data_MF6
# 
_chem_comp.id                                    MF6 
_chem_comp.name                                  "(1S,3R,4R,6R,9S,11R,14R,15S,16R,18R)-4-(6-amino-9H-purin-9-yl)-9,11,15,16,18-pentahydroxy-2,5,8,10,12,17-hexaoxa-9lambda~5~,11lambda~5~-diphosphatricyclo[12.2.1.1~3,6~]octadecane-9,11-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H21 N5 O13 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;1'-2' gcADPR
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-16 
_chem_comp.pdbx_modified_date                    2022-09-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        541.300 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MF6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7UAW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MF6 C17 C1  C 0 1 N N S -9.113  22.214 -41.605 1.598  -3.879 -0.208 C17 MF6 1  
MF6 C21 C2  C 0 1 N N R -5.640  22.288 -44.862 -0.323 0.679  -1.435 C21 MF6 2  
MF6 C24 C3  C 0 1 N N N -3.317  22.553 -43.994 0.387  2.746  -0.198 C24 MF6 3  
MF6 C02 C4  C 0 1 Y N N -5.498  17.922 -39.865 -6.716 0.671  0.063  C02 MF6 4  
MF6 C04 C5  C 0 1 Y N N -6.112  20.160 -39.760 -6.059 -1.536 0.229  C04 MF6 5  
MF6 C06 C6  C 0 1 Y N N -5.667  19.227 -41.872 -4.392 0.047  0.215  C06 MF6 6  
MF6 C07 C7  C 0 1 Y N N -5.389  18.018 -41.286 -5.365 1.055  0.104  C07 MF6 7  
MF6 C09 C8  C 0 1 Y N N -5.131  17.808 -43.440 -3.427 2.028  0.135  C09 MF6 8  
MF6 C11 C9  C 0 1 N N R -5.628  20.067 -44.257 -1.860 0.055  0.336  C11 MF6 9  
MF6 C12 C10 C 0 1 N N R -6.242  21.385 -43.865 -1.388 -0.371 -1.061 C12 MF6 10 
MF6 C14 C11 C 0 1 N N S -8.398  22.461 -43.758 -0.052 -2.091 0.027  C14 MF6 11 
MF6 C16 C12 C 0 1 N N R -8.272  23.461 -41.667 2.264  -2.517 0.043  C16 MF6 12 
MF6 C19 C13 C 0 1 N N R -9.652  22.166 -42.963 0.096  -3.623 0.010  C19 MF6 13 
MF6 C23 C14 C 0 1 N N R -4.209  21.827 -44.949 0.128  1.243  -0.078 C23 MF6 14 
MF6 C32 C15 C 0 1 N N N -7.222  23.442 -40.606 3.352  -2.266 -1.003 C32 MF6 15 
MF6 N01 N1  N 0 1 N N N -5.221  16.662 -39.185 -7.719 1.619  -0.045 N01 MF6 16 
MF6 N03 N2  N 0 1 Y N N -5.858  18.995 -39.168 -7.009 -0.624 0.126  N03 MF6 17 
MF6 N05 N3  N 0 1 Y N N -6.018  20.275 -41.070 -4.781 -1.223 0.276  N05 MF6 18 
MF6 N08 N4  N 0 1 Y N N -5.058  17.152 -42.279 -4.709 2.239  0.060  N08 MF6 19 
MF6 N10 N5  N 0 1 Y N N -5.512  19.074 -43.216 -3.181 0.691  0.232  N10 MF6 20 
MF6 O13 O1  O 0 1 N N N -7.678  21.285 -43.937 -0.852 -1.683 -1.076 O13 MF6 21 
MF6 O15 O2  O 0 1 N N N -7.677  23.459 -42.978 1.252  -1.516 -0.061 O15 MF6 22 
MF6 O18 O3  O 0 1 N N N -10.130 22.377 -40.623 2.079  -4.848 0.726  O18 MF6 23 
MF6 O20 O4  O 0 1 N N N -10.641 23.199 -43.117 -0.328 -4.174 1.258  O20 MF6 24 
MF6 O22 O5  O 0 1 N N N -6.225  22.062 -46.142 0.768  0.073  -2.125 O22 MF6 25 
MF6 O25 O6  O 0 1 N N N -3.502  22.002 -42.725 1.723  2.964  -0.656 O25 MF6 26 
MF6 O27 O7  O 0 1 N N N -2.967  22.093 -40.109 3.853  4.162  0.313  O27 MF6 27 
MF6 O28 O8  O 0 1 N N N -4.063  24.182 -41.340 3.947  1.607  -0.298 O28 MF6 28 
MF6 O30 O9  O 0 1 N N N -4.798  24.385 -38.717 5.714  -0.251 0.286  O30 MF6 29 
MF6 O31 O10 O 0 1 N N N -6.588  24.686 -40.639 3.580  -0.861 -1.125 O31 MF6 30 
