data_LO5
#

_chem_comp.id                                   LO5
_chem_comp.name                                 "1-(1,3-benzodioxol-5-yl)-~{N}-[[(2~{R})-oxolan-2-yl]methyl]methanamine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H17 N O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-08-28
_chem_comp.pdbx_modified_date                   2019-09-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       235.279
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LO5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6SO1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LO5  C4   C1   C  0  1  Y  N  N  26.172  103.834  13.952  -1.761   0.182  -0.939  C4   LO5   1  
LO5  C5   C2   C  0  1  Y  N  N  25.135  103.740  14.915  -1.118  -0.942  -0.454  C5   LO5   2  
LO5  C6   C3   C  0  1  N  N  N  25.374  104.274  16.302   0.260  -1.294  -0.952  C6   LO5   3  
LO5  C7   C4   C  0  1  N  N  N  24.424  106.576  15.752   2.627  -0.971  -0.557  C7   LO5   4  
LO5  C8   C5   C  0  1  N  N  R  24.739  107.540  14.587   3.647  -0.283   0.352  C8   LO5   5  
LO5  C10  C6   C  0  1  N  N  N  24.514  109.373  13.288   5.851   0.643   0.442  C10  LO5   6  
LO5  N    N1   N  0  1  N  N  N  25.658  105.794  16.195   1.268  -0.649  -0.100  N    LO5   7  
LO5  C    C7   C  0  1  Y  N  N  23.918  103.121  14.640  -1.736  -1.743   0.489  C    LO5   8  
LO5  O    O1   O  0  1  N  N  N  26.061  108.066  14.535   3.508   1.144   0.268  O    LO5   9  
LO5  C1   C8   C  0  1  Y  N  N  23.663  102.535  13.384  -3.000  -1.424   0.949  C1   LO5  10  
LO5  C11  C9   C  0  1  N  N  N  25.950  108.789  13.315   4.796   1.766   0.342  C11  LO5  11  
LO5  C12  C10  C  0  1  N  N  N  25.958  102.432  10.639  -4.836   1.582   0.270  C12  LO5  12  
LO5  C2   C11  C  0  1  Y  N  N  24.670  102.609  12.463  -3.651  -0.300   0.466  C2   LO5  13  
LO5  C3   C12  C  0  1  Y  N  N  25.900  103.250  12.735  -3.026   0.510  -0.478  C3   LO5  14  
LO5  C9   C13  C  0  1  N  N  N  23.887  108.809  14.563   5.088  -0.582  -0.134  C9   LO5  15  
LO5  O1   O2   O  0  1  N  N  N  26.698  103.165  11.636  -3.863   1.542  -0.791  O1   LO5  16  
LO5  O2   O3   O  0  1  N  N  N  24.689  102.104  11.192  -4.875   0.231   0.755  O2   LO5  17  
LO5  H1   H1   H  0  1  N  N  N  27.109  104.329  14.159  -1.275   0.806  -1.674  H1   LO5  18  
LO5  H2   H2   H  0  1  N  N  N  24.483  104.105  16.925   0.393  -2.375  -0.918  H2   LO5  19  
LO5  H3   H3   H  0  1  N  N  N  26.238  103.765  16.753   0.375  -0.946  -1.978  H3   LO5  20  
LO5  H4   H4   H  0  1  N  N  N  24.048  107.160  16.605   2.758  -0.620  -1.581  H4   LO5  21  
LO5  H5   H5   H  0  1  N  N  N  23.651  105.865  15.426   2.776  -2.050  -0.521  H5   LO5  22  
LO5  H6   H6   H  0  1  N  N  N  24.541  106.995  13.653   3.519  -0.616   1.383  H6   LO5  23  
LO5  H7   H7   H  0  1  N  N  N  24.534  110.473  13.311   6.726   0.877  -0.165  H7   LO5  24  
LO5  H8   H8   H  0  1  N  N  N  23.967  109.035  12.396   6.135   0.469   1.480  H8   LO5  25  
