data_006
#

_chem_comp.id                                   006
_chem_comp.name                                 "(4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide"
_chem_comp.type                                 peptide-like
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C35 H41 N3 O6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        KNI-10006
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-07-03
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       631.782
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    006
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3FNU
_chem_comp.pdbx_subcomponent_list               "DBA 005 00B 00X"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
006  N2    N2    N  0  1  N  N  N   -8.586  -50.791  -75.488   -2.428   0.132  -1.353  N       005   1  
006  C20   C20   C  0  1  N  N  S   -7.689  -51.822  -74.952   -1.020   0.199  -0.951  CB1     005   2  
006  O20   O20   O  0  1  N  N  N   -6.237  -51.177  -73.103   -0.265  -0.064  -3.231  OB2     005   3  
006  C21   C21   C  0  1  N  N  N   -7.506  -52.856  -76.063   -0.514  -1.210  -0.633  CG      005   4  
006  O21   O21   O  0  1  N  N  N   -6.746  -48.936  -75.065    2.066   0.111  -2.015  O       005   5  
006  C22   C22   C  0  1  Y  N  N   -8.668  -53.826  -76.100   -1.247  -1.748   0.568  CD      005   6  
006  C23   C23   C  0  1  Y  N  N   -8.734  -54.881  -75.181   -2.421  -2.459   0.400  CE1     005   7  
006  C24   C24   C  0  1  Y  N  N   -9.806  -55.773  -75.219   -3.094  -2.952   1.503  CZ1     005   8  
006  C25   C25   C  0  1  Y  N  N  -10.807  -55.608  -76.178   -2.593  -2.736   2.772  CH      005   9  
006  C26   C26   C  0  1  Y  N  N  -10.740  -54.558  -77.097   -1.419  -2.026   2.940  CZ2     005  10  
006  C27   C27   C  0  1  Y  N  N   -9.670  -53.665  -77.059   -0.743  -1.537   1.838  CE2     005  11  
006  C28   C28   C  0  1  N  N  S   -6.326  -51.231  -74.538   -0.192   0.794  -2.091  CA      005  12  
006  C29   C29   C  0  1  N  N  N   -5.967  -49.882  -75.139    1.244   0.925  -1.652  C       005  13  
006  N30   N30   N  0  1  N  N  N   -5.024  -46.885  -78.142    4.851   0.705   0.240  N30     00X  14  
006  O30   O30   O  0  1  N  N  N   -5.653  -45.257  -76.096    7.473   0.683   0.520  O30     00X  15  
006  C31   C31   C  0  1  N  N  S   -4.093  -45.773  -77.936    5.362  -0.491   0.915  C31     00X  16  
006  C32   C32   C  0  1  Y  N  N   -4.237  -44.815  -79.050    5.414  -1.657  -0.049  C32     00X  17  
006  C33   C33   C  0  1  Y  N  N   -4.232  -45.125  -80.411    4.491  -2.088  -0.987  C33     00X  18  
006  C34   C34   C  0  1  Y  N  N   -4.383  -44.069  -81.316    4.759  -3.195  -1.768  C34     00X  19  
006  C35   C35   C  0  1  N  N  R   -4.391  -44.924  -76.684    6.822  -0.271   1.362  C35     00X  20  
006  C36   C36   C  0  1  Y  N  N   -4.384  -43.524  -78.600    6.608  -2.336   0.104  C36     00X  21  
