data_VF6
# 
_chem_comp.id                                    VF6 
_chem_comp.name                                  "~{N}-[4-[2,6-bis(azanyl)-5-(2-cyclopropylethyl)pyrimidin-4-yl]phenyl]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H21 N5 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-06 
_chem_comp.pdbx_modified_date                    2024-03-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        311.382 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VF6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CQA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VF6 C10 C1  C 0 1 N N N N N N 7.036  9.098  24.120 0.982  4.479  -1.179 C10 VF6 1  
VF6 C13 C2  C 0 1 Y N N N N N 10.088 5.837  27.971 -0.245 -0.704 0.203  C13 VF6 2  
VF6 C15 C3  C 0 1 Y N N N N N 10.807 7.104  29.870 -2.438 -0.609 -0.770 C15 VF6 3  
VF6 C21 C4  C 0 1 Y N N N N N 8.468  6.938  29.385 -2.041 0.335  1.411  C21 VF6 4  
VF6 C22 C5  C 0 1 Y N N N N N 8.768  6.135  28.298 -0.717 -0.040 1.335  C22 VF6 5  
VF6 C02 C6  C 0 1 Y N N N N N 11.591 3.187  25.967 2.770  -2.735 -0.293 C02 VF6 6  
VF6 C04 C7  C 0 1 Y N N N N N 10.434 4.394  24.438 3.514  -0.637 0.318  C04 VF6 7  
VF6 C06 C8  C 0 1 Y N N N N N 10.000 5.237  25.458 2.192  -0.204 0.408  C06 VF6 8  
VF6 C07 C9  C 0 1 N N N N N N 9.140  6.479  25.196 1.869  1.214  0.802  C07 VF6 9  
VF6 C08 C10 C 0 1 N N N N N N 7.846  6.687  25.355 1.665  2.059  -0.458 C08 VF6 10 
VF6 C09 C11 C 0 1 N N N N N N 7.409  8.123  25.029 1.337  3.499  -0.059 C09 VF6 11 
VF6 C11 C12 C 0 1 N N N N N N 7.157  9.426  25.459 2.331  4.589  -0.465 C11 VF6 12 
VF6 C12 C13 C 0 1 Y N N N N N 10.442 4.980  26.757 1.177  -1.114 0.121  C12 VF6 13 
VF6 C14 C14 C 0 1 Y N N N N N 11.109 6.317  28.768 -1.115 -0.986 -0.850 C14 VF6 14 
VF6 C16 C15 C 0 1 Y N N N N N 9.495  7.402  30.192 -2.906 0.053  0.360  C16 VF6 15 
VF6 C18 C16 C 0 1 N N N N N N 8.266  7.988  32.413 -5.203 -0.346 -0.103 C18 VF6 16 
VF6 C19 C17 C 0 1 N N N N N N 7.375  6.728  32.458 -6.657 0.012  0.071  C19 VF6 17 
VF6 N01 N1  N 0 1 N N N N N N 12.426 2.043  26.264 3.068  -4.037 -0.654 N01 VF6 18 
VF6 N03 N2  N 0 1 Y N N N N N 11.206 3.381  24.728 3.761  -1.896 -0.032 N03 VF6 19 
VF6 N05 N3  N 0 1 N N N N N N 10.060 4.527  23.038 4.557  0.234  0.590  N05 VF6 20 
VF6 N17 N4  N 0 1 N N N N N N 9.230  8.255  31.356 -4.248 0.435  0.439  N17 VF6 21 
VF6 N23 N5  N 0 1 Y N N N N N 11.234 3.968  26.955 1.502  -2.361 -0.223 N23 VF6 22 
VF6 O20 O1  O 0 1 N N N N N N 8.189  8.806  33.258 -4.894 -1.337 -0.730 O20 VF6 23 
VF6 H1  H1  H 0 1 N N N N N N 7.768  9.480  23.393 0.982  4.098  -2.200 H1  VF6 24 
VF6 H2  H2  H 0 1 N N N N N N 6.041  9.060  23.652 0.234  5.242  -0.962 H2  VF6 25 
VF6 H3  H3  H 0 1 N N N N N N 11.607 7.489  30.485 -3.112 -0.826 -1.585 H3  VF6 26 
VF6 H4  H4  H 0 1 N N N N N N 7.443  7.201  29.602 -2.407 0.849  2.288  H4  VF6 27 
VF6 H5  H5  H 0 1 N N N N N N 7.967  5.734  27.695 -0.046 0.179  2.152  H5  VF6 28 
VF6 H6  H6  H 0 1 N N N N N N 9.313  6.699  24.132 0.957  1.227  1.399  H6  VF6 29 
VF6 H7  H7  H 0 1 N N N N N N 9.610  7.259  25.813 2.692  1.626  1.386  H7  VF6 30 
VF6 H8  H8  H 0 1 N N N N N N 7.586  6.474  26.402 2.577  2.046  -1.055 H8  VF6 31 
VF6 H9  H9  H 0 1 N N N N N N 7.299  5.999  24.694 0.842  1.647  -1.042 H9  VF6 32 
VF6 H10 H10 H 0 1 N N N N N N 6.355  7.852  25.191 0.823  3.617  0.895  H10 VF6 33 
VF6 H11 H11 H 0 1 N N N N N N 7.987  10.065 25.797 3.219  4.280  -1.017 H11 VF6 34 
