data_EO6
# 
_chem_comp.id                                    EO6 
_chem_comp.name                                  "(1R,2S)-2-[(N-{[(7-cyano-7-azaspiro[3.5]nonan-2-yl)oxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H37 N5 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-12-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        543.634 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ? 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7T4A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EO6 C02 C1  C 0 1 N N N N N N 5.318  29.867 21.841 -10.189 0.984  -0.007 C02 EO6 1  
EO6 C04 C2  C 0 1 N N N N N N 7.336  29.614 23.718 -8.352  0.356  -1.506 C04 EO6 2  
EO6 C05 C3  C 0 1 N N N N N N 8.884  29.317 23.809 -7.360  -0.763 -1.172 C05 EO6 3  
EO6 C06 C4  C 0 1 N N N N N N 9.148  27.821 23.624 -6.304  -0.225 -0.208 C06 EO6 4  
EO6 C07 C5  C 0 1 N N N N N N 9.052  27.008 24.997 -5.291  0.716  -0.874 C07 EO6 5  
EO6 C12 C6  C 0 1 N N S N N N 12.537 22.074 26.577 0.582   -0.414 0.194  C12 EO6 6  
EO6 C13 C7  C 0 1 N N N N N N 13.782 21.799 27.558 0.803   -1.801 0.801  C13 EO6 7  
EO6 C14 C8  C 0 1 N N N N N N 15.138 22.368 26.955 -0.318  -2.107 1.796  C14 EO6 8  
EO6 C16 C9  C 0 1 N N N N N N 15.355 22.001 25.442 -0.167  -3.540 2.310  C16 EO6 9  
EO6 C17 C10 C 0 1 N N N N N N 11.148 21.602 27.226 1.749   -0.062 -0.692 C17 EO6 10 
EO6 C19 C11 C 0 1 N N S N N N 9.194  19.870 27.211 4.126   0.346  -1.037 C19 EO6 11 
EO6 C20 C12 C 0 1 N N N N N N 8.142  19.837 26.075 5.178   1.099  -0.220 C20 EO6 12 
EO6 C21 C13 C 0 1 N N S N N N 8.073  21.212 25.299 4.591   2.425  0.269  C21 EO6 13 
EO6 C22 C14 C 0 1 N N N N N N 6.953  21.078 24.225 5.612   3.188  1.084  C22 EO6 14 
EO6 O26 O1  O 0 1 N N N N N N 7.070  20.379 23.229 6.317   2.704  1.944  O26 EO6 15 
EO6 SG  S1  S 0 1 N Y N N N N 10.493 17.503 26.639 5.179   -2.049 -0.240 SG  EO6 16 
EO6 C10 C15 C 0 1 N N N N N N 11.454 24.140 25.402 -1.838  -0.205 0.000  C10 EO6 17 
EO6 O09 O2  O 0 1 N N N N N N 11.256 25.590 25.401 -2.970  -0.209 -0.729 O09 EO6 18 
EO6 C24 C16 C 0 1 N N N N N N 6.161  22.593 25.916 4.646   4.742  -0.347 C24 EO6 19 
EO6 C08 C17 C 0 1 N N N N N N 10.289 26.132 24.445 -4.213  0.029  -0.018 C08 EO6 20 
EO6 C15 C18 C 0 1 N N N N N N 16.352 21.918 27.863 -0.235  -1.133 2.973  C15 EO6 21 
EO6 C25 C19 C 0 1 N N N N N N 7.640  22.194 26.347 4.287   3.356  -0.927 C25 EO6 22 
EO6 C27 C20 C 0 1 N N R N N N 9.420  18.394 27.784 4.741   -0.935 -1.603 C27 EO6 23 
EO6 C31 C21 C 0 1 N N N N N N 10.671 27.470 23.691 -5.141  -1.197 0.029  C31 EO6 24 
EO6 C32 C22 C 0 1 N N N N N N 8.554  27.353 22.289 -6.901  0.336  1.081  C32 EO6 25 
EO6 C33 C23 C 0 1 N N N N N N 7.149  27.982 21.774 -7.897  1.448  0.732  C33 EO6 26 
EO6 N01 N1  N 0 1 N N N N N N 4.215  30.233 21.568 -11.305 1.029  0.199  N01 EO6 27 
