data_RH5
# 
_chem_comp.id                                    RH5 
_chem_comp.name                                  "4-[(3~{R})-1-oxidanyl-3,4-dihydro-2,1-benzoxaborinin-3-yl]-2-(pyridin-3-ylmethoxy)benzenecarboximidamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H20 B N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-08-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        373.213 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RH5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6SKB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RH5 C10 C1  C 0 1 Y N N N N N -34.843 -23.216 -22.514 0.891  2.302  -0.141 C10 RH5 1  
RH5 C12 C2  C 0 1 Y N N N N N -35.094 -23.038 -21.159 0.866  0.936  0.086  C12 RH5 2  
RH5 C13 C3  C 0 1 Y N N N N N -35.138 -24.157 -20.332 -0.336 0.257  0.120  C13 RH5 3  
RH5 C15 C4  C 0 1 Y N N N N N -34.917 -25.425 -20.849 -1.527 0.941  -0.073 C15 RH5 4  
RH5 C17 C5  C 0 1 N N N N N N -34.840 -26.433 -18.629 -2.653 -1.134 0.198  C17 RH5 5  
RH5 C20 C6  C 0 1 Y N N N N N -33.564 -25.790 -18.144 -4.050 -1.699 0.199  C20 RH5 6  
RH5 C21 C7  C 0 1 Y N N N N N -33.511 -25.127 -16.926 -4.622 -2.159 -0.977 C21 RH5 7  
RH5 C28 C8  C 0 1 Y N N N N N -32.392 -25.845 -18.880 -4.775 -1.771 1.374  C28 RH5 8  
RH5 N01 N1  N 0 1 N N N N N N -34.835 -27.162 -24.127 -3.896 2.412  -0.598 N01 RH5 9  
RH5 C04 C9  C 0 1 N N N N N N -34.420 -26.934 -22.857 -2.769 3.060  -0.510 C04 RH5 10 
RH5 N05 N2  N 0 1 N N N N N N -33.824 -27.890 -22.228 -2.755 4.435  -0.611 N05 RH5 11 
RH5 C07 C10 C 0 1 Y N N N N N -34.652 -25.611 -22.218 -1.505 2.321  -0.303 C07 RH5 12 
RH5 C08 C11 C 0 1 Y N N N N N -34.621 -24.475 -23.039 -0.285 2.997  -0.330 C08 RH5 13 
RH5 O16 O1  O 0 1 N N N N N N -34.924 -26.559 -20.063 -2.708 0.274  -0.041 O16 RH5 14 
RH5 C23 C12 C 0 1 Y N N N N N -32.334 -24.529 -16.511 -5.910 -2.670 -0.928 C23 RH5 15 
RH5 C25 C13 C 0 1 Y N N N N N -31.225 -24.635 -17.325 -6.576 -2.705 0.282  C25 RH5 16 
RH5 N27 N3  N 0 1 Y N N N N N -31.237 -25.278 -18.503 -5.997 -2.265 1.383  N27 RH5 17 
RH5 C30 C14 C 0 1 N N R N N N -35.327 -21.663 -20.575 2.156  0.188  0.297  C30 RH5 18 
RH5 C32 C15 C 0 1 N N N N N N -34.807 -21.508 -19.153 2.809  -0.084 -1.055 C32 RH5 19 
RH5 C35 C16 C 0 1 Y N N N N N -35.066 -20.113 -18.638 4.149  -0.748 -0.888 C35 RH5 20 
RH5 C36 C17 C 0 1 Y N N N N N -35.262 -19.871 -17.278 4.689  -1.497 -1.914 C36 RH5 21 
RH5 C38 C18 C 0 1 Y N N N N N -35.488 -18.585 -16.812 5.923  -2.102 -1.754 C38 RH5 22 
RH5 C40 C19 C 0 1 Y N N N N N -35.525 -17.526 -17.698 6.628  -1.962 -0.572 C40 RH5 23 
