data_LC5
# 
_chem_comp.id                                    LC5 
_chem_comp.name                                  "[(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-(naphthalen-1-yl)pentyl]phosphonic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H24 N O5 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-04-13 
_chem_comp.pdbx_modified_date                    2016-08-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        365.361 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LC5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5JAZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LC5 O12 O1  O 0 1 N N N 3.764  15.194 20.821 -1.987 2.380  -0.348 O12 LC5 1  
LC5 C4  C1  C 0 1 N N N 3.332  14.150 20.382 -3.005 1.924  0.127  C4  LC5 2  
LC5 N9  N1  N 0 1 N N N 3.902  13.567 19.295 -4.111 2.690  0.214  N9  LC5 3  
LC5 O10 O2  O 0 1 N N N 4.995  14.183 18.689 -5.300 2.158  0.769  O10 LC5 4  
LC5 C11 C2  C 0 1 N N N 3.409  12.303 18.739 -4.082 4.074  -0.267 C11 LC5 5  
LC5 C3  C3  C 0 1 N N N 2.080  13.588 21.008 -3.037 0.499  0.616  C3  LC5 6  
LC5 C2  C4  C 0 1 N N R 0.863  14.382 20.470 -1.698 -0.176 0.308  C2  LC5 7  
LC5 C1  C5  C 0 1 N N N -0.225 14.509 21.544 -1.786 -1.664 0.651  C1  LC5 8  
LC5 P5  P1  P 0 1 N N N -0.904 16.202 21.557 -2.744 -2.529 -0.636 P5  LC5 9  
LC5 O6  O3  O 0 1 N N N -2.281 16.140 22.191 -2.758 -4.109 -0.324 O6  LC5 10 
LC5 O7  O4  O 0 1 N N N -0.013 17.109 22.384 -4.255 -1.971 -0.647 O7  LC5 11 
LC5 O8  O5  O 0 1 N N N -1.020 16.716 20.150 -2.122 -2.293 -1.957 O8  LC5 12 
LC5 C13 C6  C 0 1 N N N 0.301  13.758 19.142 -0.595 0.476  1.143  C13 LC5 13 
LC5 C14 C7  C 0 1 N N N -0.283 12.328 19.347 0.761  -0.112 0.745  C14 LC5 14 
LC5 C15 C8  C 0 1 N N N -0.693 11.707 17.982 1.865  0.540  1.580  C15 LC5 15 
LC5 C16 C9  C 0 1 Y N N 0.533  11.214 17.198 3.200  -0.039 1.188  C16 LC5 16 
LC5 C17 C10 C 0 1 Y N N 1.222  10.033 17.573 3.904  0.489  0.092  C17 LC5 17 
LC5 C23 C11 C 0 1 Y N N 0.821  9.283  18.698 3.390  1.559  -0.659 C23 LC5 18 
LC5 C25 C12 C 0 1 Y N N 1.512  8.132  19.043 4.101  2.045  -1.713 C25 LC5 19 
LC5 C24 C13 C 0 1 Y N N 2.612  7.740  18.307 5.334  1.497  -2.060 C24 LC5 20 
LC5 C22 C14 C 0 1 Y N N 3.014  8.476  17.193 5.864  0.459  -1.356 C22 LC5 21 
LC5 C19 C15 C 0 1 Y N N 2.326  9.619  16.829 5.159  -0.069 -0.261 C19 LC5 22 
LC5 C21 C16 C 0 1 Y N N 2.751  10.364 15.725 5.673  -1.139 0.491  C21 LC5 23 
LC5 C20 C17 C 0 1 Y N N 2.068  11.503 15.350 4.963  -1.624 1.546  C20 LC5 24 
LC5 C18 C18 C 0 1 Y N N 0.954  11.925 16.073 3.731  -1.072 1.896  C18 LC5 25 
LC5 H1  H1  H 0 1 N N N 5.205  14.985 19.154 -6.038 2.782  0.788  H1  LC5 26 
LC5 H2  H2  H 0 1 N N N 2.549  11.953 19.329 -4.368 4.099  -1.319 H2  LC5 27 
LC5 H3  H3  H 0 1 N N N 3.099  12.458 17.695 -4.781 4.675  0.314  H3  LC5 28 
LC5 H4  H4  H 0 1 N N N 4.210  11.550 18.775 -3.076 4.477  -0.154 H4  LC5 29 
LC5 H5  H5  H 0 1 N N N 1.977  12.526 20.742 -3.210 0.487  1.692  H5  LC5 30 
LC5 H6  H6  H 0 1 N N N 2.135  13.689 22.102 -3.839 -0.040 0.113  H6  LC5 31 
LC5 H7  H7  H 0 1 N N N 1.213  15.397 20.229 -1.469 -0.060 -0.751 H7  LC5 32 
LC5 H8  H8  H 0 1 N N N -1.034 13.795 21.328 -0.782 -2.085 0.701  H8  LC5 33 
LC5 H9  H9  H 0 1 N N N 0.209  14.284 22.529 -2.280 -1.786 1.615  H9  LC5 34 
LC5 H10 H10 H 0 1 N N N -2.931 16.439 21.567 -3.252 -4.633 -0.970 H10 LC5 35 
LC5 H11 H11 H 0 1 N N N 0.297  17.827 21.844 -4.725 -2.093 0.189  H11 LC5 36 
LC5 H12 H12 H 0 1 N N N 1.117  13.702 18.407 -0.591 1.551  0.964  H12 LC5 37 
LC5 H13 H13 H 0 1 N N N -0.496 14.411 18.756 -0.777 0.284  2.200  H13 LC5 38 
LC5 H14 H14 H 0 1 N N N -1.168 12.388 19.998 0.757  -1.187 0.923  H14 LC5 39 
LC5 H15 H15 H 0 1 N N N 0.478  11.691 19.821 0.944  0.080  -0.312 H15 LC5 40 
LC5 H16 H16 H 0 1 N N N -1.216 12.469 17.385 1.868  1.615  1.401  H16 LC5 41 
