data_JM6
# 
_chem_comp.id                                    JM6 
_chem_comp.name                                  "N~5~-[4-(methylsulfanyl)butanimidoyl]-L-ornithine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H21 N3 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-09-15 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        247.358 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JM6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3JT6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JM6 C    C    C 0 1 N N N 17.459 -1.435 57.864 -6.082 -0.270 -0.087 C    JM6 1  
JM6 N    N    N 0 1 N N N 16.091 -0.336 56.213 -4.877 1.773  0.440  N    JM6 2  
JM6 C1   C1   C 0 1 N N N 11.458 -0.704 59.166 1.337  -0.165 0.047  C1   JM6 3  
JM6 C2   C2   C 0 1 N N N 10.908 -0.613 60.576 2.593  0.584  -0.320 C2   JM6 4  
JM6 C3   C3   C 0 1 N N N 10.296 0.699  60.998 3.815  -0.236 0.098  C3   JM6 5  
JM6 C4   C4   C 0 1 N N N 10.569 1.793  59.999 5.090  0.524  -0.273 C4   JM6 6  
JM6 S5   S5   S 0 1 N N N 11.880 2.692  60.734 6.539  -0.448 0.222  S5   JM6 7  
JM6 C6   C6   C 0 1 N N N 12.189 2.157  62.387 7.928  0.599  -0.293 C6   JM6 8  
JM6 CA   CA   C 0 1 N N S 16.648 -0.220 57.545 -4.830 0.530  -0.341 CA   JM6 9  
JM6 CB   CB   C 0 1 N N N 15.540 -0.104 58.586 -3.608 -0.290 0.077  CB   JM6 10 
JM6 CD   CD   C 0 1 N N N 13.430 0.712  59.253 -1.111 -0.350 0.123  CD   JM6 11 
JM6 NE   NE   N 0 1 N N N 12.220 0.243  58.604 0.110  0.378  -0.233 NE   JM6 12 
JM6 CG   CG   C 0 1 N N N 14.606 1.078  58.365 -2.333 0.470  -0.295 CG   JM6 13 
JM6 OA1  OA1  O 0 1 N N N 17.899 -1.657 59.014 -6.461 -1.218 -0.959 OA1  JM6 14 
JM6 OA2  OA2  O 0 1 N N N 17.665 -2.216 56.939 -6.742 -0.062 0.903  OA2  JM6 15 
JM6 NH1  NH1  N 0 1 N N N 11.166 -1.746 58.556 1.417  -1.319 0.625  NH1  JM6 16 
JM6 HN   HN   H 0 1 N N N 15.550 0.479  56.005 -4.941 1.577  1.428  HN   JM6 17 
JM6 HNA  HNA  H 0 1 N N N 16.833 -0.422 55.548 -4.079 2.357  0.239  HNA  JM6 18 
JM6 H2   H2   H 0 1 N N N 10.120 -1.376 60.662 2.616  0.748  -1.397 H2   JM6 19 
JM6 H2A  H2A  H 0 1 N N N 11.747 -0.810 61.260 2.606  1.544  0.195  H2A  JM6 20 
JM6 H3   H3   H 0 1 N N N 9.208  0.567  61.088 3.791  -0.400 1.176  H3   JM6 21 
JM6 H3A  H3A  H 0 1 N N N 10.725 0.992  61.967 3.802  -1.197 -0.416 H3A  JM6 22 
JM6 H4   H4   H 0 1 N N N 10.858 1.384  59.020 5.114  0.688  -1.351 H4   JM6 23 
JM6 H4A  H4A  H 0 1 N N N 9.684  2.426  59.840 5.103  1.485  0.241  H4A  JM6 24 
JM6 H6   H6   H 0 1 N N N 13.016 2.743  62.814 7.881  0.761  -1.370 H6   JM6 25 
JM6 H6A  H6A  H 0 1 N N N 11.284 2.304  62.995 7.871  1.558  0.222  H6A  JM6 26 
JM6 H6B  H6B  H 0 1 N N N 12.459 1.091  62.383 8.867  0.107  -0.040 H6B  JM6 27 
JM6 HA   HA   H 0 1 N N N 17.277 0.682  57.571 -4.761 0.770  -1.402 HA   JM6 28 
JM6 HB   HB   H 0 1 N N N 14.939 -1.024 58.547 -3.632 -0.454 1.155  HB   JM6 29 
JM6 HBA  HBA  H 0 1 N N N 16.011 0.015  59.573 -3.622 -1.251 -0.437 HBA  JM6 30 
JM6 HD   HD   H 0 1 N N N 13.770 -0.097 59.916 -1.124 -1.311 -0.391 HD   JM6 31 