RH5 C42 C20 C 0 1 Y N N N N N -35.331 -17.747 -19.055 6.098  -1.215 0.463  C42 RH5 24 
RH5 C44 C21 C 0 1 Y N N N N N -35.092 -19.036 -19.560 4.859  -0.610 0.305  C44 RH5 25 
RH5 B45 B1  B 0 1 N N N N N N -34.804 -19.318 -21.048 4.216  0.241  1.465  B45 RH5 26 
RH5 O46 O2  O 0 1 N N N N N N -34.150 -18.435 -21.839 4.778  0.285  2.768  O46 RH5 27 
RH5 O48 O3  O 0 1 N N N N N N -34.666 -20.645 -21.375 3.029  0.969  1.123  O48 RH5 28 
RH5 H1  H1  H 0 1 N N N N N N -34.821 -22.356 -23.168 1.835  2.826  -0.166 H1  RH5 29 
RH5 H2  H2  H 0 1 N N N N N N -35.346 -24.037 -19.279 -0.348 -0.809 0.297  H2  RH5 30 
RH5 H3  H3  H 0 1 N N N N N N -35.688 -25.822 -18.285 -2.184 -1.321 1.164  H3  RH5 31 
RH5 H4  H4  H 0 1 N N N N N N -34.910 -27.439 -18.189 -2.068 -1.613 -0.588 H4  RH5 32 
RH5 H5  H5  H 0 1 N N N N N N -34.390 -25.078 -16.301 -4.078 -2.119 -1.909 H5  RH5 33 
RH5 H6  H6  H 0 1 N N N N N N -32.410 -26.379 -19.818 -4.334 -1.419 2.295  H6  RH5 34 
RH5 H7  H7  H 0 1 N N N N N N -35.283 -26.361 -24.524 -3.899 1.442  -0.594 H7  RH5 35 
RH5 H8  H8  H 0 1 N N N N N N -33.507 -27.750 -21.290 -3.584 4.919  -0.747 H8  RH5 36 
RH5 H9  H9  H 0 1 N N N N N N -33.679 -28.771 -22.678 -1.916 4.917  -0.545 H9  RH5 37 
RH5 H10 H10 H 0 1 N N N N N N -34.421 -24.585 -24.095 -0.261 4.062  -0.506 H10 RH5 38 
RH5 H11 H11 H 0 1 N N N N N N -32.285 -23.993 -15.574 -6.387 -3.037 -1.825 H11 RH5 39 
RH5 H12 H12 H 0 1 N N N N N N -30.302 -24.178 -16.998 -7.579 -3.102 0.329  H12 RH5 40 
RH5 H13 H13 H 0 1 N N N N N N -36.410 -21.469 -20.568 1.947  -0.760 0.793  H13 RH5 41 
RH5 H14 H14 H 0 1 N N N N N N -35.316 -22.234 -18.502 2.160  -0.734 -1.642 H14 RH5 42 
RH5 H15 H15 H 0 1 N N N N N N -33.724 -21.702 -19.142 2.941  0.860  -1.584 H15 RH5 43 
RH5 H16 H16 H 0 1 N N N N N N -35.237 -20.695 -16.580 4.147  -1.612 -2.841 H16 RH5 44 
RH5 H17 H17 H 0 1 N N N N N N -35.635 -18.411 -15.756 6.340  -2.688 -2.560 H17 RH5 45 
RH5 H18 H18 H 0 1 N N N N N N -35.705 -16.525 -17.335 7.591  -2.437 -0.458 H18 RH5 46 
RH5 H19 H19 H 0 1 N N N N N N -35.365 -16.910 -19.737 6.644  -1.103 1.388  H19 RH5 47 
RH5 H20 H20 H 0 1 N N N N N N -33.683 -18.905 -22.520 4.289  0.844  3.388  H20 RH5 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RH5 N01 C04 DOUB N N 1  
RH5 C08 C10 DOUB Y N 2  
RH5 C08 C07 SING Y N 3  
RH5 C04 N05 SING N N 4  
RH5 C04 C07 SING N N 5  
RH5 C10 C12 SING Y N 6  
RH5 C07 C15 DOUB Y N 7  
RH5 O46 B45 SING N N 8  
RH5 O48 B45 SING N N 9  
RH5 O48 C30 SING N N 10 
RH5 C12 C30 SING N N 11 
RH5 C12 C13 DOUB Y N 12 
RH5 B45 C44 SING N N 13 
RH5 C15 C13 SING Y N 14 
RH5 C15 O16 SING N N 15 
RH5 C30 C32 SING N N 16 