LC5 H17 H17 H 0 1 N N N -1.367 10.857 18.164 1.682  0.348  2.637  H17 LC5 42 
LC5 H18 H18 H 0 1 N N N -0.023 9.605  19.290 2.436  1.994  -0.401 H18 LC5 43 
LC5 H19 H19 H 0 1 N N N 1.190  7.542  19.888 3.704  2.867  -2.289 H19 LC5 44 
LC5 H20 H20 H 0 1 N N N 3.165  6.858  18.596 5.878  1.900  -2.902 H20 LC5 45 
LC5 H21 H21 H 0 1 N N N 3.865  8.152  16.613 6.820  0.044  -1.637 H21 LC5 46 
LC5 H22 H22 H 0 1 N N N 3.617  10.047 15.163 6.628  -1.574 0.234  H22 LC5 47 
LC5 H23 H23 H 0 1 N N N 2.398  12.070 14.492 5.361  -2.446 2.122  H23 LC5 48 
LC5 H24 H24 H 0 1 N N N 0.414  12.807 15.761 3.188  -1.476 2.737  H24 LC5 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LC5 C20 C21 DOUB Y N 1  
LC5 C20 C18 SING Y N 2  
LC5 C21 C19 SING Y N 3  
LC5 C18 C16 DOUB Y N 4  
LC5 C19 C22 DOUB Y N 5  
LC5 C19 C17 SING Y N 6  
LC5 C22 C24 SING Y N 7  
LC5 C16 C17 SING Y N 8  
LC5 C16 C15 SING N N 9  
LC5 C17 C23 DOUB Y N 10 
LC5 C15 C14 SING N N 11 
LC5 C24 C25 DOUB Y N 12 
LC5 O10 N9  SING N N 13 
LC5 C23 C25 SING Y N 14 
LC5 C11 N9  SING N N 15 
LC5 C13 C14 SING N N 16 
LC5 C13 C2  SING N N 17 
LC5 N9  C4  SING N N 18 
LC5 O8  P5  DOUB N N 19 
LC5 C4  O12 DOUB N N 20 
LC5 C4  C3  SING N N 21 
LC5 C2  C3  SING N N 22 
LC5 C2  C1  SING N N 23 
LC5 C1  P5  SING N N 24 
LC5 P5  O6  SING N N 25 
LC5 P5  O7  SING N N 26 
LC5 O10 H1  SING N N 27 
LC5 C11 H2  SING N N 28 
LC5 C11 H3  SING N N 29 
LC5 C11 H4  SING N N 30 
LC5 C3  H5  SING N N 31 
LC5 C3  H6  SING N N 32 
LC5 C2  H7  SING N N 33 
LC5 C1  H8  SING N N 34 
LC5 C1  H9  SING N N 35 
LC5 O6  H10 SING N N 36 
LC5 O7  H11 SING N N 37 
LC5 C13 H12 SING N N 38 
LC5 C13 H13 SING N N 39 
LC5 C14 H14 SING N N 40 
LC5 C14 H15 SING N N 41 
LC5 C15 H16 SING N N 42 
LC5 C15 H17 SING N N 43 
LC5 C23 H18 SING N N 44 
LC5 C25 H19 SING N N 45 
LC5 C24 H20 SING N N 46 
LC5 C22 H21 SING N N 47 
LC5 C21 H22 SING N N 48 
LC5 C20 H23 SING N N 49 
LC5 C18 H24 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LC5 SMILES           ACDLabs              12.01 "O=C(CC(CP(O)(O)=O)CCCc2c1ccccc1ccc2)N(O)C"                                                                                                                    
LC5 InChI            InChI                1.03  "InChI=1S/C18H24NO5P/c1-19(21)18(20)12-14(13-25(22,23)24)6-4-8-16-10-5-9-15-7-2-3-11-17(15)16/h2-3,5,7,9-11,14,21H,4,6,8,12-13H2,1H3,(H2,22,23,24)/t14-/m1/s1" 
LC5 InChIKey         InChI                1.03  HUBGFLNAUJJVOG-CQSZACIVSA-N                                                                                                                                    
LC5 SMILES_CANONICAL CACTVS               3.385 "CN(O)C(=O)C[C@@H](CCCc1cccc2ccccc12)C[P](O)(O)=O"                                                                                                             
LC5 SMILES           CACTVS               3.385 "CN(O)C(=O)C[CH](CCCc1cccc2ccccc12)C[P](O)(O)=O"                                                                                                               
LC5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CN(C(=O)C[C@@H](CCCc1cccc2c1cccc2)CP(=O)(O)O)O"                                                                                                               
LC5 SMILES           "OpenEye OEToolkits" 2.0.4 "CN(C(=O)CC(CCCc1cccc2c1cccc2)CP(=O)(O)O)O"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LC5 "SYSTEMATIC NAME" ACDLabs              12.01 "[(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-(naphthalen-1-yl)pentyl]phosphonic acid"               
LC5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "[(2~{R})-2-[2-[methyl(oxidanyl)amino]-2-oxidanylidene-ethyl]-5-naphthalen-1-yl-pentyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LC5 "Create component" 2016-04-13 EBI  
LC5 "Initial release"  2016-08-23 RCSB 
# 