MF6 O33 O11 O 0 1 N N N -4.710  26.237 -40.195 3.412  -0.253 1.321  O33 MF6 31 
MF6 O34 O12 O 0 1 N N N -1.743  23.478 -41.681 2.587  2.442  1.658  O34 MF6 32 
MF6 O35 O13 O 0 1 N N N -4.278  20.409 -44.630 -0.922 0.997  0.860  O35 MF6 33 
MF6 P26 P1  P 0 1 N N N -3.092  22.865 -41.405 3.017  2.786  0.285  P26 MF6 34 
MF6 P29 P2  P 0 1 N N N -5.019  24.760 -40.161 4.147  0.052  0.073  P29 MF6 35 
MF6 H1  H1  H 0 1 N N N -8.484  21.336 -41.397 1.784  -4.213 -1.228 H1  MF6 36 
MF6 H2  H2  H 0 1 N N N -5.702  23.341 -44.549 -0.769 1.466  -2.044 H2  MF6 37 
MF6 H3  H3  H 0 1 N N N -2.267  22.436 -44.302 -0.315 3.181  -0.910 H3  MF6 38 
MF6 H4  H4  H 0 1 N N N -3.578  23.621 -43.978 0.254  3.217  0.775  H4  MF6 39 
MF6 H5  H5  H 0 1 N N N -6.396  21.015 -39.164 -6.341 -2.577 0.277  H5  MF6 40 
MF6 H6  H6  H 0 1 N N N -4.916  17.384 -44.410 -2.670 2.798  0.122  H6  MF6 41 
MF6 H7  H7  H 0 1 N N N -6.170  19.653 -45.120 -1.934 -0.808 0.995  H7  MF6 42 
MF6 H8  H8  H 0 1 N N N -5.919  21.663 -42.851 -2.227 -0.301 -1.765 H8  MF6 43 
MF6 H9  H9  H 0 1 N N N -8.686  22.890 -44.729 -0.513 -1.793 0.970  H9  MF6 44 
MF6 H10 H10 H 0 1 N N N -8.914  24.345 -41.537 2.701  -2.502 1.042  H10 MF6 45 
MF6 H11 H11 H 0 1 N N N -10.050 21.171 -43.209 -0.484 -4.047 -0.809 H11 MF6 46 
MF6 H12 H12 H 0 1 N N N -3.841  21.967 -45.976 1.037  0.737  0.248  H12 MF6 47 
MF6 H13 H13 H 0 1 N N N -7.683  23.279 -39.621 4.272  -2.762 -0.698 H13 MF6 48 
MF6 H14 H14 H 0 1 N N N -6.495  22.642 -40.808 3.026  -2.663 -1.965 H14 MF6 49 
MF6 H15 H15 H 0 1 N N N -5.349  16.779 -38.200 -8.647 1.341  -0.077 H15 MF6 50 
MF6 H16 H16 H 0 1 N N N -5.846  15.958 -39.521 -7.492 2.561  -0.090 H16 MF6 51 
MF6 H17 H17 H 0 1 N N N -9.736  22.403 -39.759 1.673  -5.720 0.632  H17 MF6 52 
MF6 H18 H18 H 0 1 N N N -11.411 22.980 -42.605 -1.256 -4.005 1.468  H18 MF6 53 
MF6 H19 H19 H 0 1 N N N -7.133  22.341 -46.129 1.464  0.693  -2.382 H19 MF6 54 
MF6 H20 H20 H 0 1 N N N -2.081  22.173 -39.776 4.648  4.127  0.862  H20 MF6 55 
MF6 H21 H21 H 0 1 N N N -4.531  25.154 -38.227 6.122  0.266  0.994  H21 MF6 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MF6 O22 C21 SING N N 1  
MF6 C23 C21 SING N N 2  
MF6 C23 O35 SING N N 3  
MF6 C23 C24 SING N N 4  
MF6 C21 C12 SING N N 5  
MF6 O35 C11 SING N N 6  
MF6 C11 C12 SING N N 7  
MF6 C11 N10 SING N N 8  
MF6 C24 O25 SING N N 9  
MF6 O13 C12 SING N N 10 
MF6 O13 C14 SING N N 11 
MF6 C14 O15 SING N N 12 
MF6 C14 C19 SING N N 13 
MF6 C09 N10 SING Y N 14 
MF6 C09 N08 DOUB Y N 15 
MF6 N10 C06 SING Y N 16 
MF6 O20 C19 SING N N 17 
MF6 O15 C16 SING N N 18 
MF6 C19 C17 SING N N 19 
MF6 O25 P26 SING N N 20 
MF6 N08 C07 SING Y N 21 
MF6 C06 C07 DOUB Y N 22 
MF6 C06 N05 SING Y N 23 
MF6 O34 P26 DOUB N N 24 
MF6 C16 C17 SING N N 25 
MF6 C16 C32 SING N N 26 
MF6 C17 O18 SING N N 27 
MF6 P26 O28 SING N N 28 
MF6 P26 O27 SING N N 29 
MF6 O28 P29 SING N N 30 
MF6 C07 C02 SING Y N 31 
MF6 N05 C04 DOUB Y N 32 
MF6 O31 C32 SING N N 33 
MF6 O31 P29 SING N N 34 
MF6 O33 P29 DOUB N N 35 
MF6 P29 O30 SING N N 36 
MF6 C02 N01 SING N N 37 
MF6 C02 N03 DOUB Y N 38 
MF6 C04 N03 SING Y N 39 
MF6 C17 H1  SING N N 40 
