data_SH5
# 
_chem_comp.id                                    SH5 
_chem_comp.name                                  "5'-O-[(S)-[(8-bromooctanoyl)oxy](hydroxy)phosphoryl]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H27 Br N5 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-04-24 
_chem_comp.pdbx_modified_date                    2017-03-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        552.313 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SH5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4PDU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SH5 BRA   BR1 BR 0 0 N N N -19.223 -1.342 40.426 -12.026 -1.245 -0.123 BRA   SH5 1  
SH5 CAB   C1  C  0 1 N N N -18.294 0.297  40.955 -10.314 -1.402 0.829  CAB   SH5 2  
SH5 CAC   C2  C  0 1 N N N -17.564 0.955  39.784 -9.230  -0.645 0.058  CAC   SH5 3  
SH5 CAD   C3  C  0 1 N N N -18.572 1.380  38.714 -7.897  -0.767 0.800  CAD   SH5 4  
SH5 CAE   C4  C  0 1 N N N -17.897 2.268  37.672 -6.814  -0.010 0.029  CAE   SH5 5  
SH5 CAF   C5  C  0 1 N N N -18.637 2.178  36.339 -5.481  -0.131 0.770  CAF   SH5 6  
SH5 CAG   C6  C  0 1 N N N -17.831 2.867  35.236 -4.398  0.626  -0.001 CAG   SH5 7  
SH5 CAH   C7  C  0 1 N N N -18.597 2.734  33.920 -3.065  0.504  0.741  CAH   SH5 8  
SH5 CAI   C8  C  0 1 N N N -17.730 2.935  32.664 -1.998  1.249  -0.018 CAI   SH5 9  
SH5 OAJ   O1  O  0 1 N N N -16.547 3.285  32.698 -2.275  1.819  -1.047 OAJ   SH5 10 
SH5 OAK   O2  O  0 1 N N N -18.414 2.670  31.517 -0.739  1.280  0.448  OAK   SH5 11 
SH5 PAL   P1  P  0 1 N N N -17.884 3.134  30.069 0.342   2.097  -0.421 PAL   SH5 12 
SH5 OAN   O3  O  0 1 N N N -17.499 4.614  30.284 -0.044  3.660  -0.425 OAN   SH5 13 
SH5 OAM   O4  O  0 1 N N N -18.916 2.920  29.042 0.348   1.586  -1.809 OAM   SH5 14 
SH5 "O5'" O5  O  0 1 N N N -16.523 2.395  29.744 1.804   1.908  0.227  "O5'" SH5 15 
SH5 "C5'" C9  C  0 1 N N N -16.564 1.043  29.332 2.994   2.424  -0.373 "C5'" SH5 16 
SH5 "C4'" C10 C  0 1 N N R -15.219 0.652  28.758 4.200   2.067  0.498  "C4'" SH5 17 
SH5 "O4'" O6  O  0 1 N N N -14.176 0.824  29.741 4.401   0.644  0.495  "O4'" SH5 18 
SH5 "C3'" C11 C  0 1 N N S -15.229 -0.832 28.433 5.474   2.711  -0.083 "C3'" SH5 19 
SH5 "O3'" O7  O  0 1 N N N -15.867 -1.072 27.152 6.061   3.603  0.867  "O3'" SH5 20 
SH5 "C2'" C12 C  0 1 N N R -13.758 -1.083 28.380 6.414   1.511  -0.356 "C2'" SH5 21 
SH5 "O2'" O8  O  0 1 N N N -13.174 -0.451 27.240 7.759   1.823  0.014  "O2'" SH5 22 
SH5 "C1'" C13 C  0 1 N N R -13.291 -0.332 29.623 5.825   0.419  0.572  "C1'" SH5 23 
SH5 N9    N1  N  0 1 Y N N -13.361 -1.142 30.845 6.164   -0.917 0.076  N9    SH5 24 
SH5 C8    C14 C  0 1 Y N N -13.876 -2.348 31.119 5.385   -1.703 -0.720 C8    SH5 25 
SH5 N7    N2  N  0 1 Y N N -13.661 -2.613 32.406 5.995   -2.826 -0.970 N7    SH5 26 
SH5 C5    C15 C  0 1 Y N N -13.001 -1.569 32.925 7.200   -2.831 -0.351 C5    SH5 27 
SH5 C4    C16 C  0 1 Y N N -12.821 -0.659 31.956 7.325   -1.605 0.323  C4    SH5 28 
SH5 N3    N3  N  0 1 Y N N -12.186 0.511  32.189 8.434   -1.356 1.012  N3    SH5 29 
SH5 C2    C17 C  0 1 Y N N -11.709 0.777  33.467 9.406   -2.243 1.062  C2    SH5 30 
SH5 N1    N4  N  0 1 Y N N -11.903 -0.187 34.457 9.335   -3.408 0.443  N1    SH5 31 
