data_EP6
# 
_chem_comp.id                                    EP6 
_chem_comp.name                                  "5'-[{cis-3-[2-(5-tert-butyl-1H-benzimidazol-2-yl)ethyl]cyclobutyl}(propan-2-yl)amino]-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H42 N8 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-11-08 
_chem_comp.pdbx_modified_date                    2013-07-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        562.706 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EP6 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4HRA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EP6 C2  C2  C 0 1 Y N N -17.380 -59.193 -16.286 8.929   1.987  -1.191 C2  EP6 1  
EP6 C4  C4  C 0 1 Y N N -18.320 -61.309 -16.317 6.860   1.469  -0.336 C4  EP6 2  
EP6 C5  C5  C 0 1 Y N N -17.080 -61.853 -16.578 6.820   2.723  0.297  C5  EP6 3  
EP6 C6  C6  C 0 1 Y N N -15.992 -61.007 -16.693 7.921   3.581  0.140  C6  EP6 4  
EP6 C8  C8  C 0 1 Y N N -18.507 -63.448 -16.477 4.973   1.695  0.784  C8  EP6 5  
EP6 NAV NAV N 0 1 Y N N -23.942 -62.163 -7.748  -6.360  -1.662 -0.999 NAV EP6 6  
EP6 CBB CBB C 0 1 Y N N -23.525 -63.103 -6.902  -7.314  -0.665 -0.940 CBB EP6 7  
EP6 CAK CAK C 0 1 Y N N -22.413 -63.206 -6.061  -8.343  -0.260 -1.779 CAK EP6 8  
EP6 CAI CAI C 0 1 Y N N -22.240 -64.343 -5.270  -9.140  0.805  -1.417 CAI EP6 9  
EP6 CAZ CAZ C 0 1 Y N N -23.179 -65.378 -5.313  -8.920  1.474  -0.221 CAZ EP6 10 
EP6 CBO CBO C 0 1 N N N -23.000 -66.633 -4.438  -9.803  2.635  0.157  CBO EP6 11 
EP6 CAD CAD C 0 1 N N N -21.761 -66.463 -3.554  -10.845 2.862  -0.940 CAD EP6 12 
EP6 CAE CAE C 0 1 N N N -24.233 -66.821 -3.548  -10.511 2.329  1.478  CAE EP6 13 
EP6 CAC CAC C 0 1 N N N -22.845 -67.865 -5.336  -8.948  3.894  0.316  CAC EP6 14 
EP6 CAM CAM C 0 1 Y N N -24.292 -65.264 -6.151  -7.913  1.089  0.618  CAM EP6 15 
EP6 CBC CBC C 0 1 Y N N -24.464 -64.130 -6.944  -7.092  0.013  0.271  CBC EP6 16 
EP6 NAW NAW N 0 1 Y N N -25.407 -63.769 -7.814  -6.037  -0.593 0.876  NAW EP6 17 
EP6 CBA CBA C 0 1 Y N N -25.090 -62.569 -8.290  -5.614  -1.575 0.135  CBA EP6 18 
EP6 CAN CAN C 0 1 N N N -25.896 -61.805 -9.321  -4.458  -2.479 0.479  CAN EP6 19 
EP6 CAO CAO C 0 1 N N N -25.164 -61.905 -10.658 -3.212  -1.634 0.748  CAO EP6 20 
EP6 CBG CBG C 0 1 N N N -25.506 -63.192 -11.413 -2.039  -2.552 1.097  CBG EP6 21 
EP6 CAQ CAQ C 0 1 N N N -24.515 -64.310 -11.084 -0.764  -1.795 1.506  CAQ EP6 22 
EP6 CAP CAP C 0 1 N N N -24.891 -63.122 -12.809 -1.257  -3.046 -0.131 CAP EP6 23 
EP6 CBH CBH C 0 1 N N N -24.308 -64.523 -12.592 0.022   -2.841 0.698  CBH EP6 24 
EP6 NBM NBM N 0 1 N N N -22.867 -64.538 -12.953 1.138   -2.274 -0.071 NBM EP6 25 
EP6 CBF CBF C 0 1 N N N -22.048 -65.451 -12.109 0.840   -0.899 -0.495 CBF EP6 26 
EP6 CAB CAB C 0 1 N N N -22.189 -66.931 -12.511 1.364   0.083  0.554  CAB EP6 27 