JM6 HDA  HDA  H 0 1 N N N 13.160 1.618  59.815 -1.135 -0.514 1.201  HDA  JM6 32 
JM6 HNE  HNE  H 0 1 N N N 11.951 0.633  57.723 0.050  1.243  -0.666 HNE  JM6 33 
JM6 HG   HG   H 0 1 N N N 15.067 2.032  58.660 -2.309 0.634  -1.372 HG   JM6 34 
JM6 HGA  HGA  H 0 1 N N N 14.312 1.183  57.310 -2.319 1.431  0.220  HGA  JM6 35 
JM6 HOA1 HOA1 H 0 0 N N N 18.378 -2.477 59.017 -7.271 -1.704 -0.753 HOA1 JM6 36 
JM6 HNH1 HNH1 H 0 0 N N N 10.606 -2.361 59.111 2.286  -1.703 0.822  HNH1 JM6 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JM6 OA2 C    DOUB N N 1  
JM6 CA  C    SING N N 2  
JM6 C   OA1  SING N N 3  
JM6 N   CA   SING N N 4  
JM6 N   HN   SING N N 5  
JM6 N   HNA  SING N N 6  
JM6 NH1 C1   DOUB N N 7  
JM6 NE  C1   SING N N 8  
JM6 C1  C2   SING N N 9  
JM6 C2  C3   SING N N 10 
JM6 C2  H2   SING N N 11 
JM6 C2  H2A  SING N N 12 
JM6 C4  C3   SING N N 13 
JM6 C3  H3   SING N N 14 
JM6 C3  H3A  SING N N 15 
JM6 C4  S5   SING N N 16 
JM6 C4  H4   SING N N 17 
JM6 C4  H4A  SING N N 18 
JM6 S5  C6   SING N N 19 
JM6 C6  H6   SING N N 20 
JM6 C6  H6A  SING N N 21 
JM6 C6  H6B  SING N N 22 
JM6 CA  CB   SING N N 23 
JM6 CA  HA   SING N N 24 
JM6 CG  CB   SING N N 25 
JM6 CB  HB   SING N N 26 
JM6 CB  HBA  SING N N 27 
JM6 CG  CD   SING N N 28 
JM6 NE  CD   SING N N 29 
JM6 CD  HD   SING N N 30 
JM6 CD  HDA  SING N N 31 
JM6 NE  HNE  SING N N 32 
JM6 CG  HG   SING N N 33 
JM6 CG  HGA  SING N N 34 
JM6 OA1 HOA1 SING N N 35 
JM6 NH1 HNH1 SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JM6 SMILES           ACDLabs              11.02 "O=C(O)C(N)CCCNC(=[N@H])CCCSC"                                                                                
JM6 SMILES_CANONICAL CACTVS               3.352 "CSCCCC(=N)NCCC[C@H](N)C(O)=O"                                                                                
JM6 SMILES           CACTVS               3.352 "CSCCCC(=N)NCCC[CH](N)C(O)=O"                                                                                 
JM6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[H]/N=C(/CCCSC)\NCCC[C@@H](C(=O)O)N"                                                                         
JM6 SMILES           "OpenEye OEToolkits" 1.7.0 "CSCCCC(=N)NCCCC(C(=O)O)N"                                                                                    
JM6 InChI            InChI                1.03  "InChI=1S/C10H21N3O2S/c1-16-7-3-5-9(12)13-6-2-4-8(11)10(14)15/h8H,2-7,11H2,1H3,(H2,12,13)(H,14,15)/t8-/m0/s1" 
JM6 InChIKey         InChI                1.03  BHXCYHGJTSQWOB-QMMMGPOBSA-N                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JM6 "SYSTEMATIC NAME" ACDLabs              11.02 "N~5~-[(1Z)-4-(methylsulfanyl)butanimidoyl]-L-ornithine"            
JM6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-azanyl-5-(4-methylsulfanylbutanimidoylamino)pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JM6 "Create component"  2009-09-15 RCSB 
JM6 "Modify descriptor" 2011-06-04 RCSB 
# 
