data_OO5
#

_chem_comp.id                                   OO5
_chem_comp.name                                 "[(2~{R},3~{S},4~{R},5~{R})-5-[6-chloranyl-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxymethylphosphonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H23 Cl N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-23
_chem_comp.pdbx_modified_date                   2021-01-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       463.810
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    OO5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YE2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OO5  N1   N1    N   0  1  Y  N  N  26.574  31.444   0.108  -4.069  -0.612   0.599  N1   OO5   1  
OO5  N2   N3    N   0  1  Y  N  N  24.805  31.412   1.729  -2.092  -1.816   0.617  N2   OO5   2  
OO5  C1   C4    C   0  1  Y  N  N  24.559  30.156   1.332  -1.393  -0.759   0.206  C1   OO5   3  
OO5  C2   C5    C   0  1  Y  N  N  25.236  29.466   0.335  -2.069   0.454  -0.025  C2   OO5   4  
OO5  C3   C6    C   0  1  Y  N  N  26.269  30.199  -0.293  -3.461   0.495   0.189  C3   OO5   5  
OO5  C4   C17   C   0  1  Y  N  N  24.620  28.191   0.304  -1.102   1.393  -0.446  C4   OO5   6  
OO5  C5   C26   C   0  1  N  N  N  28.291  29.362  -1.468  -5.622   1.680   0.205  C5   OO5   7  
OO5  C6   C28   C   0  1  N  N  N  28.065  27.616  -3.036  -7.627   2.145  -1.105  C6   OO5   8  
OO5  O1   O3*   O   0  1  N  N  N  19.094  28.781   1.858   2.941  -3.873  -0.942  O1   OO5   9  
OO5  C7   C3*   C   0  1  N  N  S  20.502  28.692   2.020   2.893  -2.457  -1.129  C7   OO5  10  
OO5  C8   C2*   C   0  1  N  N  R  21.244  30.022   2.003   1.438  -1.993  -1.379  C8   OO5  11  
OO5  O2   O2*   O   0  1  N  N  N  20.581  31.053   2.711   0.623  -3.082  -1.819  O2   OO5  12  
OO5  C9   C4*   C   0  1  N  N  R  20.886  28.127   3.380   3.306  -1.728   0.164  C9   OO5  13  
OO5  C10  C5*   C   0  1  N  N  N  20.794  26.623   3.478   4.538  -0.860  -0.099  C10  OO5  14  
OO5  O3   O5*   O   0  1  N  N  N  20.607  26.259   4.833   4.982  -0.279   1.129  O3   OO5  15  
OO5  C11  C08   C   0  1  N  N  N  20.435  24.857   5.006   6.134   0.555   0.994  C11  OO5  16  
OO5  P1   P09   P   0  1  N  N  N  21.958  23.955   4.680   5.651   2.140   0.234  P1   OO5  17  
OO5  O4   O10   O   0  1  N  N  N  21.969  22.826   5.727   5.013   1.867  -1.218  O4   OO5  18  
OO5  O5   O11   O   0  1  N  N  N  22.086  23.387   3.298   4.652   2.814   1.093  O5   OO5  19  
OO5  O6   O12   O   0  1  N  N  N  23.094  24.934   5.059   6.949   3.080   0.082  O6   OO5  20  
OO5  O7   O4*   O   0  1  N  N  N  22.244  28.576   3.598   2.199  -0.900   0.559  O7   OO5  21  
OO5  C12  C1*   C   0  1  N  N  R  22.537  29.657   2.726   1.004  -1.513   0.030  C12  OO5  22  
OO5  N3   N9    N   0  1  Y  N  N  23.607  29.322   1.818  -0.078  -0.530  -0.071  N3   OO5  23  
OO5  N4   N16   N   0  1  Y  N  N  23.657  28.103   1.197   0.060   0.805  -0.469  N4   OO5  24  