SH5 C6    C18 C  0 1 Y N N -12.540 -1.327 34.155 8.262   -3.747 -0.264 C6    SH5 32 
SH5 N6    N5  N  0 1 N N N -12.736 -2.267 35.079 8.198   -4.969 -0.911 N6    SH5 33 
SH5 H1    H1  H  0 1 N N N -17.560 0.051  41.736 -10.413 -0.976 1.828  H1    SH5 34 
SH5 H2    H2  H  0 1 N N N -19.032 1.008  41.356 -10.036 -2.453 0.908  H2    SH5 35 
SH5 H3    H3  H  0 1 N N N -16.851 0.238  39.350 -9.130  -1.070 -0.940 H3    SH5 36 
SH5 H4    H4  H  0 1 N N N -17.020 1.840  40.145 -9.507  0.406  -0.020 H4    SH5 37 
SH5 H5    H5  H  0 1 N N N -19.392 1.938  39.189 -7.997  -0.341 1.798  H5    SH5 38 
SH5 H6    H6  H  0 1 N N N -18.976 0.484  38.220 -7.620  -1.818 0.879  H6    SH5 39 
SH5 H7    H7  H  0 1 N N N -16.857 1.938  37.533 -6.714  -0.435 -0.970 H7    SH5 40 
SH5 H8    H8  H  0 1 N N N -17.907 3.311  38.023 -7.091  1.041  -0.050 H8    SH5 41 
SH5 H9    H9  H  0 1 N N N -19.616 2.670  36.434 -5.581  0.294  1.769  H9    SH5 42 
SH5 H10   H10 H  0 1 N N N -18.782 1.120  36.075 -5.204  -1.183 0.849  H10   SH5 43 
SH5 H11   H11 H  0 1 N N N -16.846 2.387  35.142 -4.298  0.200  -0.999 H11   SH5 44 
SH5 H12   H12 H  0 1 N N N -17.699 3.931  35.482 -4.675  1.677  -0.079 H12   SH5 45 
SH5 H13   H13 H  0 1 N N N -19.399 3.487  33.910 -3.164  0.929  1.740  H13   SH5 46 
SH5 H14   H14 H  0 1 N N N -19.038 1.727  33.878 -2.788  -0.547 0.820  H14   SH5 47 
SH5 H15   H15 H  0 1 N N N -18.008 5.162  29.699 -0.067  4.062  0.454  H15   SH5 48 
SH5 H16   H16 H  0 1 N N N -17.342 0.917  28.564 3.120   1.989  -1.364 H16   SH5 49 
SH5 H17   H17 H  0 1 N N N -16.794 0.403  30.196 2.916   3.508  -0.459 H17   SH5 50 
SH5 H18   H18 H  0 1 N N N -15.010 1.236  27.850 4.037   2.417  1.518  H18   SH5 51 
SH5 H19   H19 H  0 1 N N N -15.703 -1.407 29.242 5.247   3.237  -1.010 H19   SH5 52 
SH5 H20   H20 H  0 1 N N N -16.799 -0.902 27.225 6.867   4.037  0.553  H20   SH5 53 
SH5 H21   H21 H  0 1 N N N -13.521 -2.155 28.445 6.360   1.205  -1.400 H21   SH5 54 
SH5 H22   H22 H  0 1 N N N -12.240 -0.623 27.226 8.141   2.562  -0.479 H22   SH5 55 
SH5 H23   H23 H  0 1 N N N -12.257 0.008  29.465 6.180   0.551  1.594  H23   SH5 56 
SH5 H24   H24 H  0 1 N N N -14.380 -2.995 30.416 4.407   -1.434 -1.089 H24   SH5 57 
SH5 H25   H25 H  0 1 N N N -11.202 1.705  33.688 10.294  -2.010 1.630  H25   SH5 58 
SH5 H26   H26 H  0 1 N N N -12.346 -1.966 35.949 7.413   -5.202 -1.432 H26   SH5 59 
SH5 H27   H27 H  0 1 N N N -13.717 -2.425 35.191 8.938   -5.593 -0.843 H27   SH5 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SH5 "O3'" "C3'" SING N N 1  
SH5 "O2'" "C2'" SING N N 2  
SH5 "C2'" "C3'" SING N N 3  
SH5 "C2'" "C1'" SING N N 4  
SH5 "C3'" "C4'" SING N N 5  
SH5 "C4'" "C5'" SING N N 6  
SH5 "C4'" "O4'" SING N N 7  
SH5 OAM   PAL   DOUB N N 8  
SH5 "C5'" "O5'" SING N N 9  
SH5 "C1'" "O4'" SING N N 10 
SH5 "C1'" N9    SING N N 11 
SH5 "O5'" PAL   SING N N 12 
SH5 PAL   OAN   SING N N 13 
SH5 PAL   OAK   SING N N 14 
SH5 N9    C8    SING Y N 15 
SH5 N9    C4    SING Y N 16 
SH5 C8    N7    DOUB Y N 17 
SH5 OAK   CAI   SING N N 18 
SH5 C4    N3    DOUB Y N 19 
SH5 C4    C5    SING Y N 20 
SH5 N3    C2    SING Y N 21 
SH5 N7    C5    SING Y N 22 
