data_MM5
# 
_chem_comp.id                                    MM5 
_chem_comp.name                                  "1,1'-[1,4-PHENYLENEBIS(METHYLENE)]BIS[1,4,8,11-TETRAAZACYCLOTETRADECANE]NI(II)" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H48 N8 Ni2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "NICKEL(II)XYLYLBICYCLAM" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-06-19 
_chem_comp.pdbx_modified_date                    2023-09-23 
_chem_comp.pdbx_ambiguous_flag                   Y 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        614.121 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MM5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MM5 C13  C13  C  0 1 N N N 0.606  30.031 1.772 ? ? ? C13  MM5 1  
MM5 N14  N14  N  0 1 N N N -0.251 28.858 1.950 ? ? ? N14  MM5 2  
MM5 C1   C1   C  0 1 N N N -0.088 27.642 1.163 ? ? ? C1   MM5 3  
MM5 NI1  NI1  NI 0 0 N N N -1.686 28.994 3.349 ? ? ? NI1  MM5 4  
MM5 C12  C12  C  0 1 N N N 0.453  31.009 2.961 ? ? ? C12  MM5 5  
MM5 N11  N11  N  0 1 N N N -0.780 30.749 3.711 ? ? ? N11  MM5 6  
MM5 C10  C10  C  0 1 N N N -1.338 31.705 4.666 ? ? ? C10  MM5 7  
MM5 C9   C9   C  0 1 N N N -1.934 30.876 5.805 ? ? ? C9   MM5 8  
MM5 C8   C8   C  0 1 N N N -3.333 30.351 5.494 ? ? ? C8   MM5 9  
MM5 N7   N7   N  0 1 N N N -3.134 29.125 4.735 ? ? ? N7   MM5 10 
MM5 C6   C6   C  0 1 N N N -3.962 27.935 4.921 ? ? ? C6   MM5 11 
MM5 C5   C5   C  0 1 N N N -3.886 27.043 3.663 ? ? ? C5   MM5 12 
MM5 N4   N4   N  0 1 N N N -2.604 27.245 2.988 ? ? ? N4   MM5 13 
MM5 C3   C3   C  0 1 N N N -2.014 26.250 2.099 ? ? ? C3   MM5 14 
MM5 C2   C2   C  0 1 N N N -0.503 26.503 2.098 ? ? ? C2   MM5 15 
MM5 C4   C4   C  0 1 Y N N ?      ?      ?     ? ? ? C4   MM5 16 
MM5 C7   C7   C  0 1 Y N N ?      ?      ?     ? ? ? C7   MM5 17 
MM5 C11  C11  C  0 1 Y N N ?      ?      ?     ? ? ? C11  MM5 18 
MM5 C14  C14  C  0 1 Y N N ?      ?      ?     ? ? ? C14  MM5 19 
MM5 C15  C15  C  0 1 Y N N ?      ?      ?     ? ? ? C15  MM5 20 
MM5 C16  C16  C  0 1 Y N N ?      ?      ?     ? ? ? C16  MM5 21 
MM5 C17  C17  C  0 1 N N N ?      ?      ?     ? ? ? C17  MM5 22 
MM5 N1   N1   N  0 1 N N N ?      ?      ?     ? ? ? N1   MM5 23 
MM5 C18  C18  C  0 1 N N N ?      ?      ?     ? ? ? C18  MM5 24 
MM5 C19  C19  C  0 1 N N N ?      ?      ?     ? ? ? C19  MM5 25 
MM5 N2   N2   N  0 1 N N N ?      ?      ?     ? ? ? N2   MM5 26 
MM5 C20  C20  C  0 1 N N N ?      ?      ?     ? ? ? C20  MM5 27 
MM5 C21  C21  C  0 1 N N N ?      ?      ?     ? ? ? C21  MM5 28 
MM5 C22  C22  C  0 1 N N N ?      ?      ?     ? ? ? C22  MM5 29 
