data_UP6
#

_chem_comp.id                                   UP6
_chem_comp.name                                 "6-AZA URIDINE 5'-MONOPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H12 N3 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        6-AZA-UMP
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2000-02-02
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       325.169
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    UP6
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1DVJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
UP6  N1      N1    N  0  1  Y  N  N  53.335  75.495   2.023   0.010   0.147   2.391  N1      UP6   1  
UP6  C2      C2    C  0  1  Y  N  N  52.823  74.700   0.993  -0.663   1.081   3.085  C2      UP6   2  
UP6  N3      N3    N  0  1  Y  N  N  53.110  75.112  -0.293  -1.454   0.740   4.120  N3      UP6   3  
UP6  C4      C4    C  0  1  Y  N  N  53.870  76.265  -0.607  -1.572  -0.553   4.481  C4      UP6   4  
UP6  C5      C5    C  0  1  Y  N  N  54.345  77.015   0.517  -0.835  -1.575   3.731  C5      UP6   5  
UP6  N6      N6    N  0  1  Y  N  N  54.098  76.655   1.752  -0.083  -1.207   2.732  N6      UP6   6  
UP6  O2      O2    O  0  1  N  N  N  52.193  73.699   1.263  -0.563   2.251   2.768  O2      UP6   7  
UP6  O4      O4    O  0  1  N  N  N  54.077  76.532  -1.777  -2.281  -0.869   5.418  O4      UP6   8  
UP6  "C1'"   C1*   C  0  1  N  N  R  53.144  75.133   3.423   0.858   0.553   1.268  "C1'"   UP6   9  
UP6  "C2'"   C2*   C  0  1  N  N  R  51.742  74.939   3.962   2.046  -0.421   1.111  "C2'"   UP6  10  
UP6  "C3'"   C3*   C  0  1  N  N  S  51.964  73.892   5.046   2.238  -0.536  -0.417  "C3'"   UP6  11  
UP6  "C4'"   C4*   C  0  1  N  N  R  53.093  73.058   4.495   1.143   0.379  -1.006  "C4'"   UP6  12  
UP6  "O2'"   O2*   O  0  1  N  N  N  51.197  76.165   4.446   3.221   0.114   1.724  "O2'"   UP6  13  
UP6  "O3'"   O3*   O  0  1  N  N  N  52.317  74.541   6.256   3.536  -0.073  -0.795  "O3'"   UP6  14  
UP6  "O4'"   O4*   O  0  1  N  N  N  53.867  73.949   3.707   0.131   0.451   0.024  "O4'"   UP6  15  
UP6  "C5'"   C5*   C  0  1  N  N  N  52.761  71.824   3.671   0.561  -0.228  -2.283  "C5'"   UP6  16  
UP6  "O5'"   O5*   O  0  1  N  N  N  51.935  71.040   4.531  -0.497   0.601  -2.766  "O5'"   UP6  17  
UP6  P       P     P  0  1  N  N  N  51.261  69.641   4.007  -1.061  -0.094  -4.104  P       UP6  18  
UP6  O1P     O1P   O  0  1  N  N  N  50.546  69.873   2.689  -1.561  -1.449  -3.782  O1P     UP6  19  
UP6  O2P     O2P   O  0  1  N  N  N  50.309  69.308   5.084  -2.262   0.793  -4.705  O2P     UP6  20  
UP6  O3P     O3P   O  0  1  N  N  N  52.363  68.521   3.884   0.121  -0.203  -5.191  O3P     UP6  21  
UP6  HN3     HN3   H  0  1  N  N  N  52.741  74.535  -1.049  -1.936   1.426   4.608  HN3     UP6  22  
UP6  H5      H5    H  0  1  N  N  N  54.944  77.936   0.424  -0.915  -2.617   4.002  H5      UP6  23  
UP6  "H1'"   H1*   H  0  1  N  N  N  53.508  76.051   3.940   1.219   1.571   1.414  "H1'"   UP6  24  
UP6  "H2'"   H2*   H  0  1  N  N  N  50.991  74.612   3.205   1.802  -1.393   1.540  "H2'"   UP6  25  
UP6  "H3'"   H3*   H  0  1  N  N  N  51.068  73.270   5.280   2.092  -1.566  -0.743  "H3'"   UP6  26  
UP6  "H4'"   H4*   H  0  1  N  N  N  53.603  72.611   5.380   1.549   1.370  -1.209  "H4'"   UP6  27  