EO6 N03 N2  N 0 1 N N N N N N 6.657  29.395 22.299 -8.857  0.931  -0.252 N03 EO6 28 
EO6 N11 N3  N 0 1 N N N N N N 12.414 23.567 26.347 -0.650  -0.419 -0.599 N11 EO6 29 
EO6 N18 N4  N 0 1 N N N N N N 10.504 20.387 26.686 2.992   0.004  -0.175 N18 EO6 30 
EO6 N23 N5  N 0 1 N N N N N N 5.856  21.896 24.555 5.626   4.481  0.715  N23 EO6 31 
EO6 O28 O3  O 0 1 N N N N N N 10.098 18.502 29.030 3.797   -1.579 -2.460 O28 EO6 32 
EO6 O29 O4  O 0 1 N N N N N N 10.623 22.244 28.124 1.569   0.163  -1.870 O29 EO6 33 
EO6 O30 O5  O 0 1 N N N N N N 10.825 23.404 24.647 -1.888  -0.007 1.198  O30 EO6 34 
EO6 O1  O6  O 0 1 N Y N N N N 10.351 15.884 27.425 5.774   -3.271 -0.925 O1  EO6 35 
EO6 H1  H1  H 0 1 N N N N N N 7.179  30.664 24.005 -7.849  1.130  -2.086 H1  EO6 36 
EO6 H2  H2  H 0 1 N N N N N N 6.826  28.957 24.438 -9.182  -0.051 -2.084 H2  EO6 37 
EO6 H3  H3  H 0 1 N N N N N N 9.257  29.632 24.795 -7.891  -1.593 -0.704 H3  EO6 38 
EO6 H4  H4  H 0 1 N N N N N N 9.408  29.878 23.022 -6.878  -1.108 -2.087 H4  EO6 39 
EO6 H5  H5  H 0 1 N N N N N N 9.268  27.597 25.900 -5.173  0.545  -1.944 H5  EO6 40 
EO6 H6  H6  H 0 1 N N N N N N 8.116  26.449 25.140 -5.443  1.766  -0.627 H6  EO6 41 
EO6 H7  H7  H 0 1 N N N N N N 12.696 21.546 25.625 0.497   0.323  0.993  H7  EO6 42 
EO6 H8  H8  H 0 1 N N N N N N 13.589 22.286 28.525 0.800   -2.549 0.009  H8  EO6 43 
EO6 H9  H9  H 0 1 N N N N N N 13.885 20.714 27.708 1.763   -1.823 1.317  H9  EO6 44 
EO6 H10 H10 H 0 1 N N N N N N 15.080 23.465 27.017 -1.283  -1.998 1.301  H10 EO6 45 
EO6 H11 H11 H 0 1 N N N N N N 16.308 22.426 25.094 0.798   -3.649 2.805  H11 EO6 46 
EO6 H12 H12 H 0 1 N N N N N N 15.378 20.907 25.330 -0.966  -3.758 3.019  H12 EO6 47 
EO6 H13 H13 H 0 1 N N N N N N 14.530 22.413 24.843 -0.226  -4.235 1.472  H13 EO6 48 
EO6 H14 H14 H 0 1 N N N N N N 8.833  20.515 28.026 3.782   0.978  -1.856 H14 EO6 49 
EO6 H15 H15 H 0 1 N N N N N N 7.155  19.624 26.510 5.473   0.495  0.638  H15 EO6 50 
EO6 H16 H16 H 0 1 N N N N N N 8.409  19.040 25.365 6.050   1.296  -0.843 H16 EO6 51 
EO6 H17 H17 H 0 1 N N N N N N 9.043  21.470 24.849 3.688   2.249  0.854  H17 EO6 52 
EO6 H18 H18 H 0 1 N N N N N N 6.086  23.685 25.802 5.086   5.373  -1.119 H18 EO6 53 
EO6 H19 H19 H 0 1 N N N N N N 9.931  25.373 23.733 -4.061  0.500  0.954  H19 EO6 54 
EO6 H20 H20 H 0 1 N N N N N N 16.152 22.197 28.908 0.729   -1.241 3.468  H20 EO6 55 
EO6 H21 H21 H 0 1 N N N N N N 16.478 20.828 27.792 -0.343  -0.111 2.607  H21 EO6 56 
EO6 H22 H22 H 0 1 N N N N N N 17.271 22.417 27.520 -1.034  -1.350 3.682  H22 EO6 57 
EO6 H23 H23 H 0 1 N N N N N N 7.644  21.729 27.344 4.922   3.115  -1.780 H23 EO6 58 
EO6 H24 H24 H 0 1 N N N N N N 8.465  17.853 27.852 5.638   -0.687 -2.172 H24 EO6 59 
EO6 H25 H25 H 0 1 N N N N N N 11.146 27.319 22.711 -5.172  -1.686 1.003  H25 EO6 60 
