data_MA6
# 
_chem_comp.id                                    MA6 
_chem_comp.name                                  "6N-DIMETHYLADENOSINE-5'-MONOPHOSHATE" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C12 H18 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-03-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        375.274 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     MA6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1WTS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MA6 C2     C2     C 0 1 Y N N N N N 15.501 11.355 2.515  4.607  -1.372 -0.930 C2     MA6 1  
MA6 C4     C4     C 0 1 Y N N N N N 16.583 12.568 1.043  2.599  -0.447 -0.301 C4     MA6 2  
MA6 C5     C5     C 0 1 Y N N N N N 17.496 13.017 1.984  3.281  0.684  0.176  C5     MA6 3  
MA6 P      P      P 0 1 N N N N N N 19.859 14.290 -4.633 -5.132 1.291  -0.093 P      MA6 4  
MA6 OP1    O1P    O 0 1 N N N N N N 20.887 15.031 -5.411 -6.265 0.430  0.314  OP1    MA6 5  
MA6 OP2    O2P    O 0 1 N N N N N N 19.177 13.155 -5.299 -5.570 2.193  -1.353 OP2    MA6 6  
MA6 OP3    O3P    O 0 1 N Y N N N N 20.608 13.756 -3.299 -4.717 2.248  1.133  OP3    MA6 7  
MA6 "O5'"  "O5'"  O 0 1 N N N N N N 18.777 15.347 -4.042 -3.878 0.369  -0.503 "O5'"  MA6 8  
MA6 "C5'"  "C5'"  C 0 1 N N N N N N 17.365 15.156 -3.766 -3.322 -0.620 0.365  "C5'"  MA6 9  
MA6 "C4'"  "C4'"  C 0 1 N N R N N N 16.765 13.752 -3.593 -2.148 -1.310 -0.332 "C4'"  MA6 10 
MA6 "O4'"  "O4'"  O 0 1 N N N N N N 17.332 13.026 -2.462 -1.074 -0.374 -0.524 "O4'"  MA6 11 
MA6 "C1'"  "C1'"  C 0 1 N N R N N N 16.334 12.900 -1.446 0.159  -1.113 -0.391 "C1'"  MA6 12 
MA6 N9     N9     N 0 1 Y N N N N N 16.959 13.139 -0.147 1.268  -0.214 -0.065 N9     MA6 13 
MA6 N3     N3     N 0 1 Y N N N N N 15.551 11.731 1.243  3.296  -1.442 -0.841 N3     MA6 14 
MA6 N1     N1     N 0 1 Y N N N N N 16.309 11.695 3.523  5.292  -0.329 -0.495 N1     MA6 15 
MA6 C6     C6     C 0 1 Y N N N N N 17.349 12.535 3.307  4.681  0.713  0.059  C6     MA6 16 
MA6 N6     N6     N 0 1 N N N N N N 18.143 12.828 4.361  5.408  1.801  0.511  N6     MA6 17 
MA6 C9     C9     C 0 1 N N N N N N 19.299 13.722 4.220  6.846  1.605  0.284  C9     MA6 18 
MA6 C10    C10    C 0 1 N N N N N N 17.966 12.248 5.704  4.940  3.044  -0.117 C10    MA6 19 
MA6 N7     N7     N 0 1 Y N N N N N 18.411 13.885 1.389  2.349  1.534  0.669  N7     MA6 20 
MA6 C8     C8     C 0 1 Y N N N N N 18.040 13.932 0.129  1.166  1.009  0.529  C8     MA6 21 
MA6 "C2'"  "C2'"  C 0 1 N N R N N N 15.212 13.860 -1.831 -0.124 -2.080 0.787  "C2'"  MA6 22 
MA6 "O2'"  "O2'"  O 0 1 N N N N N N 14.001 13.534 -1.152 0.709  -3.239 0.707  "O2'"  MA6 23 
MA6 "C3'"  "C3'"  C 0 1 N N S N N N 15.247 13.604 -3.353 -1.609 -2.451 0.553  "C3'"  MA6 24 
MA6 "O3'"  "O3'"  O 0 1 N N N N N N 14.907 12.285 -3.860 -1.711 -3.703 -0.128 "O3'"  MA6 25 
MA6 H2     H2     H 0 1 N N N N N N 14.696 10.681 2.770  5.144  -2.199 -1.370 H2     MA6 26 
MA6 HOP2   HOP2   H 0 0 N N N N N N 19.514 13.056 -6.182 -6.322 2.776  -1.177 HOP2   MA6 27 
MA6 "H5'"  "H5'"  H 0 1 N N N N N N 17.154 15.701 -2.834 -2.971 -0.144 1.281  "H5'"  MA6 28 
MA6 "H5''" "H5''" H 0 0 N N N N N N 16.820 15.627 -4.597 -4.085 -1.359 0.610  "H5''" MA6 29 
MA6 "H4'"  "H4'"  H 0 1 N N N N N N 17.000 13.188 -4.508 -2.470 -1.706 -1.296 "H4'"  MA6 30 
MA6 "H1'"  "H1'"  H 0 1 N N N N N N 15.927 11.878 -1.462 0.372  -1.669 -1.304 "H1'"  MA6 31 
MA6 H91    H91    H 0 1 N N N N N N 19.804 13.825 5.192  7.031  1.480  -0.783 H91    MA6 32 
MA6 H92    H92    H 0 1 N N N N N N 20.000 13.301 3.485  7.393  2.475  0.648  H92    MA6 33 
MA6 H93    H93    H 0 1 N N N N N N 18.958 14.710 3.878  7.180  0.716  0.818  H93    MA6 34 
MA6 H101   H101   H 0 0 N N N N N N 18.737 12.646 6.380  3.888  3.200  0.125  H101   MA6 35 
MA6 H102   H102   H 0 0 N N N N N N 16.970 12.512 6.089  5.527  3.883  0.255  H102   MA6 36 
