data_RN5
#

_chem_comp.id                                   RN5
_chem_comp.name                                 "4-{(2S, 4R)-1-acetyl-4-[(1-benzothiophen-6-yl)amino]-2-methyl-1,2,3,4-tetrahydroquinolin-6-yl}benzoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H24 N2 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "4-[(2~{S},4~{R})-4-(1-benzothiophen-6-ylamino)-1-ethanoyl-2-methyl-3,4-dihydro-2~{H}-quinolin-6-yl]benzoic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-09
_chem_comp.pdbx_modified_date                   2021-10-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       456.556
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RN5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AMH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RN5  N1   N1   N  0  1  N  N  N  21.590  70.857  50.039  -4.459   0.458   0.151  N1   RN5   1  
RN5  C7   C1   C  0  1  Y  N  N  18.880  76.326  54.601   2.425  -3.144   0.900  C7   RN5   2  
RN5  C8   C2   C  0  1  Y  N  N  18.816  77.728  54.879   3.780  -3.557   1.234  C8   RN5   3  
RN5  C9   C3   C  0  1  Y  N  N  19.724  78.437  54.193   4.428  -4.169   0.263  C9   RN5   4  
RN5  O1   O1   O  0  1  N  N  N  27.007  73.152  58.953   5.817   2.890  -0.086  O1   RN5   5  
RN5  C1   C4   C  0  1  N  N  S  20.189  70.414  50.152  -4.740  -0.935   0.523  C1   RN5   6  
RN5  C5   C5   C  0  1  Y  N  N  20.117  74.733  53.245   0.817  -3.176  -0.906  C5   RN5   7  
RN5  C6   C6   C  0  1  Y  N  N  19.871  76.031  53.669   2.084  -3.495  -0.410  C6   RN5   8  
RN5  C4   C7   C  0  1  Y  N  N  19.343  73.700  53.762  -0.095  -2.516  -0.106  C4   RN5   9  
RN5  C3   C8   C  0  1  N  N  R  20.246  72.012  52.182  -2.330  -1.498   0.242  C3   RN5  10  
RN5  C2   C9   C  0  1  N  N  N  19.648  70.732  51.554  -3.746  -1.831  -0.228  C2   RN5  11  
RN5  N    N2   N  0  1  N  N  N  19.441  72.401  53.325  -1.362  -2.198  -0.606  N    RN5  12  
RN5  C    C10  C  0  1  N  N  N  20.077  68.937  49.759  -6.171  -1.300   0.122  C    RN5  13  
RN5  O    O2   O  0  1  N  N  N  26.375  71.085  59.482   5.151   5.006  -0.179  O    RN5  14  
RN5  C10  C11  C  0  1  Y  N  N  18.170  75.258  55.140   1.473  -2.475   1.698  C10  RN5  15  
RN5  C11  C12  C  0  1  Y  N  N  18.415  73.961  54.746   0.244  -2.171   1.201  C11  RN5  16  
RN5  C12  C13  C  0  1  Y  N  N  21.715  71.671  52.308  -2.081  -0.014   0.158  C12  RN5  17  
RN5  C13  C14  C  0  1  Y  N  N  22.335  71.004  51.249  -3.129   0.895   0.119  C13  RN5  18  
RN5  C14  C15  C  0  1  Y  N  N  23.626  70.511  51.396  -2.869   2.260   0.047  C14  RN5  19  
RN5  C15  C16  C  0  1  Y  N  N  24.290  70.696  52.597  -1.571   2.718   0.011  C15  RN5  20  
RN5  C16  C17  C  0  1  Y  N  N  23.702  71.392  53.654  -0.514   1.808   0.047  C16  RN5  21  
RN5  C17  C18  C  0  1  Y  N  N  22.412  71.881  53.487  -0.777   0.442   0.121  C17  RN5  22  
RN5  C18  C19  C  0  1  Y  N  N  24.418  71.602  54.934   0.885   2.293   0.006  C18  RN5  23  
RN5  C19  C20  C  0  1  Y  N  N  23.798  72.230  56.010   1.941   1.381   0.036  C19  RN5  24  
RN5  C20  C21  C  0  1  Y  N  N  24.455  72.406  57.212   3.241   1.830  -0.002  C20  RN5  25  
RN5  C21  C22  C  0  1  Y  N  N  25.747  71.941  57.382   3.504   3.201  -0.071  C21  RN5  26  