UP6  "HO2'"  *HO2  H  0  0  N  N  N  50.317  76.043   4.784   3.939  -0.506   1.542  "HO2'"  UP6  28  
UP6  "HO3'"  *HO3  H  0  0  N  N  N  52.455  73.888   6.932   4.177  -0.663  -0.375  "HO3'"  UP6  29  
UP6  "H5'1"  1H5*  H  0  0  N  N  N  52.305  72.046   2.678   1.341  -0.299  -3.041  "H5'1"  UP6  30  
UP6  "H5'2"  2H5*  H  0  0  N  N  N  53.653  71.283   3.277   0.172  -1.223  -2.067  "H5'2"  UP6  31  
UP6  HOP2    2HOP  H  0  0  N  N  N  49.918  68.497   4.780  -2.570   0.342  -5.503  HOP2    UP6  32  
UP6  HOP3    3HOP  H  0  0  N  N  N  51.972  67.710   3.580   0.418   0.698  -5.373  HOP3    UP6  33  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
UP6  N1     C2      SING  Y  N   1  
UP6  N1     N6      SING  Y  N   2  
UP6  N1     "C1'"   SING  N  N   3  
UP6  C2     N3      SING  Y  N   4  
UP6  C2     O2      DOUB  N  N   5  
UP6  N3     C4      SING  Y  N   6  
UP6  N3     HN3     SING  N  N   7  
UP6  C4     C5      SING  Y  N   8  
UP6  C4     O4      DOUB  N  N   9  
UP6  C5     N6      DOUB  Y  N  10  
UP6  C5     H5      SING  N  N  11  
UP6  "C1'"  "C2'"   SING  N  N  12  
UP6  "C1'"  "O4'"   SING  N  N  13  
UP6  "C1'"  "H1'"   SING  N  N  14  
UP6  "C2'"  "C3'"   SING  N  N  15  
UP6  "C2'"  "O2'"   SING  N  N  16  
UP6  "C2'"  "H2'"   SING  N  N  17  
UP6  "C3'"  "C4'"   SING  N  N  18  
UP6  "C3'"  "O3'"   SING  N  N  19  
UP6  "C3'"  "H3'"   SING  N  N  20  
UP6  "C4'"  "O4'"   SING  N  N  21  
UP6  "C4'"  "C5'"   SING  N  N  22  
UP6  "C4'"  "H4'"   SING  N  N  23  
UP6  "O2'"  "HO2'"  SING  N  N  24  
UP6  "O3'"  "HO3'"  SING  N  N  25  
UP6  "C5'"  "O5'"   SING  N  N  26  
UP6  "C5'"  "H5'1"  SING  N  N  27  
UP6  "C5'"  "H5'2"  SING  N  N  28  
UP6  "O5'"  P       SING  N  N  29  
UP6  P      O1P     DOUB  N  N  30  
UP6  P      O2P     SING  N  N  31  
UP6  P      O3P     SING  N  N  32  
UP6  O2P    HOP2    SING  N  N  33  
UP6  O3P    HOP3    SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
UP6  SMILES            ACDLabs               10.04  "O=C1N(N=CC(=O)N1)C2OC(C(O)C2O)COP(=O)(O)O"  
UP6  SMILES_CANONICAL  CACTVS                3.341  "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2N=CC(=O)NC2=O"  
UP6  SMILES            CACTVS                3.341  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2N=CC(=O)NC2=O"  
UP6  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=NN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"  
UP6  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=NN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O"  
UP6  InChI             InChI                 1.03   "InChI=1S/C8H12N3O9P/c12-4-1-9-11(8(15)10-4)7-6(14)5(13)3(20-7)2-19-21(16,17)18/h1,3,5-7,13-14H,2H2,(H,10,12,15)(H2,16,17,18)/t3-,5-,6-,7-/m1/s1"  
UP6  InChIKey          InChI                 1.03   LRVZOSYMNMNQFR-SHUUEZRQSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
UP6  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-(5-O-phosphono-beta-D-ribofuranosyl)-1,2,4-triazine-3,5(2H,4H)-dione"  
UP6  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(3,5-dioxo-1,2,4-triazin-2-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
UP6  "Create component"   2000-02-02  RCSB  
UP6  "Modify descriptor"  2011-06-04  RCSB  
UP6  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     UP6
_pdbx_chem_comp_synonyms.name        6-AZA-UMP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