006  C37   C37   C  0  1  Y  N  N   -4.534  -42.461  -79.489    6.875  -3.446  -0.680  C37     00X  22  
006  C38   C38   C  0  1  Y  N  N   -4.529  -42.753  -80.857    5.952  -3.875  -1.615  C38     00X  23  
006  C39   C39   C  0  1  N  N  N   -4.367  -43.443  -77.091    7.439  -1.674   1.182  C39     00X  24  
006  C40   C40   C  0  1  Y  N  N  -14.432  -48.651  -78.957   -9.751  -0.087  -0.269  "C4'"   DBA  25  
006  O40   O40   O  0  1  N  N  N  -10.278  -51.226  -74.049   -3.104   0.191   0.759  O1      DBA  26  
006  C41   C41   C  0  1  Y  N  N  -14.279  -49.966  -78.513   -9.026  -1.255  -0.121  "C3'"   DBA  27  
006  O41   O41   O  0  1  N  N  N  -10.951  -49.842  -76.967   -5.674   0.083   0.334  "O1'"   DBA  28  
006  C42   C42   C  0  1  Y  N  N  -13.119  -50.362  -77.846   -7.661  -1.201   0.080  "C2'"   DBA  29  
006  C43   C43   C  0  1  N  N  N  -12.996  -51.797  -77.387   -6.871  -2.474   0.241  CM2     DBA  30  
006  C44   C44   C  0  1  N  N  N  -11.201  -47.063  -77.866   -7.051   2.533   0.045  CM6     DBA  31  
006  C45   C45   C  0  1  Y  N  N  -12.101  -49.432  -77.617   -7.017   0.027   0.135  "C1'"   DBA  32  
006  C46   C46   C  0  1  Y  N  N  -12.260  -48.112  -78.072   -7.747   1.197  -0.014  "C6'"   DBA  33  
006  C47   C47   C  0  1  Y  N  N  -13.422  -47.724  -78.736   -9.112   1.138  -0.215  "C5'"   DBA  34  
006  C48   C48   C  0  1  N  N  N   -9.810  -50.590  -74.982   -3.397   0.135  -0.416  C1      DBA  35  
006  C49   C49   C  0  1  N  N  N  -10.648  -49.505  -75.612   -4.845   0.067  -0.830  C2      DBA  36  
006  C50   C50   C  0  1  N  N  N   -3.807  -50.920  -75.819    0.645   2.915  -0.306  CD      00B  37  
006  N50   N50   N  0  1  N  N  N   -4.756  -49.805  -75.731    1.615   1.949  -0.857  N       00B  38  
006  O50   O50   O  0  1  N  N  N   -5.994  -48.840  -77.943    2.757   0.182   0.752  O       00B  39  
006  S50   S50   S  0  1  N  N  N   -2.220  -50.199  -75.976    1.500   3.528   1.204  SG3     00B  40  
006  C51   C51   C  0  1  N  N  N   -2.690  -48.615  -76.561    3.180   3.396   0.459  CB      00B  41  
006  C52   C52   C  0  1  N  N  N   -1.994  -47.578  -75.679    3.530   4.656  -0.335  CG1     00B  42  
006  C53   C53   C  0  1  N  N  N   -2.211  -48.527  -78.011    4.235   3.112   1.530  CG2     00B  43  
006  C54   C54   C  0  1  N  N  R   -4.239  -48.551  -76.360    3.001   2.181  -0.479  CA      00B  44  
006  C55   C55   C  0  1  N  N  N   -5.113  -48.091  -77.542    3.526   0.951   0.215  C       00B  45  
006  HN2   HN2   H  0  1  N  N  N   -8.275  -50.224  -76.251   -2.662   0.091  -2.293  HN      005  46  
006  H20   H20   H  0  1  N  N  N   -8.121  -52.272  -74.046   -0.925   0.827  -0.065  HB1     005  47  
006  HO20  HO20  H  0  0  N  N  N   -5.397  -50.813  -72.851    0.068  -0.958  -3.073  HA      005  48  
006  H21   H21   H  0  1  N  N  N   -7.445  -52.335  -77.030   -0.691  -1.861  -1.489  HG      005  49  