RN5  C22  C23  C  0  1  Y  N  N  26.378  71.322  56.314   2.446   4.114  -0.101  C22  RN5  27  
RN5  C23  C24  C  0  1  Y  N  N  25.723  71.160  55.107   1.147   3.662  -0.068  C23  RN5  28  
RN5  C24  C25  C  0  1  N  N  N  26.436  72.072  58.710   4.898   3.684  -0.112  C24  RN5  29  
RN5  C25  C26  C  0  1  N  N  N  22.062  71.094  48.779  -5.464   1.300  -0.160  C25  RN5  30  
RN5  C26  C27  C  0  1  N  N  N  23.445  71.659  48.655  -6.683   0.784  -0.881  C26  RN5  31  
RN5  O2   O3   O  0  1  N  N  N  21.392  70.793  47.812  -5.388   2.472   0.141  O2   RN5  32  
RN5  S    S1   S  0  1  Y  N  N  20.715  77.467  53.174   3.441  -4.307  -1.179  S    RN5  33  
RN5  H9   H1   H  0  1  N  N  N  18.111  78.169  55.568   4.220  -3.376   2.203  H9   RN5  34  
RN5  H10  H2   H  0  1  N  N  N  19.823  79.509  54.272   5.439  -4.539   0.346  H10  RN5  35  
RN5  H    H3   H  0  1  N  N  N  19.590  70.991  49.432  -4.613  -1.063   1.598  H    RN5  36  
RN5  H8   H4   H  0  1  N  N  N  20.896  74.529  52.526   0.550  -3.447  -1.917  H8   RN5  37  
RN5  H1   H5   H  0  1  N  N  N  20.162  72.805  51.425  -2.207  -1.826   1.274  H1   RN5  38  
RN5  H5   H6   H  0  1  N  N  N  18.557  70.858  51.484  -3.964  -2.877  -0.015  H5   RN5  39  
RN5  H6   H7   H  0  1  N  N  N  19.877  69.883  52.214  -3.828  -1.648  -1.299  H6   RN5  40  
RN5  H7   H8   H  0  1  N  N  N  18.508  72.109  53.117  -1.600  -2.442  -1.514  H7   RN5  41  
RN5  H3   H9   H  0  1  N  N  N  19.030  68.612  49.845  -6.291  -1.172  -0.953  H3   RN5  42  
RN5  H2   H10  H  0  1  N  N  N  20.417  68.807  48.721  -6.369  -2.338   0.389  H2   RN5  43  
RN5  H4   H11  H  0  1  N  N  N  20.705  68.331  50.429  -6.872  -0.650   0.646  H4   RN5  44  
RN5  H23  H12  H  0  1  N  N  N  26.834  71.285  60.289   6.080   5.275  -0.203  H23  RN5  45  
RN5  H11  H13  H  0  1  N  N  N  17.410  75.450  55.883   1.722  -2.202   2.713  H11  RN5  46  
RN5  H12  H14  H  0  1  N  N  N  17.878  73.147  55.210  -0.473  -1.654   1.822  H12  RN5  47  
RN5  H13  H15  H  0  1  N  N  N  24.107  69.989  50.582  -3.689   2.964   0.019  H13  RN5  48  
RN5  H14  H16  H  0  1  N  N  N  25.285  70.293  52.718  -1.371   3.778  -0.044  H14  RN5  49  
RN5  H15  H17  H  0  1  N  N  N  21.945  72.434  54.289   0.040  -0.263   0.148  H15  RN5  50  
RN5  H16  H18  H  0  1  N  N  N  22.784  72.586  55.903   1.737   0.322   0.090  H16  RN5  51  
RN5  H17  H19  H  0  1  N  N  N  23.956  72.911  58.026   4.057   1.124   0.021  H17  RN5  52  
RN5  H18  H20  H  0  1  N  N  N  27.390  70.963  56.426   2.648   5.174  -0.155  H18  RN5  53  
RN5  H19  H21  H  0  1  N  N  N  26.235  70.682  54.285   0.329   4.367  -0.095  H19  RN5  54  
RN5  H22  H22  H  0  1  N  N  N  23.714  71.741  47.592  -7.366   0.332  -0.163  H22  RN5  55  
RN5  H20  H23  H  0  1  N  N  N  23.477  72.656  49.119  -7.182   1.611  -1.387  H20  RN5  56  
RN5  H21  H24  H  0  1  N  N  N  24.159  70.995  49.163  -6.381   0.038  -1.616  H21  RN5  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RN5  O2   C25  DOUB  N  N   1  
RN5  C26  C25  SING  N  N   2  
RN5  C25  N1   SING  N  N   3  
RN5  C    C1   SING  N  N   4  
RN5  N1   C1   SING  N  N   5  
RN5  N1   C13  SING  N  N   6  
