data_S06
#

_chem_comp.id                                   S06
_chem_comp.name                                 "(3S,5R,7R,8S,9S,10R)-7-(hydroxymethyl)-3-(2-naphthyl)-1,6-dioxa-2-azaspiro[4.5]decane-8,9,10-triol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H21 N O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(1R)-3'-(2-naphthyl)-spiro[1,5-anhydro-D-glucitol-1,5'-isoxazoline]"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-09-04
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       347.362
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S06
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2QRP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S06  C10  C10  C  0  1  Y  N  N  36.269  24.615  30.488   2.987   1.007   0.250  C10  S06   1  
S06  C11  C11  C  0  1  Y  N  N  36.920  25.113  31.624   4.343   0.641   0.284  C11  S06   2  
S06  C12  C12  C  0  1  Y  N  N  38.291  25.355  31.581   5.313   1.487   0.848  C12  S06   3  
S06  C13  C13  C  0  1  Y  N  N  38.930  25.850  32.722   6.618   1.099   0.864  C13  S06   4  
S06  C14  C14  C  0  1  Y  N  N  38.213  26.105  33.894   7.009  -0.126   0.328  C14  S06   5  
S06  C15  C15  C  0  1  Y  N  N  36.841  25.867  33.939   6.097  -0.971  -0.227  C15  S06   6  
S06  C16  C16  C  0  1  Y  N  N  36.198  25.373  32.799   4.741  -0.606  -0.261  C16  S06   7  
S06  C17  C17  C  0  1  Y  N  N  34.828  25.128  32.840   3.770  -1.452  -0.825  C17  S06   8  
S06  C18  C18  C  0  1  Y  N  N  34.185  24.637  31.704   2.466  -1.064  -0.840  C18  S06   9  
S06  C9   C9   C  0  1  Y  N  N  34.897  24.369  30.530   2.075   0.162  -0.305  C9   S06  10  
S06  C8   C8   C  0  1  N  N  S  34.217  23.895  29.403   0.621   0.557  -0.339  C8   S06  11  
S06  C7   C7   C  0  1  N  N  N  34.814  23.202  28.181  -0.174  -0.182   0.770  C7   S06  12  
S06  N1   N1   N  0  1  N  N  N  32.908  24.023  29.204  -0.019   0.086  -1.589  N1   S06  13  
S06  O7   O7   O  0  1  N  N  N  32.478  23.474  27.961  -1.369  -0.387  -1.260  O7   S06  14  
S06  C1   C1   C  0  1  N  N  R  33.579  22.729  27.413  -1.589  -0.220   0.151  C1   S06  15  
S06  O5   O5   O  0  1  N  N  N  33.386  21.318  27.642  -2.266   1.004   0.412  O5   S06  16  
S06  C5   C5   C  0  1  N  N  R  32.173  20.793  27.025  -3.580   1.078  -0.147  C5   S06  17  
S06  C6   C6   C  0  1  N  N  N  32.014  19.337  27.459  -4.205   2.432   0.196  C6   S06  18  
S06  O6   O6   O  0  1  N  N  N  33.063  18.551  26.878  -3.464   3.474  -0.441  O6   S06  19  
S06  C4   C4   C  0  1  N  N  S  32.279  20.965  25.497  -4.443  -0.045   0.433  C4   S06  20  
S06  O4   O4   O  0  1  N  N  N  31.108  20.451  24.844  -5.743  -0.001  -0.159  O4   S06  21  
S06  C3   C3   C  0  1  N  N  S  32.496  22.441  25.132  -3.787  -1.395   0.129  C3   S06  22  
S06  O3   O3   O  0  1  N  N  N  32.723  22.560  23.722  -4.555  -2.444   0.723  O3   S06  23  
S06  C2   C2   C  0  1  N  N  R  33.707  23.009  25.902  -2.370  -1.403   0.713  C2   S06  24  
S06  O2   O2   O  0  1  N  N  N  33.847  24.417  25.664  -1.713  -2.621   0.357  O2   S06  25  
S06  H10  H10  H  0  1  N  N  N  36.827  24.422  29.584   2.668   1.952   0.665  H10  S06  26  
S06  H12  H12  H  0  1  N  N  N  38.853  25.163  30.679   5.025   2.440   1.266  H12  S06  27  
S06  H13  H13  H  0  1  N  N  N  39.993  26.038  32.697   7.361   1.751   1.298  H13  S06  28  
S06  H14  H14  H  0  1  N  N  N  38.723  26.487  34.766   8.050  -0.410   0.353  H14  S06  29  
S06  H15  H15  H  0  1  N  N  N  36.281  26.061  34.842   6.415  -1.918  -0.639  H15  S06  30  
S06  H17  H17  H  0  1  N  N  N  34.268  25.317  33.744   4.059  -2.405  -1.244  H17  S06  31  
S06  H18  H18  H  0  1  N  N  N  33.120  24.461  31.731   1.722  -1.716  -1.274  H18  S06  32  
S06  H8   H8   H  0  1  N  N  N  34.867  24.010  30.283   0.515   1.637  -0.235  H8   S06  33  
S06  H71  1H7  H  0  1  N  N  N  35.461  22.360  28.468   0.213  -1.189   0.925  H71  S06  34  
S06  H72  2H7  H  0  1  N  N  N  35.463  23.862  27.587  -0.168   0.386   1.701  H72  S06  35  
S06  HN1  HN1  H  0  1  N  N  N  32.683  24.997  29.212   0.525  -0.646  -2.021  HN1  S06  36  
S06  H5   H5   H  0  1  N  N  N  31.273  21.337  27.346  -3.520   0.969  -1.230  H5   S06  37  