MM5 N3   N3   N  0 1 N N N ?      ?      ?     ? ? ? N3   MM5 30 
MM5 C23  C23  C  0 1 N N N ?      ?      ?     ? ? ? C23  MM5 31 
MM5 C24  C24  C  0 1 N N N ?      ?      ?     ? ? ? C24  MM5 32 
MM5 N5   N5   N  0 1 N N N ?      ?      ?     ? ? ? N5   MM5 33 
MM5 C25  C25  C  0 1 N N N ?      ?      ?     ? ? ? C25  MM5 34 
MM5 C26  C26  C  0 1 N N N ?      ?      ?     ? ? ? C26  MM5 35 
MM5 C27  C27  C  0 1 N N N ?      ?      ?     ? ? ? C27  MM5 36 
MM5 NI2  NI2  NI 0 0 N N N ?      ?      ?     ? ? ? NI2  MM5 37 
MM5 C28  C28  C  0 1 N N N ?      ?      ?     ? ? ? C28  MM5 38 
MM5 H4   H4   H  0 1 N N N ?      ?      ?     ? ? ? H4   MM5 39 
MM5 H7   H7   H  0 1 N N N ?      ?      ?     ? ? ? H7   MM5 40 
MM5 H14  H14  H  0 1 N N N ?      ?      ?     ? ? ? H14  MM5 41 
MM5 H15  H15  H  0 1 N N N ?      ?      ?     ? ? ? H15  MM5 42 
MM5 H171 H171 H  0 0 N N N ?      ?      ?     ? ? ? H171 MM5 43 
MM5 H172 H172 H  0 0 N N N ?      ?      ?     ? ? ? H172 MM5 44 
MM5 H181 H181 H  0 0 N N N ?      ?      ?     ? ? ? H181 MM5 45 
MM5 H182 H182 H  0 0 N N N ?      ?      ?     ? ? ? H182 MM5 46 
MM5 H191 H191 H  0 0 N N N ?      ?      ?     ? ? ? H191 MM5 47 
MM5 H192 H192 H  0 0 N N N ?      ?      ?     ? ? ? H192 MM5 48 
MM5 H201 H201 H  0 0 N N N ?      ?      ?     ? ? ? H201 MM5 49 
MM5 H202 H202 H  0 0 N N N ?      ?      ?     ? ? ? H202 MM5 50 
MM5 H211 H211 H  0 0 N N N ?      ?      ?     ? ? ? H211 MM5 51 
MM5 H212 H212 H  0 0 N N N ?      ?      ?     ? ? ? H212 MM5 52 
MM5 H221 H221 H  0 0 N N N ?      ?      ?     ? ? ? H221 MM5 53 
MM5 H222 H222 H  0 0 N N N ?      ?      ?     ? ? ? H222 MM5 54 
MM5 H231 H231 H  0 0 N N N ?      ?      ?     ? ? ? H231 MM5 55 
MM5 H232 H232 H  0 0 N N N ?      ?      ?     ? ? ? H232 MM5 56 
MM5 H241 H241 H  0 0 N N N ?      ?      ?     ? ? ? H241 MM5 57 
MM5 H242 H242 H  0 0 N N N ?      ?      ?     ? ? ? H242 MM5 58 
MM5 H251 H251 H  0 0 N N N ?      ?      ?     ? ? ? H251 MM5 59 
MM5 H252 H252 H  0 0 N N N ?      ?      ?     ? ? ? H252 MM5 60 
MM5 H261 H261 H  0 0 N N N ?      ?      ?     ? ? ? H261 MM5 61 
MM5 H262 H262 H  0 0 N N N ?      ?      ?     ? ? ? H262 MM5 62 
MM5 H271 H271 H  0 0 N N N ?      ?      ?     ? ? ? H271 MM5 63 
MM5 H272 H272 H  0 0 N N N ?      ?      ?     ? ? ? H272 MM5 64 
MM5 H281 H281 H  0 0 N N N ?      ?      ?     ? ? ? H281 MM5 65 
MM5 H282 H282 H  0 0 N N N ?      ?      ?     ? ? ? H282 MM5 66 
MM5 H51  H51  H  0 1 N N N -3.981 25.987 3.958 ? ? ? H51  MM5 67 
MM5 H52  H52  H  0 1 N N N -4.705 27.308 2.978 ? ? ? H52  MM5 68 
MM5 H61  H61  H  0 1 N N N -3.599 27.370 5.792 ? ? ? H61  MM5 69 