EP6 CAA CAA C 0 1 N N N -20.580 -64.986 -12.106 1.518   -0.622 -1.838 CAA EP6 28 
EP6 CAR CAR C 0 1 N N N -22.648 -64.691 -14.411 2.388   -2.328 0.698  CAR EP6 29 
EP6 CBK CBK C 0 1 N N R -22.340 -63.315 -15.020 3.572   -2.060 -0.235 CBK EP6 30 
EP6 OAX OAX O 0 1 N N N -20.925 -63.128 -14.950 3.836   -0.649 -0.296 OAX EP6 31 
EP6 CBI CBI C 0 1 N N S -22.711 -63.250 -16.509 4.839   -2.740 0.319  CBI EP6 32 
EP6 OAG OAG O 0 1 N N N -23.741 -62.278 -16.695 5.345   -3.694 -0.616 OAG EP6 33 
EP6 CBJ CBJ C 0 1 N N R -21.442 -62.750 -17.182 5.843   -1.575 0.507  CBJ EP6 34 
EP6 OAH OAH O 0 1 N N N -21.757 -61.690 -18.098 7.155   -1.963 0.096  OAH EP6 35 
EP6 CBL CBL C 0 1 N N R -20.634 -62.211 -16.004 5.264   -0.493 -0.440 CBL EP6 36 
EP6 N9  N9  N 0 1 Y N N -19.181 -62.315 -16.263 5.682   0.844  -0.011 N9  EP6 37 
EP6 N7  N7  N 0 1 Y N N -17.223 -63.166 -16.669 5.642   2.797  0.963  N7  EP6 38 
EP6 N3  N3  N 0 1 Y N N -18.442 -59.980 -16.178 7.924   1.147  -1.063 N3  EP6 39 
EP6 N1  N1  N 0 1 Y N N -16.175 -59.685 -16.541 8.939   3.173  -0.611 N1  EP6 40 
EP6 N6  N6  N 0 1 N N N -14.785 -61.507 -16.939 7.939   4.828  0.739  N6  EP6 41 
EP6 H1  H1  H 0 1 N N N -17.499 -58.127 -16.163 9.779   1.694  -1.788 H1  EP6 42 
EP6 H2  H2  H 0 1 N N N -18.938 -64.438 -16.492 4.000   1.486  1.202  H2  EP6 43 
EP6 H3  H3  H 0 1 N N N -23.474 -61.301 -7.943  -6.247  -2.307 -1.714 H3  EP6 44 
EP6 H4  H4  H 0 1 N N N -21.688 -62.406 -6.023  -8.518  -0.776 -2.711 H4  EP6 45 
EP6 H5  H5  H 0 1 N N N -21.379 -64.423 -4.623  -9.941  1.121  -2.069 H5  EP6 46 
EP6 H6  H6  H 0 1 N N N -21.885 -65.576 -2.915  -11.454 1.965  -1.054 H6  EP6 47 
EP6 H7  H7  H 0 1 N N N -21.636 -67.355 -2.923  -11.483 3.702  -0.667 H7  EP6 48 
EP6 H8  H8  H 0 1 N N N -20.872 -66.336 -4.189  -10.340 3.080  -1.881 H8  EP6 49 
EP6 H9  H9  H 0 1 N N N -24.354 -65.942 -2.898  -9.769  2.168  2.260  H9  EP6 50 
EP6 H10 H10 H 0 1 N N N -25.126 -66.937 -4.179  -11.149 3.169  1.751  H10 EP6 51 
EP6 H11 H11 H 0 1 N N N -24.104 -67.720 -2.928  -11.120 1.432  1.364  H11 EP6 52 
EP6 H12 H12 H 0 1 N N N -22.717 -68.761 -4.711  -8.443  4.112  -0.625 H12 EP6 53 
EP6 H13 H13 H 0 1 N N N -23.743 -67.979 -5.961  -9.586  4.734  0.590  H13 EP6 54 
EP6 H14 H14 H 0 1 N N N -21.963 -67.739 -5.981  -8.205  3.733  1.098  H14 EP6 55 
EP6 H15 H15 H 0 1 N N N -25.023 -66.059 -6.184  -7.751  1.616  1.546  H15 EP6 56 
EP6 H17 H17 H 0 1 N N N -25.983 -60.750 -9.021  -4.703  -3.060 1.368  H17 EP6 57 
EP6 H18 H18 H 0 1 N N N -26.900 -62.245 -9.411  -4.265  -3.155 -0.355 H18 EP6 58 
EP6 H19 H19 H 0 1 N N N -24.080 -61.882 -10.471 -2.967  -1.054 -0.141 H19 EP6 59 
EP6 H20 H20 H 0 1 N N N -25.446 -61.044 -11.281 -3.404  -0.958 1.582  H20 EP6 60 
EP6 H21 H21 H 0 1 N N N -26.566 -63.483 -11.383 -2.315  -3.348 1.790  H21 EP6 61 
EP6 H22 H22 H 0 1 N N N -24.958 -65.170 -10.561 -0.703  -0.788 1.093  H22 EP6 62 