SH5 CAI   OAJ   DOUB N N 23 
SH5 CAI   CAH   SING N N 24 
SH5 C5    C6    DOUB Y N 25 
SH5 C2    N1    DOUB Y N 26 
SH5 CAH   CAG   SING N N 27 
SH5 C6    N1    SING Y N 28 
SH5 C6    N6    SING N N 29 
SH5 CAG   CAF   SING N N 30 
SH5 CAF   CAE   SING N N 31 
SH5 CAE   CAD   SING N N 32 
SH5 CAD   CAC   SING N N 33 
SH5 CAC   CAB   SING N N 34 
SH5 BRA   CAB   SING N N 35 
SH5 CAB   H1    SING N N 36 
SH5 CAB   H2    SING N N 37 
SH5 CAC   H3    SING N N 38 
SH5 CAC   H4    SING N N 39 
SH5 CAD   H5    SING N N 40 
SH5 CAD   H6    SING N N 41 
SH5 CAE   H7    SING N N 42 
SH5 CAE   H8    SING N N 43 
SH5 CAF   H9    SING N N 44 
SH5 CAF   H10   SING N N 45 
SH5 CAG   H11   SING N N 46 
SH5 CAG   H12   SING N N 47 
SH5 CAH   H13   SING N N 48 
SH5 CAH   H14   SING N N 49 
SH5 OAN   H15   SING N N 50 
SH5 "C5'" H16   SING N N 51 
SH5 "C5'" H17   SING N N 52 
SH5 "C4'" H18   SING N N 53 
SH5 "C3'" H19   SING N N 54 
SH5 "O3'" H20   SING N N 55 
SH5 "C2'" H21   SING N N 56 
SH5 "O2'" H22   SING N N 57 
SH5 "C1'" H23   SING N N 58 
SH5 C8    H24   SING N N 59 
SH5 C2    H25   SING N N 60 
SH5 N6    H26   SING N N 61 
SH5 N6    H27   SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SH5 SMILES           ACDLabs              12.01 "BrCCCCCCCC(=O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"                                                                                                                                               
SH5 InChI            InChI                1.03  "InChI=1S/C18H27BrN5O8P/c19-7-5-3-1-2-4-6-12(25)32-33(28,29)30-8-11-14(26)15(27)18(31-11)24-10-23-13-16(20)21-9-22-17(13)24/h9-11,14-15,18,26-27H,1-8H2,(H,28,29)(H2,20,21,22)/t11-,14-,15-,18-/m1/s1" 
SH5 InChIKey         InChI                1.03  UBTOIYSSWKLJCN-XKLVTHTNSA-N                                                                                                                                                                            
SH5 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)OC(=O)CCCCCCCBr)[C@@H](O)[C@H]3O"                                                                                                                           
SH5 SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(=O)CCCCCCCBr)[CH](O)[CH]3O"                                                                                                                                 
SH5 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OC(=O)CCCCCCCBr)O)O)N"                                                                                                                       
SH5 SMILES           "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC(=O)CCCCCCCBr)O)O)N"                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SH5 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(S)-[(8-bromooctanoyl)oxy](hydroxy)phosphoryl]adenosine"                                                       
SH5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] 8-bromanyloctanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SH5 "Create component"  2014-04-24 RCSB 
SH5 "Modify descriptor" 2014-09-05 RCSB 
SH5 "Initial release"   2017-03-15 RCSB 
# 
