data_JM5
# 
_chem_comp.id                                    JM5 
_chem_comp.name                                  "N~5~-[2-(propylsulfanyl)ethanimidoyl]-L-ornithine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H21 N3 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-09-17 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        247.358 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JM5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3JT7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JM5 C    C    C 0 1 N N N 17.702 -1.645 57.600 -5.934 0.207  0.123  C    JM5 1  
JM5 N    N    N 0 1 N N N 16.329 -0.442 55.964 -4.698 -1.802 -0.463 N    JM5 2  
JM5 C1   C1   C 0 1 N N N 11.535 -0.721 58.774 1.484  0.235  -0.077 C1   JM5 3  
JM5 C2   C2   C 0 1 N N N 10.833 0.106  59.579 2.756  -0.500 0.261  C2   JM5 4  
JM5 S3   S3   S 0 1 N N N 10.490 1.768  59.074 4.184  0.508  -0.224 S3   JM5 5  
JM5 C4   C4   C 0 1 N N N 10.871 2.905  60.361 5.595  -0.526 0.254  C4   JM5 6  
JM5 C5   C5   C 0 1 N N N 10.903 2.156  61.685 6.898  0.196  -0.095 C5   JM5 7  
JM5 C6   C6   C 0 1 N N N 12.322 1.775  62.020 8.089  -0.676 0.308  C6   JM5 8  
JM5 CA   CA   C 0 1 N N S 16.873 -0.406 57.309 -4.666 -0.576 0.347  CA   JM5 9  
JM5 CB   CB   C 0 1 N N N 15.733 -0.315 58.342 -3.462 0.274  -0.062 CB   JM5 10 
JM5 CD   CD   C 0 1 N N N 13.462 0.593  58.786 -0.966 0.379  -0.128 CD   JM5 11 
JM5 NE   NE   N 0 1 N N N 12.806 -0.449 58.415 0.270  -0.336 0.200  NE   JM5 12 
JM5 CG   CG   C 0 1 N N N 14.846 0.921  58.238 -2.171 -0.472 0.280  CG   JM5 13 
JM5 NH   NH   N 0 1 N N N 10.942 -1.763 58.376 1.540  1.403  -0.628 NH   JM5 14 
JM5 OA1  OA1  O 0 1 N N N 17.883 -2.514 56.730 -6.604 0.003  -0.862 OA1  JM5 15 
JM5 OA2  OA2  O 0 1 N N N 18.183 -1.822 58.731 -6.321 1.127  1.020  OA2  JM5 16 
JM5 HN   HN   H 0 1 N N N 15.789 0.384  55.800 -5.447 -2.411 -0.169 HN   JM5 17 
JM5 HNA  HNA  H 0 1 N N N 17.078 -0.487 55.303 -4.775 -1.584 -1.446 HNA  JM5 18 
JM5 H2   H2   H 0 1 N N N 9.854  -0.374 59.727 2.792  -0.689 1.334  H2   JM5 19 
JM5 H2A  H2A  H 0 1 N N N 11.412 0.186  60.511 2.782  -1.448 -0.276 H2A  JM5 20 
JM5 H4   H4   H 0 1 N N N 11.852 3.364  60.171 5.561  -0.715 1.327  H4   JM5 21 
JM5 H4A  H4A  H 0 1 N N N 10.104 3.692  60.399 5.550  -1.474 -0.283 H4A  JM5 22 
JM5 H5   H5   H 0 1 N N N 10.501 2.802  62.480 6.933  0.384  -1.168 H5   JM5 23 
JM5 H5A  H5A  H 0 1 N N N 10.290 1.246  61.605 6.944  1.143  0.442  H5A  JM5 24 
JM5 H6   H6   H 0 1 N N N 12.341 1.234  62.978 8.054  -0.865 1.381  H6   JM5 25 
JM5 H6A  H6A  H 0 1 N N N 12.725 1.129  61.226 8.043  -1.624 -0.229 H6A  JM5 26 
JM5 H6B  H6B  H 0 1 N N N 12.936 2.684  62.101 9.017  -0.162 0.060  H6B  JM5 27 
JM5 HA   HA   H 0 1 N N N 17.519 0.481  57.383 -4.583 -0.840 1.401  HA   JM5 28 
JM5 HB   HB   H 0 1 N N N 15.089 -1.196 58.202 -3.498 0.463  -1.135 HB   JM5 29 
JM5 HBA  HBA  H 0 1 N N N 16.193 -0.308 59.341 -3.487 1.222  0.475  HBA  JM5 30 
JM5 HD   HD   H 0 1 N N N 12.829 1.450  58.513 -0.992 1.327  0.409  HD   JM5 31 
