data_LM5
# 
_chem_comp.id                                    LM5 
_chem_comp.name                                  "(3S,4R,5S)-N-benzyl-3,4-dihydroxy-5-methyl-D-prolinamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H18 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-03-22 
_chem_comp.pdbx_modified_date                    2014-01-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        250.294 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LM5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4JL2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LM5 CAN CAN C 0 1 Y N N -27.526 -18.561 -17.335 -3.945 -0.760 -0.885 CAN LM5 1  
LM5 CAO CAO C 0 1 Y N N -27.638 -18.438 -18.725 -5.141 -0.108 -1.121 CAO LM5 2  
LM5 CAP CAP C 0 1 Y N N -28.550 -19.211 -19.421 -5.594 0.849  -0.233 CAP LM5 3  
LM5 CAQ CAQ C 0 1 Y N N -29.366 -20.102 -18.739 -4.851 1.155  0.892  CAQ LM5 4  
LM5 CAR CAR C 0 1 Y N N -29.286 -20.210 -17.351 -3.655 0.503  1.129  CAR LM5 5  
LM5 CAM CAM C 0 1 Y N N -28.342 -19.449 -16.636 -3.202 -0.454 0.240  CAM LM5 6  
LM5 CAL CAL C 0 1 N N N -28.323 -19.600 -15.245 -1.898 -1.164 0.498  CAL LM5 7  
LM5 N1  N1  N 0 1 N N N -27.040 -19.231 -14.567 -0.803 -0.419 -0.128 N1  LM5 8  
LM5 C   C   C 0 1 N N N -26.714 -17.991 -14.178 0.463  -0.870 -0.028 C   LM5 9  
LM5 O   O   O 0 1 N N N -27.395 -16.992 -14.453 0.696  -1.893 0.581  O   LM5 10 
LM5 CA  CA  C 0 1 N N R -25.423 -17.810 -13.350 1.589  -0.104 -0.673 CA  LM5 11 
LM5 N   N   N 0 1 N N N -24.804 -16.510 -13.636 2.773  -0.978 -0.821 N   LM5 12 
LM5 CD1 CD1 C 0 1 N N S -23.388 -16.806 -13.948 3.608  -0.736 0.383  CD1 LM5 13 
LM5 CAF CAF C 0 1 N N N -22.482 -15.559 -13.725 5.064  -1.122 0.117  CAF LM5 14 
LM5 CG  CG  C 0 1 N N R -23.058 -18.006 -13.084 3.480  0.793  0.603  CG  LM5 15 
LM5 OD2 OD2 O 0 1 N N N -23.026 -17.671 -11.673 4.365  1.504  -0.264 OD2 LM5 16 
LM5 CB  CB  C 0 1 N N S -24.290 -18.867 -13.453 2.006  1.073  0.229  CB  LM5 17 
LM5 OG  OG  O 0 1 N N N -24.507 -19.920 -12.552 1.901  2.306  -0.485 OG  LM5 18 
LM5 H1  H1  H 0 1 N N N -26.802 -17.964 -16.800 -3.594 -1.512 -1.576 H1  LM5 19 
LM5 H2  H2  H 0 1 N N N -27.010 -17.737 -19.256 -5.722 -0.347 -2.000 H2  LM5 20 
LM5 H3  H3  H 0 1 N N N -28.627 -19.121 -20.495 -6.528 1.359  -0.418 H3  LM5 21 
LM5 H4  H4  H 0 1 N N N -30.067 -20.715 -19.286 -5.204 1.904  1.585  H4  LM5 22 
LM5 H5  H5  H 0 1 N N N -29.950 -20.879 -16.823 -3.074 0.742  2.007  H5  LM5 23 
LM5 H6  H6  H 0 1 N N N -29.120 -18.968 -14.826 -1.726 -1.229 1.572  H6  LM5 24 
LM5 H7  H7  H 0 1 N N N -28.534 -20.655 -15.017 -1.942 -2.169 0.077  H7  LM5 25 
LM5 H9  H9  H 0 1 N N N -25.733 -17.796 -12.295 1.275  0.266  -1.649 H9  LM5 26 
LM5 H10 H10 H 0 1 N N N -25.250 -16.075 -14.418 2.501  -1.947 -0.883 H10 LM5 27 
LM5 H12 H12 H 0 1 N N N -23.307 -17.102 -15.004 3.216  -1.284 1.240  H12 LM5 28 
LM5 H13 H13 H 0 1 N N N -21.440 -15.815 -13.966 5.446  -0.544 -0.724 H13 LM5 29 
LM5 H14 H14 H 0 1 N N N -22.819 -14.740 -14.378 5.664  -0.913 1.003  H14 LM5 30 
LM5 H15 H15 H 0 1 N N N -22.548 -15.241 -12.674 5.121  -2.185 -0.117 H15 LM5 31 