EP6 H23 H23 H 0 1 N N N -23.616 -63.976 -10.545 -0.562  -1.826 2.577  H23 EP6 63 
EP6 H24 H24 H 0 1 N N N -24.136 -62.331 -12.933 -1.451  -4.089 -0.382 H24 EP6 64 
EP6 H25 H25 H 0 1 N N N -25.626 -63.058 -13.625 -1.330  -2.382 -0.992 H25 EP6 65 
EP6 H26 H26 H 0 1 N N N -24.909 -65.338 -13.022 0.310   -3.716 1.281  H26 EP6 66 
EP6 H28 H28 H 0 1 N N N -22.414 -65.364 -11.075 -0.238  -0.777 -0.600 H28 EP6 67 
EP6 H29 H29 H 0 1 N N N -21.563 -67.551 -11.853 2.434   0.234  0.408  H29 EP6 68 
EP6 H30 H30 H 0 1 N N N -23.240 -67.239 -12.413 0.846   1.036  0.450  H30 EP6 69 
EP6 H31 H31 H 0 1 N N N -21.865 -67.060 -13.554 1.187   -0.320 1.551  H31 EP6 70 
EP6 H32 H32 H 0 1 N N N -19.981 -65.665 -11.481 1.044   -1.222 -2.615 H32 EP6 71 
EP6 H33 H33 H 0 1 N N N -20.190 -64.996 -13.135 1.417   0.435  -2.085 H33 EP6 72 
EP6 H34 H34 H 0 1 N N N -20.520 -63.965 -11.701 2.574   -0.881 -1.772 H34 EP6 73 
EP6 H35 H35 H 0 1 N N N -23.553 -65.106 -14.878 2.366   -1.572 1.482  H35 EP6 74 
EP6 H36 H36 H 0 1 N N N -21.800 -65.370 -14.587 2.496   -3.315 1.147  H36 EP6 75 
EP6 H37 H37 H 0 1 N N N -22.877 -62.531 -14.466 3.351   -2.440 -1.232 H37 EP6 76 
EP6 H38 H38 H 0 1 N N N -22.995 -64.243 -16.887 4.628   -3.219 1.276  H38 EP6 77 
EP6 H39 H39 H 0 1 N N N -24.540 -62.579 -16.279 6.143   -4.152 -0.319 H39 EP6 78 
EP6 H40 H40 H 0 1 N N N -20.909 -63.577 -17.674 5.846   -1.227 1.540  H40 EP6 79 
EP6 H41 H41 H 0 1 N N N -20.960 -61.383 -18.514 7.524   -2.700 0.602  H41 EP6 80 
EP6 H42 H42 H 0 1 N N N -20.931 -61.180 -15.761 5.569   -0.680 -1.469 H42 EP6 81 
EP6 H43 H43 H 0 1 N N N -14.118 -60.763 -16.981 7.185   5.120  1.275  H43 EP6 82 
EP6 H44 H44 H 0 1 N N N -14.532 -62.141 -16.208 8.705   5.412  0.623  H44 EP6 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EP6 OAH CBJ SING N N 1  
EP6 CBJ CBI SING N N 2  
EP6 CBJ CBL SING N N 3  
EP6 N6  C6  SING N N 4  
EP6 OAG CBI SING N N 5  
EP6 C6  C5  DOUB Y N 6  
EP6 C6  N1  SING Y N 7  
EP6 N7  C5  SING Y N 8  
EP6 N7  C8  DOUB Y N 9  
EP6 C5  C4  SING Y N 10 
EP6 N1  C2  DOUB Y N 11 
EP6 CBI CBK SING N N 12 
EP6 C8  N9  SING Y N 13 
EP6 C4  N9  SING Y N 14 
EP6 C4  N3  DOUB Y N 15 
EP6 C2  N3  SING Y N 16 
EP6 N9  CBL SING N N 17 
EP6 CBL OAX SING N N 18 
EP6 CBK OAX SING N N 19 
EP6 CBK CAR SING N N 20 
EP6 CAR NBM SING N N 21 
EP6 NBM CBH SING N N 22 
EP6 NBM CBF SING N N 23 
EP6 CAP CBH SING N N 24 
EP6 CAP CBG SING N N 25 
EP6 CBH CAQ SING N N 26 
EP6 CAB CBF SING N N 27 
EP6 CBF CAA SING N N 28 
EP6 CBG CAQ SING N N 29 
EP6 CBG CAO SING N N 30 
EP6 CAO CAN SING N N 31 
EP6 CAN CBA SING N N 32 
EP6 CBA NAW DOUB Y N 33 
EP6 CBA NAV SING Y N 34 
EP6 NAW CBC SING Y N 35 
EP6 NAV CBB SING Y N 36 
EP6 CBC CBB DOUB Y N 37 
EP6 CBC CAM SING Y N 38 
EP6 CBB CAK SING Y N 39 
EP6 CAM CAZ DOUB Y N 40 
EP6 CAK CAI DOUB Y N 41 
EP6 CAC CBO SING N N 42 
EP6 CAZ CAI SING Y N 43 
EP6 CAZ CBO SING N N 44 