OO5  C13  C2    C   0  1  Y  N  N  25.807  31.960   1.056  -3.392  -1.730   0.803  C13  OO5  25  
OO5  CL1  CL22  CL  0  0  N  N  N  26.088  33.639   1.401  -4.253  -3.139   1.339  CL1  OO5  26  
OO5  N5   N6    N   0  1  N  N  N  26.882  29.698  -1.366  -4.175   1.658  -0.023  N5   OO5  27  
OO5  C14  C27   C   0  1  N  N  N  28.630  28.990  -2.888  -6.365   1.247  -1.076  C14  OO5  28  
OO5  C15  C29   C   0  1  N  N  N  28.166  27.000  -1.635  -7.093   3.502  -0.583  C15  OO5  29  
OO5  C16  C30   C   0  1  N  N  N  28.596  28.093  -0.706  -6.085   3.113   0.518  C16  OO5  30  
OO5  H1   H1    H   0  1  N  N  N  24.904  27.393  -0.366  -1.293   2.424  -0.705  H1   OO5  31  
OO5  H2   H2    H   0  1  N  N  N  28.929  30.187  -1.119  -5.880   1.015   1.029  H2   OO5  32  
OO5  H3   H3    H   0  1  N  N  N  27.016  27.661  -3.365  -8.007   2.245  -2.122  H3   OO5  33  
OO5  H4   H4    H   0  1  N  N  N  28.652  27.031  -3.760  -8.397   1.752  -0.441  H4   OO5  34  
OO5  H5   H5    H   0  1  N  N  N  18.716  27.910   1.881   2.691  -4.382  -1.725  H5   OO5  35  
OO5  H6   H6    H   0  1  N  N  N  20.928  28.044   1.240   3.537  -2.161  -1.957  H6   OO5  36  
OO5  H7   H7    H   0  1  N  N  N  21.463  30.318   0.967   1.408  -1.173  -2.096  H7   OO5  37  
OO5  H8   H8    H   0  1  N  N  N  21.093  31.852   2.662   0.911  -3.475  -2.654  H8   OO5  38  
OO5  H9   H9    H   0  1  N  N  N  20.226  28.570   4.141   3.525  -2.455   0.946  H9   OO5  39  
OO5  H10  H10   H   0  1  N  N  N  19.943  26.266   2.880   5.333  -1.475  -0.519  H10  OO5  40  
OO5  H11  H11   H   0  1  N  N  N  21.723  26.171   3.100   4.281  -0.068  -0.803  H11  OO5  41  
OO5  H12  H12   H   0  1  N  N  N  19.657  24.505   4.313   6.566   0.740   1.977  H12  OO5  42  
OO5  H13  H13   H   0  1  N  N  N  20.119  24.662   6.041   6.870   0.059   0.361  H13  OO5  43  
OO5  H14  H14   H   0  1  N  N  N  22.055  21.988   5.288   5.613   1.426  -1.835  H14  OO5  44  
OO5  H15  H15   H   0  1  N  N  N  23.700  25.014   4.332   6.766   3.943  -0.316  H15  OO5  45  
OO5  H16  H16   H   0  1  N  N  N  22.842  30.528   3.325   0.700  -2.358   0.647  H16  OO5  46  
OO5  H17  H17   H   0  1  N  N  N  26.718  30.363  -2.095  -3.719   2.460  -0.322  H17  OO5  47  
OO5  H18  H18   H   0  1  N  N  N  29.719  28.986  -3.043  -5.748   1.429  -1.956  H18  OO5  48  
OO5  H19  H19   H   0  1  N  N  N  28.161  29.686  -3.599  -6.647   0.196  -1.017  H19  OO5  49  
OO5  H20  H20   H   0  1  N  N  N  27.188  26.604  -1.325  -6.592   4.048  -1.383  H20  OO5  50  
OO5  H21  H21   H   0  1  N  N  N  28.908  26.188  -1.632  -7.905   4.096  -0.164  H21  OO5  51  
OO5  H22  H22   H   0  1  N  N  N  28.025  28.054   0.234  -6.568   3.145   1.495  H22  OO5  52  
OO5  H23  H23   H   0  1  N  N  N  29.671  28.018  -0.485  -5.232   3.793   0.501  H23  OO5  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OO5  C6   C14  SING  N  N   1  