MM5 H62  H62  H  0 1 N N N -5.005 28.239 5.091 ? ? ? H62  MM5 70 
MM5 H81  H81  H  0 1 N N N -3.880 30.141 6.425 ? ? ? H81  MM5 71 
MM5 H82  H82  H  0 1 N N N -3.894 31.085 4.897 ? ? ? H82  MM5 72 
MM5 H91  H91  H  0 1 N N N -1.273 30.018 5.997 ? ? ? H91  MM5 73 
MM5 H92  H92  H  0 1 N N N -1.988 31.506 6.705 ? ? ? H92  MM5 74 
MM5 H101 H101 H  0 0 N N N -0.547 32.366 5.050 ? ? ? H101 MM5 75 
MM5 H102 H102 H  0 0 N N N -2.121 32.310 4.186 ? ? ? H102 MM5 76 
MM5 H121 H121 H  0 0 N N N 1.314  30.890 3.635 ? ? ? H121 MM5 77 
MM5 H122 H122 H  0 0 N N N 0.428  32.039 2.576 ? ? ? H122 MM5 78 
MM5 H131 H131 H  0 0 N N N 0.323  30.547 0.842 ? ? ? H131 MM5 79 
MM5 H132 H132 H  0 0 N N N 1.654  29.705 1.706 ? ? ? H132 MM5 80 
MM5 H11  H11  H  0 1 N N N -0.736 27.667 0.274 ? ? ? H11  MM5 81 
MM5 H12  H12  H  0 1 N N N 0.960  27.522 0.850 ? ? ? H12  MM5 82 
MM5 H21  H21  H  0 1 N N N 0.006  25.582 1.777 ? ? ? H21  MM5 83 
MM5 H22  H22  H  0 1 N N N -0.189 26.758 3.121 ? ? ? H22  MM5 84 
MM5 H31  H31  H  0 1 N N N -2.229 25.236 2.469 ? ? ? H31  MM5 85 
MM5 H32  H32  H  0 1 N N N -2.418 26.363 1.082 ? ? ? H32  MM5 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MM5 C13 C12  SING N N 1  
MM5 C13 H131 SING N N 2  
MM5 C13 H132 SING N N 3  
MM5 C13 N14  SING N N 4  
MM5 N14 C1   SING N N 5  
MM5 N14 NI1  SING N N 6  
MM5 C1  H11  SING N N 7  
MM5 C1  H12  SING N N 8  
MM5 C1  C2   SING N N 9  
MM5 NI1 N4   SING N N 10 
MM5 NI1 N7   SING N N 11 
MM5 NI1 N11  SING N N 12 
MM5 C12 N11  SING N N 13 
MM5 C12 H121 SING N N 14 
MM5 C12 H122 SING N N 15 
MM5 N11 C10  SING N N 16 
MM5 C10 C9   SING N N 17 
MM5 C10 H101 SING N N 18 
MM5 C10 H102 SING N N 19 
MM5 C9  C8   SING N N 20 
MM5 C9  H91  SING N N 21 
MM5 C9  H92  SING N N 22 
MM5 C8  N7   SING N N 23 
MM5 C8  H81  SING N N 24 
MM5 C8  H82  SING N N 25 
MM5 N7  C6   SING N N 26 
MM5 C6  C5   SING N N 27 
MM5 C6  H61  SING N N 28 
MM5 C6  H62  SING N N 29 
MM5 C5  N4   SING N N 30 
MM5 C5  H51  SING N N 31 
MM5 C5  H52  SING N N 32 
MM5 N4  C28  SING N N 33 
MM5 N4  C3   SING N N 34 
MM5 C3  C2   SING N N 35 
MM5 C3  H31  SING N N 36 
MM5 C3  H32  SING N N 37 
MM5 C2  H21  SING N N 38 
MM5 C2  H22  SING N N 39 
MM5 C4  H4   SING N N 40 
MM5 C4  C7   DOUB Y N 41 
MM5 C4  C16  SING Y N 42 
MM5 C7  H7   SING N N 43 
MM5 C7  C11  SING Y N 44 
MM5 C11 C14  DOUB Y N 45 
MM5 C11 C28  SING N N 46 
MM5 C14 H14  SING N N 47 
MM5 C14 C15  SING Y N 48 
MM5 C15 H15  SING N N 49 
MM5 C15 C16  DOUB Y N 50 
MM5 C16 C17  SING N N 51 
MM5 C17 H171 SING N N 52 
MM5 C17 H172 SING N N 53 
MM5 C17 N1   SING N N 54 