006  H21A  H21A  H  0  0  N  N  N   -6.578  -53.417  -75.879    0.554  -1.172  -0.420  HGA     005  50  
006  H23   H23   H  0  1  N  N  N   -7.955  -55.004  -74.443   -2.813  -2.628  -0.592  HE1     005  51  
006  H24   H24   H  0  1  N  N  N   -9.861  -56.586  -74.511   -4.011  -3.507   1.371  HZ1     005  52  
006  H25   H25   H  0  1  N  N  N  -11.638  -56.296  -76.210   -3.118  -3.121   3.634  HH      005  53  
006  H26   H26   H  0  1  N  N  N  -11.517  -54.438  -77.837   -1.027  -1.856   3.932  HZ2     005  54  
006  H27   H27   H  0  1  N  N  N   -9.616  -52.852  -77.768    0.175  -0.982   1.969  HE2     005  55  
006  H28   H28   H  0  1  N  N  N   -5.581  -51.920  -74.962   -0.584   1.777  -2.350  HOB2    005  56  
006  HN30  HN30  H  0  0  N  N  N   -5.712  -46.723  -78.849    5.466   1.319  -0.189  HN30    00X  57  
006  HO30  HO30  H  0  0  N  N  N   -5.799  -44.714  -75.330    8.394   0.856   0.760  HO30    00X  58  
006  H31   H31   H  0  1  N  N  N   -3.103  -46.244  -77.847    4.736  -0.736   1.773  H31     00X  59  
006  H33   H33   H  0  1  N  N  N   -4.116  -46.143  -80.753    3.558  -1.558  -1.107  H33     00X  60  
006  H34   H34   H  0  1  N  N  N   -4.387  -44.270  -82.377    4.036  -3.529  -2.498  H34     00X  61  
006  H35   H35   H  0  1  N  N  N   -3.623  -45.130  -75.924    6.865   0.043   2.405  H35     00X  62  
006  H37   H37   H  0  1  N  N  N   -4.650  -41.448  -79.134    7.808  -3.977  -0.561  H37     00X  63  
006  H38   H38   H  0  1  N  N  N   -4.640  -41.951  -81.572    6.164  -4.741  -2.225  H38     00X  64  
006  H39   H39   H  0  1  N  N  N   -5.236  -42.895  -76.699    8.478  -1.592   0.861  H39     00X  65  
006  H39A  H39A  H  0  0  N  N  N   -3.470  -42.928  -76.717    7.373  -2.239   2.111  H39A    00X  66  
006  H40   H40   H  0  1  N  N  N  -15.334  -48.355  -79.471  -10.818  -0.132  -0.431  "H4'"   DBA  67  
006  H41   H41   H  0  1  N  N  N  -15.067  -50.684  -78.688   -9.528  -2.211  -0.164  "H3'"   DBA  68  
006  H43   H43   H  0  1  N  N  N  -12.531  -52.398  -78.182   -6.529  -2.816  -0.736  HM21    DBA  69  
006  H43A  H43A  H  0  0  N  N  N  -12.372  -51.840  -76.482   -6.010  -2.289   0.883  HM22    DBA  70  
006  H43B  H43B  H  0  0  N  N  N  -13.996  -52.197  -77.162   -7.503  -3.239   0.693  HM23    DBA  71  
006  H44   H44   H  0  1  N  N  N  -10.510  -47.066  -78.722   -6.731   2.820  -0.956  HM61    DBA  72  
006  H44A  H44A  H  0  0  N  N  N  -11.676  -46.074  -77.782   -7.737   3.283   0.437  HM62    DBA  73  
006  H44B  H44B  H  0  0  N  N  N  -10.643  -47.282  -76.944   -6.180   2.460   0.698  HM63    DBA  74  
006  H47   H47   H  0  1  N  N  N  -13.537  -46.706  -79.078   -9.681   2.049  -0.331  "H5'"   DBA  75  
006  H49   H49   H  0  1  N  N  N  -10.090  -48.557  -75.590   -5.020  -0.853  -1.388  H21     DBA  76  
006  H49A  H49A  H  0  0  N  N  N  -11.585  -49.397  -75.047   -5.083   0.924  -1.459  H22     DBA  77  
