data_VD6
# 
_chem_comp.id                                    VD6 
_chem_comp.name                                  "(2R)-1-benzylpiperidine-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H17 N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-29 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        219.280 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VD6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FKW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VD6 C7  C1  C 0 1 N N N 50.815 2.134  26.983 0.367  1.618  1.038  C7  VD6 1  
VD6 C8  C2  C 0 1 N N N 50.634 1.977  28.508 0.922  2.568  -0.025 C8  VD6 2  
VD6 C9  C3  C 0 1 N N N 49.456 2.736  29.082 2.421  2.312  -0.200 C9  VD6 3  
VD6 O1  O1  O 0 1 N N N 46.736 4.194  25.553 3.459  -1.959 -0.168 O1  VD6 4  
VD6 C1  C4  C 0 1 Y N N 51.508 0.227  22.927 -3.521 -1.441 0.237  C1  VD6 5  
VD6 C5  C5  C 0 1 Y N N 53.266 1.464  23.971 -3.734 0.901  -0.208 C5  VD6 6  
VD6 C6  C6  C 0 1 N N N 49.994 3.144  24.746 -0.111 -0.073 -0.628 C6  VD6 7  
VD6 C4  C7  C 0 1 Y N N 52.359 2.375  24.469 -2.376 0.977  -0.456 C4  VD6 8  
VD6 C3  C8  C 0 1 Y N N 51.019 2.207  24.199 -1.591 -0.156 -0.358 C3  VD6 9  
VD6 C2  C9  C 0 1 Y N N 50.600 1.136  23.417 -2.164 -1.366 -0.011 C2  VD6 10 
VD6 C12 C10 C 0 1 N N N 47.448 3.249  25.726 2.229  -1.499 0.111  C12 VD6 11 
VD6 O   O2  O 0 1 N N N 47.441 2.170  25.203 1.278  -2.242 0.053  O   VD6 12 
VD6 C11 C11 C 0 1 N N R 48.572 3.454  26.872 2.034  -0.055 0.495  C11 VD6 13 
VD6 C10 C12 C 0 1 N N N 48.313 2.671  28.131 2.639  0.846  -0.585 C10 VD6 14 
VD6 N   N1  N 0 1 N N N 50.006 3.248  26.311 0.599  0.228  0.623  N   VD6 15 
VD6 C   C13 C 0 1 Y N N 52.844 0.394  23.211 -4.306 -0.308 0.139  C   VD6 16 
VD6 H1  H1  H 0 1 N N N 50.528 1.182  26.512 0.869  1.802  1.987  H1  VD6 17 
VD6 H2  H2  H 0 1 N N N 51.880 2.332  26.791 -0.704 1.788  1.154  H2  VD6 18 
VD6 H3  H3  H 0 1 N N N 50.495 0.908  28.729 0.410  2.394  -0.972 H3  VD6 19 
VD6 H4  H4  H 0 1 N N N 51.549 2.338  29.001 0.763  3.600  0.290  H4  VD6 20 
VD6 H5  H5  H 0 1 N N N 49.740 3.786  29.243 2.812  2.957  -0.987 H5  VD6 21 
VD6 H6  H6  H 0 1 N N N 49.161 2.285  30.041 2.938  2.525  0.736  H6  VD6 22 
VD6 H7  H7  H 0 1 N N N 46.091 3.987  24.887 3.534  -2.893 -0.410 H7  VD6 23 
VD6 H8  H8  H 0 1 N N N 51.177 -0.608 22.327 -3.970 -2.387 0.504  H8  VD6 24 
VD6 H9  H9  H 0 1 N N N 54.318 1.590  24.178 -4.347 1.787  -0.287 H9  VD6 25 
VD6 H10 H10 H 0 1 N N N 50.181 4.145  24.330 0.240  -1.026 -1.024 H10 VD6 26 
VD6 H11 H11 H 0 1 N N N 49.000 2.795  24.429 0.083  0.715  -1.355 H11 VD6 27 
VD6 H12 H12 H 0 1 N N N 52.695 3.211  25.064 -1.929 1.922  -0.729 H12 VD6 28 
VD6 H13 H13 H 0 1 N N N 49.550 1.017  23.192 -1.550 -2.251 0.066  H13 VD6 29 
VD6 H14 H14 H 0 1 N N N 48.509 4.516  27.150 2.528  0.138  1.447  H14 VD6 30 
VD6 H15 H15 H 0 1 N N N 47.419 3.080  28.624 2.155  0.645  -1.540 H15 VD6 31 
VD6 H16 H16 H 0 1 N N N 48.135 1.619  27.863 3.707  0.647  -0.668 H16 VD6 32 
VD6 H18 H18 H 0 1 N N N 53.566 -0.317 22.837 -5.367 -0.367 0.333  H18 VD6 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VD6 C1  C   DOUB Y N 1  
VD6 C1  C2  SING Y N 2  
VD6 C   C5  SING Y N 3  
VD6 C2  C3  DOUB Y N 4  
VD6 C5  C4  DOUB Y N 5  
VD6 C3  C4  SING Y N 6  
VD6 C3  C6  SING N N 7  
VD6 C6  N   SING N N 8  
VD6 O   C12 DOUB N N 9  
VD6 O1  C12 SING N N 10 
VD6 C12 C11 SING N N 11 
VD6 N   C11 SING N N 12 
VD6 N   C7  SING N N 13 
VD6 C11 C10 SING N N 14 
VD6 C7  C8  SING N N 15 
VD6 C10 C9  SING N N 16 
VD6 C8  C9  SING N N 17 
VD6 C7  H1  SING N N 18 
VD6 C7  H2  SING N N 19 
VD6 C8  H3  SING N N 20 
VD6 C8  H4  SING N N 21 
VD6 C9  H5  SING N N 22 
VD6 C9  H6  SING N N 23 
VD6 O1  H7  SING N N 24 
VD6 C1  H8  SING N N 25 
VD6 C5  H9  SING N N 26 
VD6 C6  H10 SING N N 27 
VD6 C6  H11 SING N N 28 
VD6 C4  H12 SING N N 29 
VD6 C2  H13 SING N N 30 
VD6 C11 H14 SING N N 31 
VD6 C10 H15 SING N N 32 
VD6 C10 H16 SING N N 33 
VD6 C   H18 SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VD6 SMILES           ACDLabs              12.01 "O=C(O)C1CCCCN1Cc1ccccc1"                                                                                       
VD6 InChI            InChI                1.06  "InChI=1S/C13H17NO2/c15-13(16)12-8-4-5-9-14(12)10-11-6-2-1-3-7-11/h1-3,6-7,12H,4-5,8-10H2,(H,15,16)/t12-/m1/s1" 
VD6 InChIKey         InChI                1.06  FEUCBQVXYVZGCM-GFCCVEGCSA-N                                                                                     
VD6 SMILES_CANONICAL CACTVS               3.385 "OC(=O)[C@H]1CCCCN1Cc2ccccc2"                                                                                   
VD6 SMILES           CACTVS               3.385 "OC(=O)[CH]1CCCCN1Cc2ccccc2"                                                                                    
VD6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCCC[C@@H]2C(=O)O"                                                                                
VD6 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCCCC2C(=O)O"                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VD6 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-1-benzylpiperidine-2-carboxylic acid"            
VD6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-1-(phenylmethyl)piperidine-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VD6 "Create component" 2022-08-29 RCSB 
VD6 "Initial release"  2022-11-02 RCSB 
# 
