data_D06
# 
_chem_comp.id                                    D06 
_chem_comp.name                                  "(2S)-2-amino-1-(1,3-dihydro-2H-isoindol-2-yl)-2-[(1r,4S)-4-(pyrrolidin-1-yl)cyclohexyl]ethan-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H29 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-11-23 
_chem_comp.pdbx_modified_date                    2022-09-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        327.464 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D06 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7SVM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D06 C2  C1  C 0 1 N N S -43.666 15.575 15.035 0.460  -1.910 -0.811 C2  D06 1  
D06 C4  C2  C 0 1 N N N -44.043 17.059 14.855 -0.587 -0.818 -0.582 C4  D06 2  
D06 C6  C3  C 0 1 N N N -43.162 18.035 15.646 -1.245 -1.021 0.784  C6  D06 3  
D06 C7  C4  C 0 1 N N N -43.603 19.468 15.338 -2.292 0.071  1.013  C7  D06 4  
D06 C8  C5  C 0 1 N N N -45.084 19.734 15.671 -3.357 -0.007 -0.083 C8  D06 5  
D06 C11 C6  C 0 1 N N N -45.470 17.243 15.369 -1.652 -0.896 -1.678 C11 D06 6  
D06 C15 C7  C 0 1 N N N -47.072 22.929 15.313 -6.734 1.409  -0.233 C15 D06 7  
D06 C16 C8  C 0 1 N N N -46.900 21.404 15.411 -5.411 0.998  -0.905 C16 D06 8  
D06 C17 C9  C 0 1 N N N -44.360 14.717 14.005 1.510  -1.834 0.268  C17 D06 9  
D06 C21 C10 C 0 1 Y N N -46.473 12.158 15.583 3.911  0.879  -0.546 C21 D06 10 
D06 C23 C11 C 0 1 Y N N -48.181 10.600 16.204 5.663  2.507  -0.692 C23 D06 11 
D06 C24 C12 C 0 1 Y N N -48.448 10.368 14.862 6.198  2.037  0.493  C24 D06 12 
D06 C27 C13 C 0 1 N N N -45.778 12.763 13.441 3.584  -0.719 1.148  C27 D06 13 
D06 N1  N1  N 0 1 N N N -42.246 15.292 14.856 -0.189 -3.227 -0.771 N1  D06 14 
D06 C10 C14 C 0 1 N N N -45.943 18.645 15.008 -2.699 0.196  -1.449 C10 D06 15 
D06 N12 N2  N 0 1 N N N -45.472 21.086 15.193 -4.362 1.042  0.137  N12 D06 16 
D06 C13 C15 C 0 1 N N N -44.806 22.181 15.925 -5.067 0.841  1.429  C13 D06 17 
D06 C14 C16 C 0 1 N N N -45.642 23.450 15.584 -6.374 1.654  1.250  C14 D06 18 
D06 O18 O1  O 0 1 N N N -44.216 14.958 12.817 1.467  -2.597 1.210  O18 D06 19 
D06 N19 N3  N 0 1 N N N -45.093 13.657 14.365 2.495  -0.919 0.186  N19 D06 20 
D06 C20 C17 C 0 1 N N N -45.378 13.156 15.708 2.678  0.075  -0.877 C20 D06 21 
D06 C22 C18 C 0 1 Y N N -47.190 11.500 16.561 4.521  1.928  -1.211 C22 D06 22 
D06 C25 C19 C 0 1 Y N N -47.725 11.029 13.872 5.582  0.997  1.164  C25 D06 23 
D06 C26 C20 C 0 1 Y N N -46.736 11.937 14.241 4.441  0.413  0.641  C26 D06 24 
D06 H1  H1  H 0 1 N N N -43.982 15.254 16.038 0.929  -1.766 -1.785 H1  D06 25 
D06 H2  H2  H 0 1 N N N -44.003 17.316 13.786 -0.105 0.159  -0.612 H2  D06 26 
