data_RY5
#

_chem_comp.id                                   RY5
_chem_comp.name                                 "(3~{S})-6-chloranyl-3'-(1,2-oxazol-3-ylmethyl)spiro[1,2-dihydroindene-3,5'-imidazolidine]-2',4'-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H12 Cl N3 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-02
_chem_comp.pdbx_modified_date                   2022-02-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       317.727
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RY5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AU4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RY5  C1   C1   C   0  1  Y  N  N  12.441  -0.376  22.998  -3.638  -0.962  -0.200  C1   RY5   1  
RY5  C10  C2   C   0  1  N  N  N   6.810  -0.994  19.015   3.295   0.707   0.605  C10  RY5   2  
RY5  C11  C3   C   0  1  Y  N  N   6.126   0.253  18.556   3.485  -0.773   0.395  C11  RY5   3  
RY5  C12  C4   C   0  1  Y  N  N   5.144   1.016  19.204   4.135  -1.398  -0.694  C12  RY5   4  
RY5  C13  C5   C   0  1  Y  N  N   4.859   2.059  18.398   4.041  -2.720  -0.416  C13  RY5   5  
RY5  C14  C6   C   0  1  N  N  N   8.014   0.050  20.940   0.850   1.115   0.835  C14  RY5   6  
RY5  C15  C7   C   0  1  Y  N  N  11.648   0.673  23.438  -3.590   0.231   0.495  C15  RY5   7  
RY5  C2   C8   C   0  1  Y  N  N  11.919  -1.475  22.348  -2.530  -1.392  -0.909  C2   RY5   8  
RY5  C3   C9   C   0  1  Y  N  N  10.547  -1.543  22.127  -1.383  -0.623  -0.926  C3   RY5   9  
RY5  C4   C10  C   0  1  Y  N  N   9.740  -0.521  22.588  -1.334   0.577  -0.237  C4   RY5  10  
RY5  C5   C11  C   0  1  Y  N  N  10.281   0.591  23.215  -2.441   1.002   0.480  C5   RY5  11  
RY5  C6   C12  C   0  1  N  N  N   9.227   1.594  23.574  -2.139   2.327   1.149  C6   RY5  12  
RY5  C7   C13  C   0  1  N  N  N   7.923   0.806  23.432  -0.893   2.876   0.419  C7   RY5  13  
RY5  C8   C14  C   0  1  N  N  S   8.256  -0.322  22.431  -0.231   1.592  -0.100  C8   RY5  14  
RY5  C9   C15  C   0  1  N  N  N   6.693  -1.744  21.444   1.750   1.511  -1.161  C9   RY5  15  
RY5  N1   N1   N   0  1  N  N  N   7.396  -1.499  22.560   0.455   1.822  -1.371  N1   RY5  16  
RY5  N2   N2   N   0  1  N  N  N   7.121  -0.862  20.439   1.980   1.107   0.096  N2   RY5  17  
RY5  N3   N3   N   0  1  Y  N  N   6.441   0.796  17.413   3.089  -1.730   1.184  N3   RY5  18  
RY5  O1   O1   O   0  1  N  N  N   5.847  -2.608  21.293   2.612   1.588  -2.015  O1   RY5  19  
RY5  O2   O2   O   0  1  Y  N  N   5.630   1.960  17.301   3.383  -2.818   0.748  O2   RY5  20  
RY5  O3   O3   O   0  1  N  N  N   8.586   0.929  20.321   0.731   0.805   2.001  O3   RY5  21  
RY5  CL1  CL1  CL  0  0  N  N  N  14.162  -0.304  23.265  -5.083  -1.924  -0.178  CL1  RY5  22  
RY5  H1   H1   H   0  1  N  N  N   6.147  -1.858  18.859   3.357   0.935   1.669  H1   RY5  23  
RY5  H2   H2   H   0  1  N  N  N   7.740  -1.137  18.445   4.073   1.253   0.071  H2   RY5  24  
RY5  H3   H3   H   0  1  N  N  N   4.700   0.808  20.166   4.599  -0.929  -1.549  H3   RY5  25  
RY5  H4   H4   H   0  1  N  N  N   4.138   2.837  18.599   4.421  -3.535  -1.015  H4   RY5  26  
