data_RB5
#

_chem_comp.id                                   RB5
_chem_comp.name                                 D-ribose
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-06-21
_chem_comp.pdbx_modified_date                   2020-06-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       150.130
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RB5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3NI4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RB5  C5   C1   C  0  1  N  N  N  17.374  -13.470  -14.120  -2.388   0.491  -0.443  C1   RB5   1  
RB5  O5   O1   O  0  1  N  N  N  18.424  -12.530  -13.876  -3.599  -0.065   0.073  O1   RB5   2  
RB5  C4   C2   C  0  1  N  N  R  17.878  -14.855  -13.712  -1.191  -0.142   0.271  C2   RB5   3  
RB5  O4   O2   O  0  1  N  N  N  19.049  -14.649  -12.864  -1.132  -1.535  -0.043  O2   RB5   4  
RB5  C3   C3   C  0  1  N  N  R  16.767  -15.796  -13.069   0.098   0.540  -0.192  C3   RB5   5  
RB5  O3   O3   O  0  1  N  N  N  15.488  -15.546  -13.699   0.038   1.933   0.122  O3   RB5   6  
RB5  C2   C4   C  0  1  N  N  R  17.047  -17.365  -13.104   1.294  -0.092   0.521  C4   RB5   7  
RB5  O2   O4   O  0  1  N  N  N  18.029  -17.618  -14.110   1.354  -1.485   0.208  O4   RB5   8  
RB5  C1   C5   C  0  1  N  N  N  17.364  -18.137  -11.714   2.564   0.580   0.066  C5   RB5   9  
RB5  O1   O5   O  0  1  N  N  N  18.148  -19.436  -11.788   3.430  -0.067  -0.472  O5   RB5  10  
RB5  H51  H1   H  0  1  N  N  N  16.486  -13.204  -13.528  -2.322   0.288  -1.512  H1   RB5  11  
RB5  H52  H1A  H  0  1  N  N  N  17.107  -13.466  -15.187  -2.382   1.568  -0.276  H1A  RB5  12  
RB5  HO5  HO1  H  0  1  N  N  N  18.134  -11.660  -14.122  -4.400   0.291  -0.334  HO1  RB5  13  
RB5  H4   H2   H  0  1  N  N  N  18.160  -15.425  -14.610  -1.302  -0.017   1.348  H2   RB5  14  
RB5  HO4  HO2  H  0  1  N  N  N  19.393  -15.491  -12.589  -1.033  -1.722  -0.987  HO2  RB5  15  
RB5  H3   H3   H  0  1  N  N  N  16.779  -15.523  -12.003   0.209   0.415  -1.269  H3   RB5  16  
RB5  HO3  HO3  H  0  1  N  N  N  14.828  -16.110  -13.312  -0.061   2.120   1.065  HO3  RB5  17  
RB5  H2   H4   H  0  1  N  N  N  16.075  -17.820  -13.345   1.183   0.033   1.599  H4   RB5  18  
RB5  HO2  HO4  H  0  1  N  N  N  18.569  -18.354  -13.848   1.453  -1.672  -0.736  HO4  RB5  19  
RB5  H1   H5   H  0  1  N  N  N  17.029  -17.741  -10.767   2.699   1.640   0.220  H5   RB5  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RB5  C5  O5   SING  N  N   1  
RB5  C5  C4   SING  N  N   2  
RB5  C4  O4   SING  N  N   3  
RB5  C4  C3   SING  N  N   4  
RB5  C3  O3   SING  N  N   5  
RB5  C3  C2   SING  N  N   6  
RB5  C2  O2   SING  N  N   7  
RB5  C2  C1   SING  N  N   8  
RB5  C1  O1   DOUB  N  N   9  
RB5  C5  H51  SING  N  N  10  
RB5  C5  H52  SING  N  N  11  
RB5  O5  HO5  SING  N  N  12  
RB5  C4  H4   SING  N  N  13  
RB5  O4  HO4  SING  N  N  14  
RB5  C3  H3   SING  N  N  15  
RB5  O3  HO3  SING  N  N  16  
RB5  C2  H2   SING  N  N  17  
RB5  O2  HO2  SING  N  N  18  
RB5  C1  H1   SING  N  N  19  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RB5  SMILES            ACDLabs               12.01  "O=CC(O)C(O)C(O)CO"  
RB5  SMILES_CANONICAL  CACTVS                3.370  "OC[C@@H](O)[C@@H](O)[C@@H](O)C=O"  
RB5  SMILES            CACTVS                3.370  "OC[CH](O)[CH](O)[CH](O)C=O"  
RB5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C([C@H]([C@H]([C@H](C=O)O)O)O)O"  
RB5  SMILES            "OpenEye OEToolkits"  1.7.0  "C(C(C(C(C=O)O)O)O)O"  
RB5  InChI             InChI                 1.03   "InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h1,3-5,7-10H,2H2/t3-,4+,5-/m0/s1"  
RB5  InChIKey          InChI                 1.03   PYMYPHUHKUWMLA-LMVFSUKVSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RB5  "SYSTEMATIC NAME"  ACDLabs               12.01  D-ribose  
RB5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(2R,3R,4R)-2,3,4,5-tetrahydroxypentanal"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RB5  "Create component"   2010-06-21  PDBJ  
RB5  "Modify descriptor"  2011-06-04  RCSB  
RB5  "Modify atom id"     2020-06-24  RCSB  
##