LM5 H16 H16 H 0 1 N N N -22.129 -18.492 -13.417 3.672  1.050  1.644  H16 LM5 32 
LM5 H17 H17 H 0 1 N N N -22.816 -18.448 -11.167 4.324  2.465  -0.166 H17 LM5 33 
LM5 H18 H18 H 0 1 N N N -24.203 -19.222 -14.491 1.387  1.100  1.126  H18 LM5 34 
LM5 H19 H19 H 0 1 N N N -23.804 -20.555 -12.631 2.152  3.083  0.033  H19 LM5 35 
LM5 H20 H20 H 0 1 N N N -26.380 -19.962 -14.392 -0.990 0.399  -0.615 H20 LM5 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LM5 CAN CAO DOUB Y N 1  
LM5 CAN CAM SING Y N 2  
LM5 CAO CAP SING Y N 3  
LM5 CAP CAQ DOUB Y N 4  
LM5 CAQ CAR SING Y N 5  
LM5 CAR CAM DOUB Y N 6  
LM5 CAM CAL SING N N 7  
LM5 CAL N1  SING N N 8  
LM5 N1  C   SING N N 9  
LM5 C   O   DOUB N N 10 
LM5 C   CA  SING N N 11 
LM5 CA  N   SING N N 12 
LM5 CA  CB  SING N N 13 
LM5 N   CD1 SING N N 14 
LM5 CD1 CAF SING N N 15 
LM5 CD1 CG  SING N N 16 
LM5 CG  OD2 SING N N 17 
LM5 CG  CB  SING N N 18 
LM5 CB  OG  SING N N 19 
LM5 CAN H1  SING N N 20 
LM5 CAO H2  SING N N 21 
LM5 CAP H3  SING N N 22 
LM5 CAQ H4  SING N N 23 
LM5 CAR H5  SING N N 24 
LM5 CAL H6  SING N N 25 
LM5 CAL H7  SING N N 26 
LM5 CA  H9  SING N N 27 
LM5 N   H10 SING N N 28 
LM5 CD1 H12 SING N N 29 
LM5 CAF H13 SING N N 30 
LM5 CAF H14 SING N N 31 
LM5 CAF H15 SING N N 32 
LM5 CG  H16 SING N N 33 
LM5 OD2 H17 SING N N 34 
LM5 CB  H18 SING N N 35 
LM5 OG  H19 SING N N 36 
LM5 N1  H20 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LM5 SMILES           ACDLabs              12.01 "O=C(NCc1ccccc1)C2NC(C)C(O)C2O"                                                                                                     
LM5 InChI            InChI                1.03  "InChI=1S/C13H18N2O3/c1-8-11(16)12(17)10(15-8)13(18)14-7-9-5-3-2-4-6-9/h2-6,8,10-12,15-17H,7H2,1H3,(H,14,18)/t8-,10+,11+,12-/m0/s1" 
LM5 InChIKey         InChI                1.03  RJAKCSBNEIOVPB-GMNPVEAJSA-N                                                                                                         
LM5 SMILES_CANONICAL CACTVS               3.370 "C[C@@H]1N[C@H]([C@H](O)[C@@H]1O)C(=O)NCc2ccccc2"                                                                                   
LM5 SMILES           CACTVS               3.370 "C[CH]1N[CH]([CH](O)[CH]1O)C(=O)NCc2ccccc2"                                                                                         
LM5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1[C@H]([C@H]([C@@H](N1)C(=O)NCc2ccccc2)O)O"                                                                                  
LM5 SMILES           "OpenEye OEToolkits" 1.7.6 "CC1C(C(C(N1)C(=O)NCc2ccccc2)O)O"                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LM5 "SYSTEMATIC NAME" ACDLabs              12.01 "(3S,4R,5S)-N-benzyl-3,4-dihydroxy-5-methyl-D-prolinamide"                           
LM5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4R,5S)-5-methyl-3,4-bis(oxidanyl)-N-(phenylmethyl)pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LM5 "Create component" 2013-03-22 RCSB 
LM5 "Initial release"  2014-01-22 RCSB 
# 