LO5  H9   H9   H  0  1  N  N  N  26.389  105.940  15.529   1.142  -0.906   0.867  H9   LO5  26  
LO5  H11  H11  H  0  1  N  N  N  23.155  103.090  15.404  -1.231  -2.620   0.866  H11  LO5  27  
LO5  H12  H12  H  0  1  N  N  N  22.722  102.053  13.161  -3.481  -2.052   1.685  H12  LO5  28  
LO5  H13  H13  H  0  1  N  N  N  26.105  108.117  12.458   4.850   2.404   1.224  H13  LO5  29  
LO5  H14  H14  H  0  1  N  N  N  26.692  109.600  13.283   4.972   2.359  -0.555  H14  LO5  30  
LO5  H15  H15  H  0  1  N  N  N  26.499  101.512  10.373  -4.499   2.261   1.054  H15  LO5  31  
LO5  H16  H16  H  0  1  N  N  N  24.051  109.451  15.441   5.463  -1.513   0.290  H16  LO5  32  
LO5  H17  H17  H  0  1  N  N  N  22.812  108.601  14.456   5.138  -0.599  -1.222  H17  LO5  33  
LO5  H10  H10  H  0  1  N  N  N  25.825  103.052   9.740  -5.814   1.883  -0.105  H10  LO5  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LO5  C12  O2   SING  N  N   1  
LO5  C12  O1   SING  N  N   2  
LO5  O2   C2   SING  N  N   3  
LO5  O1   C3   SING  N  N   4  
LO5  C2   C3   DOUB  Y  N   5  
LO5  C2   C1   SING  Y  N   6  
LO5  C3   C4   SING  Y  N   7  
LO5  C10  C11  SING  N  N   8  
LO5  C10  C9   SING  N  N   9  
LO5  C11  O    SING  N  N  10  
LO5  C1   C    DOUB  Y  N  11  
LO5  C4   C5   DOUB  Y  N  12  
LO5  O    C8   SING  N  N  13  
LO5  C9   C8   SING  N  N  14  
LO5  C8   C7   SING  N  N  15  
LO5  C    C5   SING  Y  N  16  
LO5  C5   C6   SING  N  N  17  
LO5  C7   N    SING  N  N  18  
LO5  N    C6   SING  N  N  19  
LO5  C4   H1   SING  N  N  20  
LO5  C6   H2   SING  N  N  21  
LO5  C6   H3   SING  N  N  22  
LO5  C7   H4   SING  N  N  23  
LO5  C7   H5   SING  N  N  24  
LO5  C8   H6   SING  N  N  25  
LO5  C10  H7   SING  N  N  26  
LO5  C10  H8   SING  N  N  27  
LO5  N    H9   SING  N  N  28  
LO5  C    H11  SING  N  N  29  
LO5  C1   H12  SING  N  N  30  
LO5  C11  H13  SING  N  N  31  
LO5  C11  H14  SING  N  N  32  
LO5  C12  H15  SING  N  N  33  
LO5  C9   H16  SING  N  N  34  
LO5  C9   H17  SING  N  N  35  
LO5  C12  H10  SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LO5  InChI             InChI                 1.03   "InChI=1S/C13H17NO3/c1-2-11(15-5-1)8-14-7-10-3-4-12-13(6-10)17-9-16-12/h3-4,6,11,14H,1-2,5,7-9H2/t11-/m1/s1"  
LO5  InChIKey          InChI                 1.03   GSKKKMLEVJZIAD-LLVKDONJSA-N  
LO5  SMILES_CANONICAL  CACTVS                3.385  "C1CO[C@H](C1)CNCc2ccc3OCOc3c2"  
LO5  SMILES            CACTVS                3.385  "C1CO[CH](C1)CNCc2ccc3OCOc3c2"  
LO5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc2c(cc1CNC[C@H]3CCCO3)OCO2"  
LO5  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc2c(cc1CNCC3CCCO3)OCO2"  
#
_pdbx_chem_comp_identifier.comp_id          LO5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "1-(1,3-benzodioxol-5-yl)-~{N}-[[(2~{R})-oxolan-2-yl]methyl]methanamine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LO5  "Create component"  2019-08-28  EBI   
LO5  "Initial release"   2019-10-02  RCSB  
##