S06  H61  1H6  H  0  1  N  N  N  31.039  18.957  27.120  -5.237   2.454  -0.154  H61  S06  38  
S06  H62  2H6  H  0  1  N  N  N  32.070  19.272  28.556  -4.184   2.579   1.276  H62  S06  39  
S06  HO6  HO6  H  0  1  N  N  N  32.861  18.377  25.966  -3.804   4.362  -0.267  HO6  S06  40  
S06  H4   H4   H  0  1  N  N  N  33.149  20.390  25.147  -4.530   0.083   1.512  H4   S06  41  
S06  HO4  HO4  H  0  1  N  N  N  30.413  20.337  25.482  -6.216   0.828  -0.008  HO4  S06  42  
S06  H3   H3   H  0  1  N  N  N  31.598  23.012  25.409  -3.738  -1.542  -0.950  H3   S06  43  
S06  HO3  HO3  H  0  1  N  N  N  31.889  22.586  23.268  -5.466  -2.493   0.404  HO3  S06  44  
S06  H2   H2   H  0  1  N  N  N  34.611  22.502  25.532  -2.423  -1.321   1.799  H2   S06  45  
S06  HO2  HO2  H  0  1  N  N  N  33.878  24.877  26.494  -2.158  -3.417   0.679  HO2  S06  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S06  O3   C3   SING  N  N   1  
S06  O4   C4   SING  N  N   2  
S06  C3   C4   SING  N  N   3  
S06  C3   C2   SING  N  N   4  
S06  C4   C5   SING  N  N   5  
S06  O2   C2   SING  N  N   6  
S06  C2   C1   SING  N  N   7  
S06  O6   C6   SING  N  N   8  
S06  C5   C6   SING  N  N   9  
S06  C5   O5   SING  N  N  10  
S06  C1   O5   SING  N  N  11  
S06  C1   O7   SING  N  N  12  
S06  C1   C7   SING  N  N  13  
S06  O7   N1   SING  N  N  14  
S06  C7   C8   SING  N  N  15  
S06  N1   C8   SING  N  N  16  
S06  C8   C9   SING  N  N  17  
S06  C10  C9   DOUB  Y  N  18  
S06  C10  C11  SING  Y  N  19  
S06  C9   C18  SING  Y  N  20  
S06  C12  C11  DOUB  Y  N  21  
S06  C12  C13  SING  Y  N  22  
S06  C11  C16  SING  Y  N  23  
S06  C18  C17  DOUB  Y  N  24  
S06  C13  C14  DOUB  Y  N  25  
S06  C16  C17  SING  Y  N  26  
S06  C16  C15  DOUB  Y  N  27  
S06  C14  C15  SING  Y  N  28  
S06  C10  H10  SING  N  N  29  
S06  C12  H12  SING  N  N  30  
S06  C13  H13  SING  N  N  31  
S06  C14  H14  SING  N  N  32  
S06  C15  H15  SING  N  N  33  
S06  C17  H17  SING  N  N  34  
S06  C18  H18  SING  N  N  35  
S06  C8   H8   SING  N  N  36  
S06  C7   H71  SING  N  N  37  
S06  C7   H72  SING  N  N  38  
S06  N1   HN1  SING  N  N  39  
S06  C5   H5   SING  N  N  40  
S06  C6   H61  SING  N  N  41  
S06  C6   H62  SING  N  N  42  
S06  O6   HO6  SING  N  N  43  
S06  C4   H4   SING  N  N  44  
S06  O4   HO4  SING  N  N  45  
S06  C3   H3   SING  N  N  46  
S06  O3   HO3  SING  N  N  47  
S06  C2   H2   SING  N  N  48  
S06  O2   HO2  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S06  SMILES            ACDLabs               10.04  "O1C(C(O)C(O)C(O)C14ONC(c3cc2ccccc2cc3)C4)CO"  
S06  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@@]2(C[C@H](NO2)c3ccc4ccccc4c3)[C@H](O)[C@@H](O)[C@@H]1O"  
S06  SMILES            CACTVS                3.341  "OC[CH]1O[C]2(C[CH](NO2)c3ccc4ccccc4c3)[CH](O)[CH](O)[CH]1O"  
S06  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1ccc2cc(ccc2c1)C3C[C@]4([C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)ON3"  
S06  SMILES            "OpenEye OEToolkits"  1.5.0  "c1ccc2cc(ccc2c1)C3CC4(C(C(C(C(O4)CO)O)O)O)ON3"  
S06  InChI             InChI                 1.03   "InChI=1S/C18H21NO6/c20-9-14-15(21)16(22)17(23)18(24-14)8-13(19-25-18)12-6-5-10-3-1-2-4-11(10)7-12/h1-7,13-17,19-23H,8-9H2/t13-,14+,15+,16-,17+,18+/m0/s1"  
S06  InChIKey          InChI                 1.03   ZCJBDRSKHARECB-PYTCMNEWSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S06  "SYSTEMATIC NAME"  ACDLabs               10.04  "(3S,5R,7R,8S,9S,10R)-7-(hydroxymethyl)-3-naphthalen-2-yl-1,6-dioxa-2-azaspiro[4.5]decane-8,9,10-triol"  
S06  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(5R,6R,7S,8S,9R)-9-(hydroxymethyl)-3-naphthalen-2-yl-1,10-dioxa-2-azaspiro[4.5]decane-6,7,8-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S06  "Create component"      2007-09-04  RCSB  
S06  "Modify aromatic_flag"  2011-06-04  RCSB  
S06  "Modify descriptor"     2011-06-04  RCSB  
S06  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     S06
_pdbx_chem_comp_synonyms.name        "(1R)-3'-(2-naphthyl)-spiro[1,5-anhydro-D-glucitol-1,5'-isoxazoline]"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
