data_SN5
#

_chem_comp.id                                   SN5
_chem_comp.name                                 "2-deoxy-2-(ethanethioylamino)-beta-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H15 N O5 S"
_chem_comp.mon_nstd_parent_comp_id              GCS
_chem_comp.pdbx_synonyms                        
;N-ethanethioyl-beta-D-glucosamine; 2-deoxy-2-(ethanethioylamino)-beta-D-glucose;
2-deoxy-2-(ethanethioylamino)-D-glucose; 2-deoxy-2-(ethanethioylamino)-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-06-04
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       237.273
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SN5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2WK2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  SN5  N-ethanethioyl-beta-D-glucosamine               PDB  ?  
2  SN5  "2-deoxy-2-(ethanethioylamino)-beta-D-glucose"  PDB  ?  
3  SN5  "2-deoxy-2-(ethanethioylamino)-D-glucose"       PDB  ?  
4  SN5  "2-deoxy-2-(ethanethioylamino)-glucose"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SN5  C1    C1    C  0  1  N  N  R  17.335  74.537   1.206  -0.010  -0.955  -0.604  C1    SN5   1  
SN5  S7    S7    S  0  1  N  N  N  17.684  74.450   5.152  -2.951  -0.885   1.046  S7    SN5   2  
SN5  C2    C2    C  0  1  N  N  R  18.423  74.563   2.254  -0.567   0.342  -0.011  C2    SN5   3  
SN5  C3    C3    C  0  1  N  N  R  19.770  74.675   1.577   0.433   1.477  -0.255  C3    SN5   4  
SN5  C4    C4    C  0  1  N  N  S  19.941  73.695   0.406   1.784   1.092   0.355  C4    SN5   5  
SN5  C5    C5    C  0  1  N  N  R  18.655  73.554  -0.414   2.250  -0.234  -0.252  C5    SN5   6  
SN5  C6    C6    C  0  1  N  N  N  18.685  72.390  -1.378   3.570  -0.656   0.396  C6    SN5   7  
SN5  C7    C7    C  0  1  N  N  N  17.802  75.734   4.301  -2.986   0.118  -0.199  C7    SN5   8  
SN5  C8    C8    C  0  1  N  N  N  17.505  77.018   4.987  -4.298   0.452  -0.861  C8    SN5   9  
SN5  N2    N2    N  0  1  N  N  N  18.149  75.764   3.011  -1.842   0.666  -0.655  N2    SN5  10  
SN5  O3    O3    O  0  1  N  N  N  20.725  74.349   2.550  -0.045   2.675   0.359  O3    SN5  11  
SN5  O4    O4    O  0  1  N  N  N  20.995  74.086  -0.466   2.744   2.111   0.071  O4    SN5  12  
SN5  O5    O5    O  0  1  N  N  N  17.526  73.391   0.401   1.262  -1.238  -0.016  O5    SN5  13  
SN5  O6    O6    O  0  1  N  N  N  18.379  72.908  -2.661   4.065  -1.830  -0.250  O6    SN5  14  
SN5  O1    O1    O  0  1  N  Y  N  16.103  74.345   1.852  -0.911  -2.030  -0.332  O1    SN5  15  
SN5  H81C  H81C  H  0  0  N  N  N  17.432  76.847   6.071  -4.737   1.325  -0.378  H81C  SN5  16  
SN5  H82C  H82C  H  0  0  N  N  N  18.312  77.737   4.783  -4.128   0.668  -1.916  H82C  SN5  17  
SN5  H83C  H83C  H  0  0  N  N  N  16.552  77.421   4.614  -4.978  -0.395  -0.768  H83C  SN5  18  
SN5  HN21  H2    H  0  0  N  N  N  18.222  76.650   2.552  -1.864   1.275  -1.410  HN21  SN5  19  
SN5  H2    HA    H  0  1  N  N  N  18.442  73.660   2.882  -0.721   0.215   1.061  H2    SN5  20  
SN5  H1    H1    H  0  1  N  N  N  17.357  75.468   0.621   0.105  -0.842  -1.682  H1    SN5  21  
SN5  H3    H3    H  0  1  N  N  N  19.876  75.691   1.168   0.548   1.637  -1.327  H3    SN5  22  
SN5  HO1   HB    H  0  1  N  Y  N  16.241  74.302   2.791  -0.621  -2.884  -0.679  HO1   SN5  23  
SN5  HO3   HC    H  0  1  N  Y  N  21.580  74.275   2.143   0.540   3.436   0.244  HO3   SN5  24  
SN5  H4    H4    H  0  1  N  N  N  20.189  72.725   0.862   1.678   0.982   1.435  H4    SN5  25  
SN5  HO4   HD    H  0  1  N  Y  N  20.659  74.173  -1.350   3.625   1.933   0.429  HO4   SN5  26  
SN5  H5    H5    H  0  1  N  N  N  18.591  74.494  -0.981   2.395  -0.111  -1.325  H5    SN5  27  
SN5  H61   H61C  H  0  1  N  N  N  19.681  71.923  -1.382   4.299   0.149   0.295  H61   SN5  28  
SN5  H62   H62C  H  0  1  N  N  N  17.958  71.618  -1.083   3.406  -0.865   1.453  H62   SN5  29  
SN5  HO6   H6    H  0  1  N  Y  N  18.311  73.854  -2.613   4.901  -2.155   0.110  HO6   SN5  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SN5  S7  C7    DOUB  N  N   1  