D06 H3  H3  H 0 1 N N N -43.270 17.839 16.723 -1.726 -1.998 0.814  H3  D06 27 
D06 H4  H4  H 0 1 N N N -42.110 17.902 15.353 -0.486 -0.966 1.564  H4  D06 28 
D06 H5  H5  H 0 1 N N N -42.983 20.159 15.928 -2.760 -0.074 1.986  H5  D06 29 
D06 H6  H6  H 0 1 N N N -43.446 19.659 14.266 -1.810 1.048  0.983  H6  D06 30 
D06 H7  H7  H 0 1 N N N -45.218 19.677 16.761 -3.839 -0.984 -0.053 H7  D06 31 
D06 H8  H8  H 0 1 N N N -46.131 16.498 14.902 -1.183 -0.751 -2.651 H8  D06 32 
D06 H9  H9  H 0 1 N N N -45.489 17.116 16.461 -2.134 -1.873 -1.648 H9  D06 33 
D06 H10 H10 H 0 1 N N N -47.419 23.226 14.312 -7.120 2.322  -0.685 H10 D06 34 
D06 H11 H11 H 0 1 N N N -47.779 23.298 16.071 -7.466 0.605  -0.316 H11 D06 35 
D06 H12 H12 H 0 1 N N N -47.513 20.910 14.643 -5.495 -0.013 -1.304 H12 D06 36 
D06 H13 H13 H 0 1 N N N -47.211 21.057 16.408 -5.170 1.695  -1.708 H13 D06 37 
D06 H14 H14 H 0 1 N N N -48.743 10.081 16.967 6.138  3.326  -1.211 H14 D06 38 
D06 H15 H15 H 0 1 N N N -49.223 9.669  14.583 7.091  2.488  0.899  H15 D06 39 
D06 H16 H16 H 0 1 N N N -45.048 12.111 12.939 3.172  -0.462 2.124  H16 D06 40 
D06 H17 H17 H 0 1 N N N -46.325 13.349 12.688 4.180  -1.628 1.226  H17 D06 41 
D06 H18 H18 H 0 1 N N N -41.714 15.829 15.510 0.470  -3.962 -0.983 H18 D06 42 
D06 H19 H19 H 0 1 N N N -42.078 14.318 15.010 -0.631 -3.385 0.122  H19 D06 43 
D06 H21 H21 H 0 1 N N N -45.890 18.767 13.916 -3.458 0.141  -2.229 H21 D06 44 
D06 H22 H22 H 0 1 N N N -46.985 18.764 15.340 -2.217 1.174  -1.479 H22 D06 45 
D06 H24 H24 H 0 1 N N N -44.818 21.988 17.008 -5.290 -0.215 1.586  H24 D06 46 
D06 H25 H25 H 0 1 N N N -43.766 22.299 15.585 -4.476 1.235  2.256  H25 D06 47 
D06 H26 H26 H 0 1 N N N -45.238 23.951 14.692 -6.196 2.714  1.434  H26 D06 48 
D06 H27 H27 H 0 1 N N N -45.641 24.152 16.431 -7.157 1.274  1.906  H27 D06 49 
D06 H28 H28 H 0 1 N N N -44.481 12.680 16.131 1.810  0.732  -0.922 H28 D06 50 
D06 H29 H29 H 0 1 N N N -45.695 13.984 16.359 2.812  -0.428 -1.834 H29 D06 51 
D06 H30 H30 H 0 1 N N N -46.979 11.686 17.604 4.103  2.295  -2.136 H30 D06 52 
D06 H31 H31 H 0 1 N N N -47.929 10.839 12.829 5.995  0.637  2.095  H31 D06 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D06 O18 C17 DOUB N N 1  
D06 C27 C26 SING N N 2  
D06 C27 N19 SING N N 3  
D06 C25 C26 DOUB Y N 4  
D06 C25 C24 SING Y N 5  
D06 C17 N19 SING N N 6  
D06 C17 C2  SING N N 7  
D06 C26 C21 SING Y N 8  
D06 N19 C20 SING N N 9  
D06 C4  C2  SING N N 10 
D06 C4  C11 SING N N 11 
D06 C4  C6  SING N N 12 
D06 N1  C2  SING N N 13 
D06 C24 C23 DOUB Y N 14 
D06 C10 C11 SING N N 15 
D06 C10 C8  SING N N 16 
D06 N12 C16 SING N N 17 
D06 N12 C8  SING N N 18 
D06 N12 C13 SING N N 19 
D06 C15 C16 SING N N 20 
D06 C15 C14 SING N N 21 