RH5 O16 C17 SING N N 17 
RH5 C44 C42 DOUB Y N 18 
RH5 C44 C35 SING Y N 19 
RH5 C32 C35 SING N N 20 
RH5 C42 C40 SING Y N 21 
RH5 C28 N27 DOUB Y N 22 
RH5 C28 C20 SING Y N 23 
RH5 C35 C36 DOUB Y N 24 
RH5 C17 C20 SING N N 25 
RH5 N27 C25 SING Y N 26 
RH5 C20 C21 DOUB Y N 27 
RH5 C40 C38 DOUB Y N 28 
RH5 C25 C23 DOUB Y N 29 
RH5 C36 C38 SING Y N 30 
RH5 C21 C23 SING Y N 31 
RH5 C10 H1  SING N N 32 
RH5 C13 H2  SING N N 33 
RH5 C17 H3  SING N N 34 
RH5 C17 H4  SING N N 35 
RH5 C21 H5  SING N N 36 
RH5 C28 H6  SING N N 37 
RH5 N01 H7  SING N N 38 
RH5 N05 H8  SING N N 39 
RH5 N05 H9  SING N N 40 
RH5 C08 H10 SING N N 41 
RH5 C23 H11 SING N N 42 
RH5 C25 H12 SING N N 43 
RH5 C30 H13 SING N N 44 
RH5 C32 H14 SING N N 45 
RH5 C32 H15 SING N N 46 
RH5 C36 H16 SING N N 47 
RH5 C38 H17 SING N N 48 
RH5 C40 H18 SING N N 49 
RH5 C42 H19 SING N N 50 
RH5 O46 H20 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RH5 InChI            InChI                1.03  "InChI=1S/C21H20BN3O3/c23-21(24)17-8-7-16(11-20(17)27-13-14-4-3-9-25-12-14)19-10-15-5-1-2-6-18(15)22(26)28-19/h1-9,11-12,19,26H,10,13H2,(H3,23,24)/t19-/m1/s1" 
RH5 InChIKey         InChI                1.03  YENXZRUMZHNJKP-LJQANCHMSA-N                                                                                                                                    
RH5 SMILES_CANONICAL CACTVS               3.385 "NC(=N)c1ccc(cc1OCc2cccnc2)[C@H]3Cc4ccccc4B(O)O3"                                                                                                              
RH5 SMILES           CACTVS               3.385 "NC(=N)c1ccc(cc1OCc2cccnc2)[CH]3Cc4ccccc4B(O)O3"                                                                                                               
RH5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/c1ccc(cc1OCc2cccnc2)[C@H]3Cc4ccccc4B(O3)O)\N"                                                                                                        
RH5 SMILES           "OpenEye OEToolkits" 2.0.7 "B1(c2ccccc2CC(O1)c3ccc(c(c3)OCc4cccnc4)C(=N)N)O"                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           RH5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[(3~{R})-1-oxidanyl-3,4-dihydro-2,1-benzoxaborinin-3-yl]-2-(pyridin-3-ylmethoxy)benzenecarboximidamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RH5 "Create component" 2019-08-16 EBI  
RH5 "Initial release"  2019-09-25 RCSB 
RH5 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            RH5 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B45 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