SN5  C7  C8    SING  N  N   2  
SN5  C7  N2    SING  N  N   3  
SN5  N2  C2    SING  N  N   4  
SN5  C2  C1    SING  N  N   5  
SN5  C2  C3    SING  N  N   6  
SN5  C1  O1    SING  N  N   7  
SN5  C1  O5    SING  N  N   8  
SN5  C3  O3    SING  N  N   9  
SN5  C3  C4    SING  N  N  10  
SN5  C4  O4    SING  N  N  11  
SN5  C4  C5    SING  N  N  12  
SN5  C5  O5    SING  N  N  13  
SN5  C5  C6    SING  N  N  14  
SN5  C6  O6    SING  N  N  15  
SN5  C8  H81C  SING  N  N  16  
SN5  C8  H82C  SING  N  N  17  
SN5  C8  H83C  SING  N  N  18  
SN5  N2  HN21  SING  N  N  19  
SN5  C2  H2    SING  N  N  20  
SN5  C1  H1    SING  N  N  21  
SN5  C3  H3    SING  N  N  22  
SN5  O1  HO1   SING  N  N  23  
SN5  O3  HO3   SING  N  N  24  
SN5  C4  H4    SING  N  N  25  
SN5  O4  HO4   SING  N  N  26  
SN5  C5  H5    SING  N  N  27  
SN5  C6  H61   SING  N  N  28  
SN5  C6  H62   SING  N  N  29  
SN5  O6  HO6   SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SN5  SMILES            ACDLabs               10.04  "S=C(NC1C(O)C(O)C(OC1O)CO)C"  
SN5  SMILES_CANONICAL  CACTVS                3.352  "CC(=S)N[C@H]1[C@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O"  
SN5  SMILES            CACTVS                3.352  "CC(=S)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O"  
SN5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "CC(=S)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O)O"  
SN5  SMILES            "OpenEye OEToolkits"  1.6.1  "CC(=S)NC1C(C(C(OC1O)CO)O)O"  
SN5  InChI             InChI                 1.03   "InChI=1S/C8H15NO5S/c1-3(15)9-5-7(12)6(11)4(2-10)14-8(5)13/h4-8,10-13H,2H2,1H3,(H,9,15)/t4-,5-,6-,7-,8-/m1/s1"  
SN5  InChIKey          InChI                 1.03   BIHKKHHUWVSGSD-FMDGEEDCSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SN5  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-deoxy-2-(ethanethioylamino)-beta-D-glucopyranose"  
SN5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "N-[(2R,3R,4R,5S,6R)-2,4,5-trihydroxy-6-(hydroxymethyl)oxan-3-yl]ethanethioamide"  
#
_pdbx_chem_comp_related.comp_id            SN5
_pdbx_chem_comp_related.related_comp_id    GCS
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  SN5  C1    GCS  C1    "Carbohydrate core"  
 2  SN5  C2    GCS  C2    "Carbohydrate core"  
 3  SN5  C3    GCS  C3    "Carbohydrate core"  
 4  SN5  C4    GCS  C4    "Carbohydrate core"  
 5  SN5  C5    GCS  C5    "Carbohydrate core"  
 6  SN5  C6    GCS  C6    "Carbohydrate core"  
 7  SN5  N2    GCS  N2    "Carbohydrate core"  
 8  SN5  O1    GCS  O1    "Carbohydrate core"  
 9  SN5  O3    GCS  O3    "Carbohydrate core"  
10  SN5  O4    GCS  O4    "Carbohydrate core"  
11  SN5  O5    GCS  O5    "Carbohydrate core"  
12  SN5  O6    GCS  O6    "Carbohydrate core"  
13  SN5  H1    GCS  H1    "Carbohydrate core"  
14  SN5  HN21  GCS  HN21  "Carbohydrate core"  
15  SN5  H3    GCS  H3    "Carbohydrate core"  
16  SN5  H4    GCS  H4    "Carbohydrate core"  
17  SN5  H5    GCS  H5    "Carbohydrate core"  
18  SN5  HO6   GCS  HO6   "Carbohydrate core"  
19  SN5  H61   GCS  H61   "Carbohydrate core"  
20  SN5  H62   GCS  H62   "Carbohydrate core"  
21  SN5  H2    GCS  H2    "Carbohydrate core"  
22  SN5  HO1   GCS  HO1   "Carbohydrate core"  
23  SN5  HO3   GCS  HO3   "Carbohydrate core"  
24  SN5  HO4   GCS  HO4   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
SN5  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
SN5  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
SN5  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
SN5  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SN5  "Create component"          2009-06-04  EBI   
SN5  "Modify descriptor"         2011-06-04  RCSB  
SN5  "Other modification"        2020-07-03  RCSB  
SN5  "Modify parent residue"     2020-07-17  RCSB  
SN5  "Modify synonyms"           2020-07-17  RCSB  
SN5  "Modify internal type"      2020-07-17  RCSB  
SN5  "Modify linking type"       2020-07-17  RCSB  
SN5  "Modify atom id"            2020-07-17  RCSB  
SN5  "Modify component atom id"  2020-07-17  RCSB  
SN5  "Modify leaving atom flag"  2020-07-17  RCSB  
##