EO6 H26 H26 H 0 1 N N N N N N 11.273 28.171 24.287 -4.982  -1.897 -0.792 H26 EO6 61 
EO6 H27 H27 H 0 1 N N N N N N 8.408  26.266 22.368 -7.417  -0.459 1.619  H27 EO6 62 
EO6 H28 H28 H 0 1 N N N N N N 9.304  27.567 21.513 -6.105  0.741  1.705  H28 EO6 63 
EO6 H29 H29 H 0 1 N N N N N N 7.222  28.061 20.679 -8.427  1.760  1.631  H29 EO6 64 
EO6 H30 H30 H 0 1 N N N N N N 6.364  27.258 22.038 -7.361  2.298  0.308  H30 EO6 65 
EO6 H31 H31 H 0 1 N N N N N N 13.011 24.184 26.860 -0.610  -0.577 -1.555 H31 EO6 66 
EO6 H32 H32 H 0 1 N N N N N N 10.956 19.891 25.945 3.135   -0.176 0.767  H32 EO6 67 
EO6 H33 H33 H 0 1 N N N N N N 5.025  22.010 24.011 6.208   5.154  1.100  H33 EO6 68 
EO6 H34 H34 H 0 1 N N N N N N 9.550  18.969 29.650 2.973   -1.828 -2.020 H34 EO6 69 
EO6 H35 H35 H 0 1 N Y N N N N 10.871 15.251 26.944 6.058   -3.965 -0.315 H35 EO6 70 
EO6 O3  O7  O 0 1 N Y N N N N ?      ?      ?      6.256   -1.513 0.516  O3  EO6 71 
EO6 O2  O8  O 0 1 N Y N N N N ?      ?      ?      4.008   -2.540 0.398  O2  EO6 72 
EO6 H36 H36 H 0 1 N N N N N N 5.445  22.254 26.679 3.758   5.219  0.068  H36 EO6 73 
EO6 H37 H37 H 0 1 N N N N N N 8.297  23.076 26.351 3.234   3.309  -1.201 H37 EO6 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EO6 N01 C02 TRIP N N 1  
EO6 C33 C32 SING N N 2  
EO6 C33 N03 SING N N 3  
EO6 C02 N03 SING N N 4  
EO6 C32 C06 SING N N 5  
EO6 N03 C04 SING N N 6  
EO6 O26 C22 DOUB N N 7  
EO6 C06 C31 SING N N 8  
EO6 C06 C05 SING N N 9  
EO6 C06 C07 SING N N 10 
EO6 C31 C08 SING N N 11 
EO6 C04 C05 SING N N 12 
EO6 C22 N23 SING N N 13 
EO6 C22 C21 SING N N 14 
EO6 C08 C07 SING N N 15 
EO6 C08 O09 SING N N 16 
EO6 N23 C24 SING N N 17 
EO6 O30 C10 DOUB N N 18 
EO6 C21 C20 SING N N 19 
EO6 C21 C25 SING N N 20 
EO6 O09 C10 SING N N 21 
EO6 C10 N11 SING N N 22 
EO6 C16 C14 SING N N 23 
EO6 C24 C25 SING N N 24 
EO6 C20 C19 SING N N 25 
EO6 N11 C12 SING N N 26 
EO6 C12 C17 SING N N 27 
EO6 C12 C13 SING N N 28 
EO6 SG  C27 SING N N 29 
EO6 N18 C19 SING N N 30 
EO6 N18 C17 SING N N 31 
EO6 C14 C13 SING N N 32 
EO6 C14 C15 SING N N 33 
EO6 C19 C27 SING N N 34 
EO6 C17 O29 DOUB N N 35 
EO6 C27 O28 SING N N 36 
EO6 SG  O1  SING N N 37 
EO6 C04 H1  SING N N 38 
EO6 C04 H2  SING N N 39 
EO6 C05 H3  SING N N 40 
EO6 C05 H4  SING N N 41 
EO6 C07 H5  SING N N 42 
EO6 C07 H6  SING N N 43 
EO6 C12 H7  SING N N 44 
EO6 C13 H8  SING N N 45 
EO6 C13 H9  SING N N 46 
EO6 C14 H10 SING N N 47 
EO6 C16 H11 SING N N 48 
EO6 C16 H12 SING N N 49 
EO6 C16 H13 SING N N 50 
EO6 C19 H14 SING N N 51 
EO6 C20 H15 SING N N 52 
EO6 C20 H16 SING N N 53 
EO6 C21 H17 SING N N 54 
EO6 C24 H18 SING N N 55 
EO6 C08 H19 SING N N 56 
EO6 C15 H20 SING N N 57 
EO6 C15 H21 SING N N 58 
EO6 C15 H22 SING N N 59 
EO6 C25 H23 SING N N 60 
EO6 C27 H24 SING N N 61 
EO6 C31 H25 SING N N 62 