JM5 HG   HG   H 0 1 N N N 15.288 1.742  58.822 -2.135 -0.661 1.353  HG   JM5 32 
JM5 HGA  HGA  H 0 1 N N N 14.762 1.226  57.185 -2.145 -1.420 -0.257 HGA  JM5 33 
JM5 HNH  HNH  H 0 1 N N N 11.524 -2.324 57.788 0.721  1.876  -0.846 HNH  JM5 34 
JM5 HOA2 HOA2 H 0 0 N N N 18.645 -2.652 58.753 -7.141 1.605  0.833  HOA2 JM5 35 
JM5 H20  H20  H 0 1 N N N 13.596 0.482  59.872 -1.003 0.568  -1.201 H20  JM5 36 
JM5 H21  H21  H 0 1 N N N 13.271 -1.103 57.819 0.228  -1.212 0.613  H21  JM5 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JM5 C   OA2  SING N N 1  
JM5 N   CA   SING N N 2  
JM5 N   HN   SING N N 3  
JM5 N   HNA  SING N N 4  
JM5 C1  C2   SING N N 5  
JM5 C2  H2   SING N N 6  
JM5 C2  H2A  SING N N 7  
JM5 S3  C2   SING N N 8  
JM5 S3  C4   SING N N 9  
JM5 C4  C5   SING N N 10 
JM5 C4  H4   SING N N 11 
JM5 C4  H4A  SING N N 12 
JM5 C5  C6   SING N N 13 
JM5 C5  H5   SING N N 14 
JM5 C5  H5A  SING N N 15 
JM5 C6  H6   SING N N 16 
JM5 C6  H6A  SING N N 17 
JM5 C6  H6B  SING N N 18 
JM5 CA  C    SING N N 19 
JM5 CA  CB   SING N N 20 
JM5 CA  HA   SING N N 21 
JM5 CB  HB   SING N N 22 
JM5 CB  HBA  SING N N 23 
JM5 CD  HD   SING N N 24 
JM5 NE  C1   SING N N 25 
JM5 NE  CD   SING N N 26 
JM5 CG  CB   SING N N 27 
JM5 CG  CD   SING N N 28 
JM5 CG  HG   SING N N 29 
JM5 CG  HGA  SING N N 30 
JM5 NH  C1   DOUB N N 31 
JM5 NH  HNH  SING N N 32 
JM5 OA1 C    DOUB N N 33 
JM5 OA2 HOA2 SING N N 34 
JM5 CD  H20  SING N N 35 
JM5 NE  H21  SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JM5 SMILES           ACDLabs              11.02 "O=C(O)C(N)CCCNC(=[N@H])CSCCC"                                                                                
JM5 SMILES_CANONICAL CACTVS               3.352 "CCCSCC(=N)NCCC[C@H](N)C(O)=O"                                                                                
JM5 SMILES           CACTVS               3.352 "CCCSCC(=N)NCCC[CH](N)C(O)=O"                                                                                 
JM5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[H]/N=C(/CSCCC)\NCCC[C@@H](C(=O)O)N"                                                                         
JM5 SMILES           "OpenEye OEToolkits" 1.7.0 "CCCSCC(=N)NCCCC(C(=O)O)N"                                                                                    
JM5 InChI            InChI                1.03  "InChI=1S/C10H21N3O2S/c1-2-6-16-7-9(12)13-5-3-4-8(11)10(14)15/h8H,2-7,11H2,1H3,(H2,12,13)(H,14,15)/t8-/m0/s1" 
JM5 InChIKey         InChI                1.03  RLVQEZKGBMYDBZ-QMMMGPOBSA-N                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JM5 "SYSTEMATIC NAME" ACDLabs              11.02 "N~5~-[(1Z)-2-(propylsulfanyl)ethanimidoyl]-L-ornithine"            
JM5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-azanyl-5-(2-propylsulfanylethanimidoylamino)pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JM5 "Create component"  2009-09-17 RCSB 
JM5 "Modify descriptor" 2011-06-04 RCSB 
# 