D06 C7  C6  SING N N 22 
D06 C7  C8  SING N N 23 
D06 C21 C20 SING N N 24 
D06 C21 C22 DOUB Y N 25 
D06 C14 C13 SING N N 26 
D06 C23 C22 SING Y N 27 
D06 C2  H1  SING N N 28 
D06 C4  H2  SING N N 29 
D06 C6  H3  SING N N 30 
D06 C6  H4  SING N N 31 
D06 C7  H5  SING N N 32 
D06 C7  H6  SING N N 33 
D06 C8  H7  SING N N 34 
D06 C11 H8  SING N N 35 
D06 C11 H9  SING N N 36 
D06 C15 H10 SING N N 37 
D06 C15 H11 SING N N 38 
D06 C16 H12 SING N N 39 
D06 C16 H13 SING N N 40 
D06 C23 H14 SING N N 41 
D06 C24 H15 SING N N 42 
D06 C27 H16 SING N N 43 
D06 C27 H17 SING N N 44 
D06 N1  H18 SING N N 45 
D06 N1  H19 SING N N 46 
D06 C10 H21 SING N N 47 
D06 C10 H22 SING N N 48 
D06 C13 H24 SING N N 49 
D06 C13 H25 SING N N 50 
D06 C14 H26 SING N N 51 
D06 C14 H27 SING N N 52 
D06 C20 H28 SING N N 53 
D06 C20 H29 SING N N 54 
D06 C22 H30 SING N N 55 
D06 C25 H31 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D06 SMILES           ACDLabs              12.01 "O=C(N1Cc2ccccc2C1)C(N)C1CCC(CC1)N1CCCC1"                                                                                                            
D06 InChI            InChI                1.03  "InChI=1S/C20H29N3O/c21-19(15-7-9-18(10-8-15)22-11-3-4-12-22)20(24)23-13-16-5-1-2-6-17(16)14-23/h1-2,5-6,15,18-19H,3-4,7-14,21H2/t15-,18-,19-/m0/s1" 
D06 InChIKey         InChI                1.03  SYXDQNGJEXFDND-SNRMKQJTSA-N                                                                                                                          
D06 SMILES_CANONICAL CACTVS               3.385 "N[C@@H]([C@@H]1CC[C@H](CC1)N2CCCC2)C(=O)N3Cc4ccccc4C3"                                                                                              
D06 SMILES           CACTVS               3.385 "N[CH]([CH]1CC[CH](CC1)N2CCCC2)C(=O)N3Cc4ccccc4C3"                                                                                                   
D06 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CN(C2)C(=O)[C@H](C3CCC(CC3)N4CCCC4)N"                                                                                                    
D06 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CN(C2)C(=O)C(C3CCC(CC3)N4CCCC4)N"                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D06 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-amino-1-(1,3-dihydro-2H-isoindol-2-yl)-2-[(1r,4S)-4-(pyrrolidin-1-yl)cyclohexyl]ethan-1-one" 
D06 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-azanyl-1-(1,3-dihydroisoindol-2-yl)-2-(4-pyrrolidin-1-ylcyclohexyl)ethanone"              
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D06 "Create component" 2021-11-23 RCSB 
D06 "Initial release"  2022-10-05 RCSB 
# 