RY5  H5   H5   H   0  1  N  N  N  12.081   1.527  23.938  -4.453   0.564   1.052  H5   RY5  27  
RY5  H6   H6   H   0  1  N  N  N  12.567  -2.272  22.015  -2.562  -2.327  -1.448  H6   RY5  28  
RY5  H7   H7   H   0  1  N  N  N  10.119  -2.384  21.602  -0.519  -0.960  -1.480  H7   RY5  29  
RY5  H8   H8   H   0  1  N  N  N   9.360   1.952  24.606  -2.980   3.011   1.029  H8   RY5  30  
RY5  H9   H9   H   0  1  N  N  N   9.247   2.450  22.883  -1.924   2.176   2.207  H9   RY5  31  
RY5  H10  H10  H   0  1  N  N  N   7.121   1.449  23.040  -1.182   3.528  -0.406  H10  RY5  32  
RY5  H11  H11  H   0  1  N  N  N   7.615   0.387  24.401  -0.235   3.400   1.113  H11  RY5  33  
RY5  H12  H12  H   0  1  N  N  N   7.339  -2.058  23.387   0.059   2.135  -2.199  H12  RY5  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RY5  O2   N3   SING  Y  N   1  
RY5  O2   C13  SING  Y  N   2  
RY5  N3   C11  DOUB  Y  N   3  
RY5  C13  C12  DOUB  Y  N   4  
RY5  C11  C10  SING  N  N   5  
RY5  C11  C12  SING  Y  N   6  
RY5  C10  N2   SING  N  N   7  
RY5  O3   C14  DOUB  N  N   8  
RY5  N2   C14  SING  N  N   9  
RY5  N2   C9   SING  N  N  10  
RY5  C14  C8   SING  N  N  11  
RY5  O1   C9   DOUB  N  N  12  
RY5  C9   N1   SING  N  N  13  
RY5  C3   C2   DOUB  Y  N  14  
RY5  C3   C4   SING  Y  N  15  
RY5  C2   C1   SING  Y  N  16  
RY5  C8   N1   SING  N  N  17  
RY5  C8   C4   SING  N  N  18  
RY5  C8   C7   SING  N  N  19  
RY5  C4   C5   DOUB  Y  N  20  
RY5  C1   CL1  SING  N  N  21  
RY5  C1   C15  DOUB  Y  N  22  
RY5  C5   C15  SING  Y  N  23  
RY5  C5   C6   SING  N  N  24  
RY5  C7   C6   SING  N  N  25  
RY5  C10  H1   SING  N  N  26  
RY5  C10  H2   SING  N  N  27  
RY5  C12  H3   SING  N  N  28  
RY5  C13  H4   SING  N  N  29  
RY5  C15  H5   SING  N  N  30  
RY5  C2   H6   SING  N  N  31  
RY5  C3   H7   SING  N  N  32  
RY5  C6   H8   SING  N  N  33  
RY5  C6   H9   SING  N  N  34  
RY5  C7   H10  SING  N  N  35  
RY5  C7   H11  SING  N  N  36  
RY5  N1   H12  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RY5  InChI             InChI                 1.03   "InChI=1S/C15H12ClN3O3/c16-10-1-2-12-9(7-10)3-5-15(12)13(20)19(14(21)17-15)8-11-4-6-22-18-11/h1-2,4,6-7H,3,5,8H2,(H,17,21)/t15-/m0/s1"  
RY5  InChIKey          InChI                 1.03   BIZQWNOTOCHPKD-HNNXBMFYSA-N  
RY5  SMILES_CANONICAL  CACTVS                3.385  "Clc1ccc2c(CC[C@]23NC(=O)N(Cc4ccon4)C3=O)c1"  
RY5  SMILES            CACTVS                3.385  "Clc1ccc2c(CC[C]23NC(=O)N(Cc4ccon4)C3=O)c1"  
RY5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc2c(cc1Cl)CC[C@@]23C(=O)N(C(=O)N3)Cc4ccon4"  
RY5  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc2c(cc1Cl)CCC23C(=O)N(C(=O)N3)Cc4ccon4"  
#
_pdbx_chem_comp_identifier.comp_id          RY5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(3~{S})-6-chloranyl-3'-(1,2-oxazol-3-ylmethyl)spiro[1,2-dihydroindene-3,5'-imidazolidine]-2',4'-dione"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RY5  "Create component"  2020-11-02  PDBE  
RY5  "Initial release"   2022-02-23  RCSB  
##