OO5  C6   C15  SING  N  N   2  
OO5  C14  C5   SING  N  N   3  
OO5  C15  C16  SING  N  N   4  
OO5  C5   N5   SING  N  N   5  
OO5  C5   C16  SING  N  N   6  
OO5  N5   C3   SING  N  N   7  
OO5  C3   N1   DOUB  Y  N   8  
OO5  C3   C2   SING  Y  N   9  
OO5  N1   C13  SING  Y  N  10  
OO5  C4   C2   SING  Y  N  11  
OO5  C4   N4   DOUB  Y  N  12  
OO5  C2   C1   DOUB  Y  N  13  
OO5  C13  CL1  SING  N  N  14  
OO5  C13  N2   DOUB  Y  N  15  
OO5  N4   N3   SING  Y  N  16  
OO5  C1   N2   SING  Y  N  17  
OO5  C1   N3   SING  Y  N  18  
OO5  N3   C12  SING  N  N  19  
OO5  O1   C7   SING  N  N  20  
OO5  C8   C7   SING  N  N  21  
OO5  C8   O2   SING  N  N  22  
OO5  C8   C12  SING  N  N  23  
OO5  C7   C9   SING  N  N  24  
OO5  C12  O7   SING  N  N  25  
OO5  O5   P1   DOUB  N  N  26  
OO5  C9   C10  SING  N  N  27  
OO5  C9   O7   SING  N  N  28  
OO5  C10  O3   SING  N  N  29  
OO5  P1   C11  SING  N  N  30  
OO5  P1   O6   SING  N  N  31  
OO5  P1   O4   SING  N  N  32  
OO5  O3   C11  SING  N  N  33  
OO5  C4   H1   SING  N  N  34  
OO5  C5   H2   SING  N  N  35  
OO5  C6   H3   SING  N  N  36  
OO5  C6   H4   SING  N  N  37  
OO5  O1   H5   SING  N  N  38  
OO5  C7   H6   SING  N  N  39  
OO5  C8   H7   SING  N  N  40  
OO5  O2   H8   SING  N  N  41  
OO5  C9   H9   SING  N  N  42  
OO5  C10  H10  SING  N  N  43  
OO5  C10  H11  SING  N  N  44  
OO5  C11  H12  SING  N  N  45  
OO5  C11  H13  SING  N  N  46  
OO5  O4   H14  SING  N  N  47  
OO5  O6   H15  SING  N  N  48  
OO5  C12  H16  SING  N  N  49  
OO5  N5   H17  SING  N  N  50  
OO5  C14  H18  SING  N  N  51  
OO5  C14  H19  SING  N  N  52  
OO5  C15  H20  SING  N  N  53  
OO5  C15  H21  SING  N  N  54  
OO5  C16  H22  SING  N  N  55  
OO5  C16  H23  SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OO5  InChI             InChI                 1.03   "InChI=1S/C16H23ClN5O7P/c17-16-20-13(19-8-3-1-2-4-8)9-5-18-22(14(9)21-16)15-12(24)11(23)10(29-15)6-28-7-30(25,26)27/h5,8,10-12,15,23-24H,1-4,6-7H2,(H,19,20,21)(H2,25,26,27)/t10-,11-,12-,15-/m1/s1"  
OO5  InChIKey          InChI                 1.03   IVHVIBKVJIZKOC-RTWAVKEYSA-N  
OO5  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COC[P](O)(O)=O)n2ncc3c(NC4CCCC4)nc(Cl)nc23"  
OO5  SMILES            CACTVS                3.385  "O[CH]1[CH](O)[CH](O[CH]1COC[P](O)(O)=O)n2ncc3c(NC4CCCC4)nc(Cl)nc23"  
OO5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1c2c(nc(nc2n(n1)[C@H]3[C@@H]([C@@H]([C@H](O3)COCP(=O)(O)O)O)O)Cl)NC4CCCC4"  
OO5  SMILES            "OpenEye OEToolkits"  2.0.7  "c1c2c(nc(nc2n(n1)C3C(C(C(O3)COCP(=O)(O)O)O)O)Cl)NC4CCCC4"  
#
_pdbx_chem_comp_identifier.comp_id          OO5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-[6-chloranyl-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxymethylphosphonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OO5  "Create component"  2020-03-23  PDBE  
OO5  "Initial release"   2021-01-20  RCSB  
##