MA6 H103   H103   H 0 0 N N N N N N 18.059 11.153 5.646  5.056  2.970  -1.198 H103   MA6 37 
MA6 H8     H8     H 0 1 N N N N N N 18.538 14.536 -0.615 0.241  1.474  0.836  H8     MA6 38 
MA6 "H2'"  "H2'"  H 0 1 N N N N N N 15.520 14.896 -1.624 0.005  -1.575 1.744  "H2'"  MA6 39 
MA6 "HO2'" "HO2'" H 0 0 N N N N N N 13.320 14.145 -1.408 0.569  -3.874 1.423  "HO2'" MA6 40 
MA6 "H3'"  "H3'"  H 0 1 N N N N N N 14.699 14.395 -3.885 -2.148 -2.485 1.500  "H3'"  MA6 41 
MA6 "HO3'" "HO3'" H 0 0 N Y N N N N 13.977 12.130 -3.741 -1.386 -4.456 0.384  "HO3'" MA6 42 
MA6 HOP3   H1     H 0 1 N Y N N N N 21.517 14.031 -3.314 -3.978 2.841  0.937  H1     MA6 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MA6 C2    N3     DOUB Y N 1  
MA6 C2    N1     SING Y N 2  
MA6 C2    H2     SING N N 3  
MA6 C4    C5     DOUB Y N 4  
MA6 C4    N9     SING Y N 5  
MA6 C4    N3     SING Y N 6  
MA6 C5    C6     SING Y N 7  
MA6 C5    N7     SING Y N 8  
MA6 P     OP1    DOUB N N 9  
MA6 P     OP2    SING N N 10 
MA6 P     OP3    SING N N 11 
MA6 P     "O5'"  SING N N 12 
MA6 OP2   HOP2   SING N N 13 
MA6 "O5'" "C5'"  SING N N 14 
MA6 "C5'" "C4'"  SING N N 15 
MA6 "C5'" "H5'"  SING N N 16 
MA6 "C5'" "H5''" SING N N 17 
MA6 "C4'" "O4'"  SING N N 18 
MA6 "C4'" "C3'"  SING N N 19 
MA6 "C4'" "H4'"  SING N N 20 
MA6 "O4'" "C1'"  SING N N 21 
MA6 "C1'" N9     SING N N 22 
MA6 "C1'" "C2'"  SING N N 23 
MA6 "C1'" "H1'"  SING N N 24 
MA6 N9    C8     SING Y N 25 
MA6 N1    C6     DOUB Y N 26 
MA6 C6    N6     SING N N 27 
MA6 N6    C9     SING N N 28 
MA6 N6    C10    SING N N 29 
MA6 C9    H91    SING N N 30 
MA6 C9    H92    SING N N 31 
MA6 C9    H93    SING N N 32 
MA6 C10   H101   SING N N 33 
MA6 C10   H102   SING N N 34 
MA6 C10   H103   SING N N 35 
MA6 N7    C8     DOUB Y N 36 
MA6 C8    H8     SING N N 37 
MA6 "C2'" "O2'"  SING N N 38 
MA6 "C2'" "C3'"  SING N N 39 
MA6 "C2'" "H2'"  SING N N 40 
MA6 "O2'" "HO2'" SING N N 41 
MA6 "C3'" "O3'"  SING N N 42 
MA6 "C3'" "H3'"  SING N N 43 
MA6 "O3'" "HO3'" SING N N 44 
MA6 OP3   HOP3   SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MA6 SMILES           ACDLabs              12.01 "CN(C)c1ncnc2c1ncn2C1OC(COP(=O)(O)O)C(O)C1O"                                                                                                                     
MA6 InChI            InChI                1.06  "InChI=1S/C12H18N5O7P/c1-16(2)10-7-11(14-4-13-10)17(5-15-7)12-9(19)8(18)6(24-12)3-23-25(20,21)22/h4-6,8-9,12,18-19H,3H2,1-2H3,(H2,20,21,22)/t6-,8-,9-,12-/m1/s1" 
MA6 InChIKey         InChI                1.06  OWRDTHWSVNWFAZ-WOUKDFQISA-N                                                                                                                                      
MA6 SMILES_CANONICAL CACTVS               3.385 "CN(C)c1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O"                                                                                               
MA6 SMILES           CACTVS               3.385 "CN(C)c1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O"                                                                                                     
MA6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O"                                                                                             
MA6 SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)c1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O"                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MA6 "SYSTEMATIC NAME" ACDLabs              12.01 
;N,N-dimethyladenosine 5'-(dihydrogen phosphate)
;
MA6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-[6-(dimethylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MA6 "Create component"  1999-07-08 RCSB 
MA6 "Modify descriptor" 2011-06-04 RCSB 
MA6 "Modify atom id"    2024-03-27 RCSB 
# 
