 
VL6 N2  C17 SING N N 29 
VL6 C18 N2  SING N N 30 
VL6 C19 C18 SING N N 31 
VL6 C20 C18 SING N N 32 
VL6 C20 C21 DOUB Y N 33 
VL6 C21 C22 SING Y N 34 
VL6 C22 C23 DOUB Y N 35 
VL6 C23 C24 SING Y N 36 
VL6 C24 C25 DOUB Y N 37 
VL6 C25 C20 SING Y N 38 
VL6 C26 C23 SING N N 39 
VL6 C26 C27 DOUB Y N 40 
VL6 C28 C27 SING N N 41 
VL6 C27 N3  SING Y N 42 
VL6 N3  C29 DOUB Y N 43 
VL6 C29 S   SING Y N 44 
VL6 S   C26 SING Y N 45 
VL6 C4  H13 SING N N 46 
VL6 C4  H14 SING N N 47 
VL6 C14 H1  SING N N 48 
VL6 C11 H22 SING N N 49 
VL6 C11 H20 SING N N 50 
VL6 C11 H21 SING N N 51 
VL6 C7  H15 SING N N 52 
VL6 C8  H   SING N N 53 
VL6 C9  H16 SING N N 54 
VL6 C10 H17 SING N N 55 
VL6 C10 H19 SING N N 56 
VL6 C10 H18 SING N N 57 
VL6 C13 H23 SING N N 58 
VL6 C13 H24 SING N N 59 
VL6 N2  H28 SING N N 60 
VL6 C3  H11 SING N N 61 
VL6 C3  H12 SING N N 62 
VL6 C18 H3  SING N N 63 
VL6 C25 H35 SING N N 64 
VL6 C24 H34 SING N N 65 
VL6 C29 H39 SING N N 66 
VL6 C28 H37 SING N N 67 
VL6 C28 H36 SING N N 68 
VL6 C28 H38 SING N N 69 
VL6 C22 H33 SING N N 70 
VL6 C21 H32 SING N N 71 
VL6 C19 H30 SING N N 72 
VL6 C19 H31 SING N N 73 
VL6 C19 H29 SING N N 74 
VL6 C16 H2  SING N N 75 
VL6 C15 H26 SING N N 76 
VL6 C15 H27 SING N N 77 
VL6 O5  H25 SING N N 78 
VL6 C2  H9  SING N N 79 
VL6 C2  H10 SING N N 80 
VL6 C1  H7  SING N N 81 
VL6 C1  H8  SING N N 82 
VL6 C   H6  SING N N 83 
VL6 C   H5  SING N N 84 
VL6 C   H4  SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VL6 InChI            InChI                1.06  "InChI=1S/C30H40N4O7S/c1-18(2)27(25-15-26(33-41-25)40-13-12-39-11-10-38-5)30(37)34-16-23(35)14-24(34)29(36)32-19(3)21-6-8-22(9-7-21)28-20(4)31-17-42-28/h6-9,15,17-19,23-24,27,35H,10-14,16H2,1-5H3,(H,32,36)" 
VL6 InChIKey         InChI                1.06  NBSZVQIAZCKTLM-UHFFFAOYSA-N                                                                                                                                                                                    
VL6 SMILES_CANONICAL CACTVS               3.385 "COCCOCCOc1cc(on1)[C@@H](C(C)C)C(=O)N2C[C@H](O)C[C@H]2C(=O)N[C@@H](C)c3ccc(cc3)c4scnc4C"                                                                                                                       
VL6 SMILES           CACTVS               3.385 "COCCOCCOc1cc(on1)[CH](C(C)C)C(=O)N2C[CH](O)C[CH]2C(=O)N[CH](C)c3ccc(cc3)c4scnc4C"                                                                                                                             
VL6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(scn1)c2ccc(cc2)[C@H](C)NC(=O)[C@@H]3C[C@H](CN3C(=O)[C@@H](c4cc(no4)OCCOCCOC)C(C)C)O"                                                                                                                     
VL6 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(scn1)c2ccc(cc2)C(C)NC(=O)C3CC(CN3C(=O)C(c4cc(no4)OCCOCCOC)C(C)C)O"                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           VL6 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},4~{R})-1-[(2~{R})-2-[3-[2-(2-methoxyethoxy)ethoxy]-1,2-oxazol-5-yl]-3-methyl-butanoyl]-~{N}-[(1~{S})-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl]-4-oxidanyl-pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VL6 "Create component" 2023-09-13 PDBE 
VL6 "Initial release"  2024-01-17 RCSB 
# 