VF6 H12 H12 H 0 1 N N N N N N 6.259  9.645  26.056 2.471  5.424  0.221  H12 VF6 35 
VF6 H13 H13 H 0 1 N N N N N N 12.137 6.081  28.535 -0.752 -1.499 -1.728 H13 VF6 36 
VF6 H14 H14 H 0 1 N N N N N N 6.732  6.765  33.349 -7.277 -0.729 -0.433 H14 VF6 37 
VF6 H15 H15 H 0 1 N N N N N N 6.748  6.690  31.555 -6.902 0.030  1.133  H15 VF6 38 
VF6 H16 H16 H 0 1 N N N N N N 8.010  5.831  32.501 -6.843 0.995  -0.361 H16 VF6 39 
VF6 H17 H17 H 0 1 N N N N N N 12.601 1.530  25.423 2.352  -4.662 -0.853 H17 VF6 40 
VF6 H18 H18 H 0 1 N N N N N N 13.294 2.355  26.651 3.992  -4.326 -0.710 H18 VF6 41 
VF6 H19 H19 H 0 1 N N N N N N 10.476 3.787  22.510 5.475  -0.073 0.525  H19 VF6 42 
VF6 H20 H20 H 0 1 N N N N N N 9.065  4.479  22.953 4.370  1.151  0.844  H20 VF6 43 
VF6 H21 H21 H 0 1 N N N N N N 9.762  9.099  31.430 -4.491 1.261  0.884  H21 VF6 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VF6 N05 C04 SING N N 1  
VF6 C10 C09 SING N N 2  
VF6 C10 C11 SING N N 3  
VF6 C04 N03 DOUB Y N 4  
VF6 C04 C06 SING Y N 5  
VF6 N03 C02 SING Y N 6  
VF6 C09 C08 SING N N 7  
VF6 C09 C11 SING N N 8  
VF6 C07 C08 SING N N 9  
VF6 C07 C06 SING N N 10 
VF6 C06 C12 DOUB Y N 11 
VF6 C02 N01 SING N N 12 
VF6 C02 N23 DOUB Y N 13 
VF6 C12 N23 SING Y N 14 
VF6 C12 C13 SING N N 15 
VF6 C13 C22 DOUB Y N 16 
VF6 C13 C14 SING Y N 17 
VF6 C22 C21 SING Y N 18 
VF6 C14 C15 DOUB Y N 19 
VF6 C21 C16 DOUB Y N 20 
VF6 C15 C16 SING Y N 21 
VF6 C16 N17 SING N N 22 
VF6 N17 C18 SING N N 23 
VF6 C18 C19 SING N N 24 
VF6 C18 O20 DOUB N N 25 
VF6 C10 H1  SING N N 26 
VF6 C10 H2  SING N N 27 
VF6 C15 H3  SING N N 28 
VF6 C21 H4  SING N N 29 
VF6 C22 H5  SING N N 30 
VF6 C07 H6  SING N N 31 
VF6 C07 H7  SING N N 32 
VF6 C08 H8  SING N N 33 
VF6 C08 H9  SING N N 34 
VF6 C09 H10 SING N N 35 
VF6 C11 H11 SING N N 36 
VF6 C11 H12 SING N N 37 
VF6 C14 H13 SING N N 38 
VF6 C19 H14 SING N N 39 
VF6 C19 H15 SING N N 40 
VF6 C19 H16 SING N N 41 
VF6 N01 H17 SING N N 42 
VF6 N01 H18 SING N N 43 
VF6 N05 H19 SING N N 44 
VF6 N05 H20 SING N N 45 
VF6 N17 H21 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VF6 InChI            InChI                1.06  "InChI=1S/C17H21N5O/c1-10(23)20-13-7-5-12(6-8-13)15-14(9-4-11-2-3-11)16(18)22-17(19)21-15/h5-8,11H,2-4,9H2,1H3,(H,20,23)(H4,18,19,21,22)" 
VF6 InChIKey         InChI                1.06  SCRAMBGYZMQUJK-UHFFFAOYSA-N                                                                                                               
VF6 SMILES_CANONICAL CACTVS               3.385 "CC(=O)Nc1ccc(cc1)c2nc(N)nc(N)c2CCC3CC3"                                                                                                  
VF6 SMILES           CACTVS               3.385 "CC(=O)Nc1ccc(cc1)c2nc(N)nc(N)c2CCC3CC3"                                                                                                  
VF6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)Nc1ccc(cc1)c2c(c(nc(n2)N)N)CCC3CC3"                                                                                                
VF6 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)Nc1ccc(cc1)c2c(c(nc(n2)N)N)CCC3CC3"                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           VF6 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[4-[2,6-bis(azanyl)-5-(2-cyclopropylethyl)pyrimidin-4-yl]phenyl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VF6 "Create component" 2023-03-06 PDBE 
VF6 "Initial release"  2024-03-13 RCSB 
# 