MF6 C21 H2  SING N N 41 
MF6 C24 H3  SING N N 42 
MF6 C24 H4  SING N N 43 
MF6 C04 H5  SING N N 44 
MF6 C09 H6  SING N N 45 
MF6 C11 H7  SING N N 46 
MF6 C12 H8  SING N N 47 
MF6 C14 H9  SING N N 48 
MF6 C16 H10 SING N N 49 
MF6 C19 H11 SING N N 50 
MF6 C23 H12 SING N N 51 
MF6 C32 H13 SING N N 52 
MF6 C32 H14 SING N N 53 
MF6 N01 H15 SING N N 54 
MF6 N01 H16 SING N N 55 
MF6 O18 H17 SING N N 56 
MF6 O20 H18 SING N N 57 
MF6 O22 H19 SING N N 58 
MF6 O27 H20 SING N N 59 
MF6 O30 H21 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MF6 SMILES           ACDLabs              12.01 "Nc1ncnc2c1ncn2C1OC2COP(=O)(O)OP(=O)(O)OCC3OC(OC1C2O)C(O)C3O"                                                                                                                                                                          
MF6 InChI            InChI                1.03  "InChI=1S/C15H21N5O13P2/c16-12-7-13(18-3-17-12)20(4-19-7)14-11-9(22)6(30-14)2-29-35(26,27)33-34(24,25)28-1-5-8(21)10(23)15(31-5)32-11/h3-6,8-11,14-15,21-23H,1-2H2,(H,24,25)(H,26,27)(H2,16,17,18)/t5-,6-,8-,9-,10-,11-,14-,15+/m1/s1" 
MF6 InChIKey         InChI                1.03  FWMYLCHFFTZWAN-ZQSHOCFMSA-N                                                                                                                                                                                                            
MF6 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P](O)(=O)O[P](O)(=O)OC[C@H]5O[C@@H](O[C@@H]3[C@@H]4O)[C@H](O)[C@@H]5O"                                                                                                                              
MF6 SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](O)(=O)O[P](O)(=O)OC[CH]5O[CH](O[CH]3[CH]4O)[CH](O)[CH]5O"                                                                                                                                            
MF6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)COP(=O)(OP(=O)(OC[C@@H]5[C@H]([C@H]([C@@H](O5)O4)O)O)O)O)O)N"                                                                                                                           
MF6 SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C4C(C(O3)COP(=O)(OP(=O)(OCC5C(C(C(O5)O4)O)O)O)O)O)N"                                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MF6 "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,3R,4R,6R,9S,11R,14R,15S,16R,18R)-4-(6-amino-9H-purin-9-yl)-9,11,15,16,18-pentahydroxy-2,5,8,10,12,17-hexaoxa-9lambda~5~,11lambda~5~-diphosphatricyclo[12.2.1.1~3,6~]octadecane-9,11-dione"                             
MF6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},3~{R},4~{R},6~{R},14~{R},15~{S},16~{R},18~{R})-4-(6-aminopurin-9-yl)-9,11-bis(oxidanyl)-9,11-bis(oxidanylidene)-2,5,8,10,12,17-hexaoxa-9$l^{5},11$l^{5}-diphosphatricyclo[12.2.1.1^{3,6}]octadecane-15,16,18-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MF6 "Create component" 2022-03-16 RCSB 
MF6 "Initial release"  2022-10-05 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      MF6 
_pdbx_chem_comp_synonyms.name         
;1'-2' gcADPR
;
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