006  H50   H50   H  0  1  N  N  N   -4.033  -51.552  -76.691    0.469   3.729  -1.009  HD      00B  78  
006  H50A  H50A  H  0  0  N  N  N   -3.860  -51.545  -74.915   -0.291   2.419  -0.049  HDA     00B  79  
006  H52   H52   H  0  1  N  N  N   -2.266  -46.567  -76.017    3.535   5.517   0.334  HG1     00B  80  
006  H52A  H52A  H  0  0  N  N  N   -2.311  -47.713  -74.634    4.516   4.540  -0.784  HG1A    00B  81  
006  H52B  H52B  H  0  0  N  N  N   -0.904  -47.708  -75.751    2.789   4.809  -1.119  HG1B    00B  82  
006  H53   H53   H  0  1  N  N  N   -2.482  -47.546  -78.428    3.986   2.187   2.049  HG2     00B  83  
006  H53A  H53A  H  0  0  N  N  N   -1.118  -48.650  -78.044    5.213   3.013   1.059  HG2A    00B  84  
006  H53B  H53B  H  0  0  N  N  N   -2.688  -49.322  -78.603    4.258   3.935   2.245  HG2B    00B  85  
006  H54   H54   H  0  1  N  N  N   -4.352  -47.704  -75.667    3.587   2.346  -1.383  HA      00B  86  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
006  N2   C48   SING  N  N   1  
006  N2   C20   SING  N  N   2  
006  N2   HN2   SING  N  N   3  
006  C21  C20   SING  N  N   4  
006  C20  C28   SING  N  N   5  
006  C20  H20   SING  N  N   6  
006  C28  O20   SING  N  N   7  
006  O20  HO20  SING  N  N   8  
006  C22  C21   SING  N  N   9  
006  C21  H21   SING  N  N  10  
006  C21  H21A  SING  N  N  11  
006  C29  O21   DOUB  N  N  12  
006  C27  C22   DOUB  Y  N  13  
006  C22  C23   SING  Y  N  14  
006  C24  C23   DOUB  Y  N  15  
006  C23  H23   SING  N  N  16  
006  C25  C24   SING  Y  N  17  
006  C24  H24   SING  N  N  18  
006  C26  C25   DOUB  Y  N  19  
006  C25  H25   SING  N  N  20  
006  C26  C27   SING  Y  N  21  
006  C26  H26   SING  N  N  22  
006  C27  H27   SING  N  N  23  
006  C29  C28   SING  N  N  24  
006  C28  H28   SING  N  N  25  
006  N50  C29   SING  N  N  26  
006  N30  C31   SING  N  N  27  
006  N30  C55   SING  N  N  28  
006  N30  HN30  SING  N  N  29  
006  C35  O30   SING  N  N  30  
006  O30  HO30  SING  N  N  31  
006  C32  C31   SING  N  N  32  
006  C31  C35   SING  N  N  33  
006  C31  H31   SING  N  N  34  
006  C33  C32   DOUB  Y  N  35  
006  C32  C36   SING  Y  N  36  
006  C34  C33   SING  Y  N  37  
006  C33  H33   SING  N  N  38  
006  C34  C38   DOUB  Y  N  39  
006  C34  H34   SING  N  N  40  
006  C39  C35   SING  N  N  41  
006  C35  H35   SING  N  N  42  
006  C37  C36   DOUB  Y  N  43  
006  C36  C39   SING  N  N  44  
006  C38  C37   SING  Y  N  45  
006  C37  H37   SING  N  N  46  
006  C38  H38   SING  N  N  47  
006  C39  H39   SING  N  N  48  
006  C39  H39A  SING  N  N  49  
006  C40  C47   DOUB  Y  N  50  
006  C40  C41   SING  Y  N  51  
006  C40  H40   SING  N  N  52  
006  C48  O40   DOUB  N  N  53  
006  C41  C42   DOUB  Y  N  54  
006  C41  H41   SING  N  N  55  
006  C45  O41   SING  N  N  56  
006  O41  C49   SING  N  N  57  