MM5 N1  C18  SING N N 55 
MM5 N1  C27  SING N N 56 
MM5 N1  NI2  SING N N 57 
MM5 C18 H181 SING N N 58 
MM5 C18 H182 SING N N 59 
MM5 C18 C19  SING N N 60 
MM5 C19 H191 SING N N 61 
MM5 C19 H192 SING N N 62 
MM5 C19 N2   SING N N 63 
MM5 N2  C20  SING N N 64 
MM5 N2  NI2  SING N N 65 
MM5 C20 H201 SING N N 66 
MM5 C20 H202 SING N N 67 
MM5 C20 C21  SING N N 68 
MM5 C21 H211 SING N N 69 
MM5 C21 H212 SING N N 70 
MM5 C21 C22  SING N N 71 
MM5 C22 H221 SING N N 72 
MM5 C22 H222 SING N N 73 
MM5 C22 N3   SING N N 74 
MM5 N3  C23  SING N N 75 
MM5 N3  NI2  SING N N 76 
MM5 C23 H231 SING N N 77 
MM5 C23 H232 SING N N 78 
MM5 C23 C24  SING N N 79 
MM5 C24 H241 SING N N 80 
MM5 C24 H242 SING N N 81 
MM5 C24 N5   SING N N 82 
MM5 N5  C25  SING N N 83 
MM5 N5  NI2  SING N N 84 
MM5 C25 H251 SING N N 85 
MM5 C25 H252 SING N N 86 
MM5 C25 C26  SING N N 87 
MM5 C26 H261 SING N N 88 
MM5 C26 H262 SING N N 89 
MM5 C26 C27  SING N N 90 
MM5 C27 H271 SING N N 91 
MM5 C27 H272 SING N N 92 
MM5 C28 H281 SING N N 93 
MM5 C28 H282 SING N N 94 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MM5 InChI            InChI                1.06  "InChI=1S/C28H48N8.2Ni/c1-9-29-15-17-31-13-3-21-35(23-19-33-11-1)25-27-5-7-28(8-6-27)26-36-22-4-14-32-18-16-30-10-2-12-34-20-24-36;;/h5-8H,1-4,9-26H2;;/q-6;2*+3" 
MM5 InChIKey         InChI                1.06  XVYSAVBBVPTNSF-UHFFFAOYSA-N                                                                                                                                       
MM5 SMILES_CANONICAL CACTVS               3.385 "C1CN(CCN2CCCN3CCN(C1)[Ni]23)Cc4ccc(CN5CCCN6CCN7CCCN(CC5)[Ni]67)cc4"                                                                                              
MM5 SMILES           CACTVS               3.385 "C1CN(CCN2CCCN3CCN(C1)[Ni]23)Cc4ccc(CN5CCCN6CCN7CCCN(CC5)[Ni]67)cc4"                                                                                              
MM5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C[N]23CCCN4[Ni]25N(CCCN5CC3)CC4)C[N]67CCCN8[Ni]69N(CCCN9CC7)CC8"                                                                                        
MM5 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C[N]23CCCN4[Ni]25N(CCCN5CC3)CC4)C[N]67CCCN8[Ni]69N(CCCN9CC7)CC8"                                                                                        
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      MM5 
_pdbx_chem_comp_synonyms.name         "NICKEL(II)XYLYLBICYCLAM" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MM5 "Modify synonyms"   2021-03-01 PDBE 
MM5 "Modify descriptor" 2023-09-23 RCSB 
# 