EO6 C31 H26 SING N N 63 
EO6 C32 H27 SING N N 64 
EO6 C32 H28 SING N N 65 
EO6 C33 H29 SING N N 66 
EO6 C33 H30 SING N N 67 
EO6 N11 H31 SING N N 68 
EO6 N18 H32 SING N N 69 
EO6 N23 H33 SING N N 70 
EO6 O28 H34 SING N N 71 
EO6 O1  H35 SING N N 72 
EO6 SG  O3  DOUB N N 73 
EO6 SG  O2  DOUB N N 74 
EO6 C24 H36 SING N N 75 
EO6 C25 H37 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EO6 SMILES           ACDLabs              12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OC1CC2(CCN(CC2)C#N)C1)C(O)S(=O)(=O)O"                                                                                                                                                          
EO6 InChI            InChI                1.03  "InChI=1S/C23H37N5O8S/c1-14(2)9-17(27-22(32)36-16-11-23(12-16)4-7-28(13-24)8-5-23)20(30)26-18(21(31)37(33,34)35)10-15-3-6-25-19(15)29/h14-18,21,31H,3-12H2,1-2H3,(H,25,29)(H,26,30)(H,27,32)(H,33,34,35)/t15-,17-,18-,21+/m0/s1" 
EO6 InChIKey         InChI                1.03  CSWBWWIUTWLAOZ-QUJKESNLSA-N                                                                                                                                                                                                      
EO6 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OC1CC2(CCN(CC2)C#N)C1)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O"                                                                                                                                      
EO6 SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OC1CC2(CCN(CC2)C#N)C1)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"                                                                                                                                            
EO6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OC2CC3(C2)CCN(CC3)C#N"                                                                                                                                       
EO6 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CC3(C2)CCN(CC3)C#N"                                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
EO6 "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S)-2-[(N-{[(7-cyano-7-azaspiro[3.5]nonan-2-yl)oxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                                          
EO6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[(2~{S})-2-[(7-cyano-7-azaspiro[3.5]nonan-2-yl)oxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EO6 "Create component"   2021-12-10 RCSB 
EO6 "Modify coordinates" 2021-12-13 RCSB 
EO6 "Initial release"    2021-12-22 RCSB 
EO6 "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            EO6 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C27 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