RN5  C1   C2   SING  N  N   7  
RN5  C13  C14  DOUB  Y  N   8  
RN5  C13  C12  SING  Y  N   9  
RN5  C14  C15  SING  Y  N  10  
RN5  C2   C3   SING  N  N  11  
RN5  C3   C12  SING  N  N  12  
RN5  C3   N    SING  N  N  13  
RN5  C12  C17  DOUB  Y  N  14  
RN5  C15  C16  DOUB  Y  N  15  
RN5  S    C6   SING  Y  N  16  
RN5  S    C9   SING  Y  N  17  
RN5  C5   C6   DOUB  Y  N  18  
RN5  C5   C4   SING  Y  N  19  
RN5  N    C4   SING  N  N  20  
RN5  C17  C16  SING  Y  N  21  
RN5  C16  C18  SING  N  N  22  
RN5  C6   C7   SING  Y  N  23  
RN5  C4   C11  DOUB  Y  N  24  
RN5  C9   C8   DOUB  Y  N  25  
RN5  C7   C8   SING  Y  N  26  
RN5  C7   C10  DOUB  Y  N  27  
RN5  C11  C10  SING  Y  N  28  
RN5  C18  C23  DOUB  Y  N  29  
RN5  C18  C19  SING  Y  N  30  
RN5  C23  C22  SING  Y  N  31  
RN5  C19  C20  DOUB  Y  N  32  
RN5  C22  C21  DOUB  Y  N  33  
RN5  C20  C21  SING  Y  N  34  
RN5  C21  C24  SING  N  N  35  
RN5  C24  O1   DOUB  N  N  36  
RN5  C24  O    SING  N  N  37  
RN5  C8   H9   SING  N  N  38  
RN5  C9   H10  SING  N  N  39  
RN5  C1   H    SING  N  N  40  
RN5  C5   H8   SING  N  N  41  
RN5  C3   H1   SING  N  N  42  
RN5  C2   H5   SING  N  N  43  
RN5  C2   H6   SING  N  N  44  
RN5  N    H7   SING  N  N  45  
RN5  C    H3   SING  N  N  46  
RN5  C    H2   SING  N  N  47  
RN5  C    H4   SING  N  N  48  
RN5  O    H23  SING  N  N  49  
RN5  C10  H11  SING  N  N  50  
RN5  C11  H12  SING  N  N  51  
RN5  C14  H13  SING  N  N  52  
RN5  C15  H14  SING  N  N  53  
RN5  C17  H15  SING  N  N  54  
RN5  C19  H16  SING  N  N  55  
RN5  C20  H17  SING  N  N  56  
RN5  C22  H18  SING  N  N  57  
RN5  C23  H19  SING  N  N  58  
RN5  C26  H22  SING  N  N  59  
RN5  C26  H20  SING  N  N  60  
RN5  C26  H21  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RN5  InChI             InChI                 1.03   "InChI=1S/C27H24N2O3S/c1-16-13-24(28-22-9-7-19-11-12-33-26(19)15-22)23-14-21(8-10-25(23)29(16)17(2)30)18-3-5-20(6-4-18)27(31)32/h3-12,14-16,24,28H,13H2,1-2H3,(H,31,32)/t16-,24+/m0/s1"  
RN5  InChIKey          InChI                 1.03   PSXHCEJOKMTHEO-UPCLLVRISA-N  
RN5  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1C[C@@H](Nc2ccc3ccsc3c2)c4cc(ccc4N1C(C)=O)c5ccc(cc5)C(O)=O"  
RN5  SMILES            CACTVS                3.385  "C[CH]1C[CH](Nc2ccc3ccsc3c2)c4cc(ccc4N1C(C)=O)c5ccc(cc5)C(O)=O"  
RN5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1C[C@H](c2cc(ccc2N1C(=O)C)c3ccc(cc3)C(=O)O)Nc4ccc5ccsc5c4"  
RN5  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CC(c2cc(ccc2N1C(=O)C)c3ccc(cc3)C(=O)O)Nc4ccc5ccsc5c4"  
#
_pdbx_chem_comp_identifier.comp_id          RN5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-[(2~{S},4~{R})-4-(1-benzothiophen-6-ylamino)-1-ethanoyl-2-methyl-3,4-dihydro-2~{H}-quinolin-6-yl]benzoic acid"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RN5
_pdbx_chem_comp_synonyms.name        "4-[(2~{S},4~{R})-4-(1-benzothiophen-6-ylamino)-1-ethanoyl-2-methyl-3,4-dihydro-2~{H}-quinolin-6-yl]benzoic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RN5  "Create component"  2020-10-09  PDBE  
RN5  "Modify name"       2020-10-23  PDBE  
RN5  "Modify synonyms"   2021-03-13  RCSB  
RN5  "Initial release"   2021-10-20  RCSB  
##