006  C42  C45   SING  Y  N  58  
006  C42  C43   SING  N  N  59  
006  C43  H43   SING  N  N  60  
006  C43  H43A  SING  N  N  61  
006  C43  H43B  SING  N  N  62  
006  C46  C44   SING  N  N  63  
006  C44  H44   SING  N  N  64  
006  C44  H44A  SING  N  N  65  
006  C44  H44B  SING  N  N  66  
006  C46  C45   DOUB  Y  N  67  
006  C47  C46   SING  Y  N  68  
006  C47  H47   SING  N  N  69  
006  C49  C48   SING  N  N  70  
006  C49  H49   SING  N  N  71  
006  C49  H49A  SING  N  N  72  
006  S50  C50   SING  N  N  73  
006  C50  N50   SING  N  N  74  
006  C50  H50   SING  N  N  75  
006  C50  H50A  SING  N  N  76  
006  C54  N50   SING  N  N  77  
006  O50  C55   DOUB  N  N  78  
006  C51  S50   SING  N  N  79  
006  C53  C51   SING  N  N  80  
006  C51  C54   SING  N  N  81  
006  C51  C52   SING  N  N  82  
006  C52  H52   SING  N  N  83  
006  C52  H52A  SING  N  N  84  
006  C52  H52B  SING  N  N  85  
006  C53  H53   SING  N  N  86  
006  C53  H53A  SING  N  N  87  
006  C53  H53B  SING  N  N  88  
006  C55  C54   SING  N  N  89  
006  C54  H54   SING  N  N  90  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
006  SMILES            ACDLabs               12.01  "O=C(NC2c1ccccc1CC2O)C5N(C(=O)C(O)C(NC(=O)COc3c(cccc3C)C)Cc4ccccc4)CSC5(C)C"  
006  SMILES_CANONICAL  CACTVS                3.370  "Cc1cccc(C)c1OCC(=O)N[C@@H](Cc2ccccc2)[C@H](O)C(=O)N3CSC(C)(C)[C@H]3C(=O)N[C@@H]4[C@H](O)Cc5ccccc45"  
006  SMILES            CACTVS                3.370  "Cc1cccc(C)c1OCC(=O)N[CH](Cc2ccccc2)[CH](O)C(=O)N3CSC(C)(C)[CH]3C(=O)N[CH]4[CH](O)Cc5ccccc45"  
006  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "Cc1cccc(c1OCC(=O)N[C@@H](Cc2ccccc2)[C@@H](C(=O)N3CSC([C@H]3C(=O)N[C@H]4c5ccccc5C[C@H]4O)(C)C)O)C"  
006  SMILES            "OpenEye OEToolkits"  1.7.0  "Cc1cccc(c1OCC(=O)NC(Cc2ccccc2)C(C(=O)N3CSC(C3C(=O)NC4c5ccccc5CC4O)(C)C)O)C"  
006  InChI             InChI                 1.03   "InChI=1S/C35H41N3O6S/c1-21-11-10-12-22(2)31(21)44-19-28(40)36-26(17-23-13-6-5-7-14-23)30(41)34(43)38-20-45-35(3,4)32(38)33(42)37-29-25-16-9-8-15-24(25)18-27(29)39/h5-16,26-27,29-30,32,39,41H,17-20H2,1-4H3,(H,36,40)(H,37,42)/t26-,27+,29-,30-,32+/m0/s1"  
006  InChIKey          InChI                 1.03   KKTYZYHUPKXLPL-RIQJEONASA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
006  "SYSTEMATIC NAME"  ACDLabs               12.01  "(4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide"  
006  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(4R)-3-[(2S,3S)-3-[2-(2,6-dimethylphenoxy)ethanoylamino]-2-hydroxy-4-phenyl-butanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
006  "Create component"      2008-07-03  RCSB  
006  "Modify aromatic_flag"  2011-06-04  RCSB  
006  "Modify descriptor"     2011-06-04  RCSB  
006  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     006
_pdbx_chem_comp_synonyms.name        KNI-10006
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