EP6 CBO CAD SING N N 45 
EP6 CBO CAE SING N N 46 
EP6 C2  H1  SING N N 47 
EP6 C8  H2  SING N N 48 
EP6 NAV H3  SING N N 49 
EP6 CAK H4  SING N N 50 
EP6 CAI H5  SING N N 51 
EP6 CAD H6  SING N N 52 
EP6 CAD H7  SING N N 53 
EP6 CAD H8  SING N N 54 
EP6 CAE H9  SING N N 55 
EP6 CAE H10 SING N N 56 
EP6 CAE H11 SING N N 57 
EP6 CAC H12 SING N N 58 
EP6 CAC H13 SING N N 59 
EP6 CAC H14 SING N N 60 
EP6 CAM H15 SING N N 61 
EP6 CAN H17 SING N N 62 
EP6 CAN H18 SING N N 63 
EP6 CAO H19 SING N N 64 
EP6 CAO H20 SING N N 65 
EP6 CBG H21 SING N N 66 
EP6 CAQ H22 SING N N 67 
EP6 CAQ H23 SING N N 68 
EP6 CAP H24 SING N N 69 
EP6 CAP H25 SING N N 70 
EP6 CBH H26 SING N N 71 
EP6 CBF H28 SING N N 72 
EP6 CAB H29 SING N N 73 
EP6 CAB H30 SING N N 74 
EP6 CAB H31 SING N N 75 
EP6 CAA H32 SING N N 76 
EP6 CAA H33 SING N N 77 
EP6 CAA H34 SING N N 78 
EP6 CAR H35 SING N N 79 
EP6 CAR H36 SING N N 80 
EP6 CBK H37 SING N N 81 
EP6 CBI H38 SING N N 82 
EP6 OAG H39 SING N N 83 
EP6 CBJ H40 SING N N 84 
EP6 OAH H41 SING N N 85 
EP6 CBL H42 SING N N 86 
EP6 N6  H43 SING N N 87 
EP6 N6  H44 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EP6 SMILES           ACDLabs              12.01 "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CN(C(C)C)C6CC(CCc5nc4cc(ccc4n5)C(C)(C)C)C6)N" 
EP6 InChI            InChI                1.03  
;InChI=1S/C30H42N8O3/c1-16(2)37(13-22-25(39)26(40)29(41-22)38-15-34-24-27(31)32-14-33-28(24)38)19-10-17(11-19)6-9-23-35-20-8-7-18(30(3,4)5)12-21(20)36-23/h7-8,12,14-17,19,22,25-26,29,39-40H,6,9-11,13H2,1-5H3,(H,35,36)(H2,31,32,33)/t17-,19+,22-,25-,26-,29-/m1/s1
;
EP6 InChIKey         InChI                1.03  LXFOLMYKSYSZQS-LURJZOHASA-N 
EP6 SMILES_CANONICAL CACTVS               3.370 "CC(C)N(C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)[C@H]4C[C@@H](CCc5[nH]c6ccc(cc6n5)C(C)(C)C)C4" 
EP6 SMILES           CACTVS               3.370 "CC(C)N(C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)[CH]4C[CH](CCc5[nH]c6ccc(cc6n5)C(C)(C)C)C4" 
EP6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)N(C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)C4CC(C4)CCc5[nH]c6ccc(cc6n5)C(C)(C)C" 
EP6 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)N(CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)C4CC(C4)CCc5[nH]c6ccc(cc6n5)C(C)(C)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
EP6 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-[{cis-3-[2-(5-tert-butyl-1H-benzimidazol-2-yl)ethyl]cyclobutyl}(propan-2-yl)amino]-5'-deoxyadenosine"                                      
EP6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4S,5R)-2-(6-aminopurin-9-yl)-5-[[[3-[2-(5-tert-butyl-1H-benzimidazol-2-yl)ethyl]cyclobutyl]-propan-2-yl-amino]methyl]oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EP6 "Create component" 2012-11-08 RCSB 
EP6 "Initial release"  2013-07-31 RCSB 
# 
