data_JD5
# 
_chem_comp.id                                    JD5 
_chem_comp.name                                  "[({5-[4-(cyclopropyloxy)phenyl]pyridin-3-yl}amino)methanediyl]bis(phosphonic acid)" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H18 N2 O7 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-03-15 
_chem_comp.pdbx_modified_date                    2014-12-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        400.260 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JD5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4JJV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JD5 OAJ OAJ O 0 1 N N N 16.036 32.218 -10.759 2.921  -2.325 -0.622 OAJ JD5 1  
JD5 PAI PAI P 0 1 N N N 16.165 33.487 -9.744  3.869  -1.193 -0.734 PAI JD5 2  
JD5 OAK OAK O 0 1 N N N 17.584 33.413 -9.121  5.357  -1.704 -0.393 OAK JD5 3  
JD5 OAL OAL O 0 1 N N N 16.061 34.809 -10.595 3.832  -0.610 -2.235 OAL JD5 4  
JD5 CAH CAH C 0 1 N N N 14.860 33.508 -8.518  3.392  0.118  0.439  CAH JD5 5  
JD5 PAM PAM P 0 1 N N N 15.026 35.033 -7.457  4.559  1.512  0.300  PAM JD5 6  
JD5 OAO OAO O 0 1 N N N 14.861 36.234 -8.470  4.525  2.047  -1.079 OAO JD5 7  
JD5 OAP OAP O 0 1 N N N 16.394 35.146 -6.804  4.137  2.670  1.336  OAP JD5 8  
JD5 OAN OAN O 0 1 N N N 13.945 35.026 -6.431  6.047  1.001  0.641  OAN JD5 9  
JD5 NAG NAG N 0 1 N N N 15.093 32.415 -7.560  2.037  0.582  0.128  NAG JD5 10 
JD5 CAD CAD C 0 1 Y N N 14.874 31.108 -7.920  0.934  -0.206 0.464  CAD JD5 11 
JD5 CAE CAE C 0 1 Y N N 15.661 30.132 -7.354  -0.355 0.226  0.173  CAE JD5 12 
JD5 CAC CAC C 0 1 Y N N 13.915 30.722 -8.871  1.111  -1.436 1.088  CAC JD5 13 
JD5 NAB NAB N 0 1 Y N N 13.757 29.379 -9.219  0.077  -2.188 1.410  NAB JD5 14 
JD5 CAA CAA C 0 1 Y N N 14.586 28.428 -8.558  -1.161 -1.814 1.158  CAA JD5 15 
JD5 CAF CAF C 0 1 Y N N 15.521 28.766 -7.611  -1.425 -0.599 0.529  CAF JD5 16 
JD5 CAQ CAQ C 0 1 Y N N 16.372 27.812 -6.928  -2.821 -0.184 0.249  CAQ JD5 17 
JD5 CAV CAV C 0 1 Y N N 17.667 28.193 -6.673  -3.882 -1.012 0.613  CAV JD5 18 
JD5 CAU CAU C 0 1 Y N N 18.599 27.367 -6.063  -5.179 -0.623 0.351  CAU JD5 19 
JD5 CAR CAR C 0 1 Y N N 16.064 26.514 -6.567  -3.075 1.036  -0.375 CAR JD5 20 
JD5 CAS CAS C 0 1 Y N N 17.023 25.639 -5.946  -4.374 1.419  -0.634 CAS JD5 21 
JD5 CAT CAT C 0 1 Y N N 18.293 26.077 -5.636  -5.429 0.590  -0.275 CAT JD5 22 
JD5 OAW OAW O 0 1 N N N 19.326 25.349 -4.995  -6.708 0.970  -0.532 OAW JD5 23 
JD5 CAX CAX C 0 1 N N N 18.927 24.447 -4.018  -7.735 0.013  -0.266 CAX JD5 24 
JD5 CAY CAY C 0 1 N N N 18.846 23.191 -4.607  -8.972 0.498  0.492  CAY JD5 25 
JD5 CAZ CAZ C 0 1 N N N 19.811 23.373 -3.603  -9.066 0.181  -1.002 CAZ JD5 26 
JD5 H1  H1  H 0 1 N N N 18.044 32.658 -9.468  6.032  -1.013 -0.447 H1  JD5 27 
JD5 H2  H2  H 0 1 N N N 15.946 34.588 -11.512 4.076  -1.255 -2.913 H2  JD5 28 
JD5 H3  H3  H 0 1 N N N 13.874 33.502 -9.005  3.416  -0.277 1.454  H3  JD5 29 
JD5 H4  H4  H 0 1 N N N 16.846 35.908 -7.146  4.137  2.389  2.261  H4  JD5 30 
JD5 H5  H5  H 0 1 N N N 13.356 35.755 -6.586  6.722  1.692  0.587  H5  JD5 31 
JD5 H6  H6  H 0 1 N N N 16.052 32.478 -7.283  1.907  1.437  -0.311 H6  JD5 32 
JD5 H7  H7  H 0 1 N N N 16.436 30.441 -6.668  -0.525 1.174  -0.315 H7  JD5 33 
JD5 H8  H8  H 0 1 N N N 13.293 31.472 -9.338  2.110  -1.780 1.313  H8  JD5 34 
JD5 H9  H9  H 0 1 N N N 14.473 27.385 -8.815  -1.980 -2.460 1.437  H9  JD5 35 
JD5 H10 H10 H 0 1 N N N 17.975 29.187 -6.962  -3.688 -1.956 1.100  H10 JD5 36 
JD5 H11 H11 H 0 1 N N N 19.602 27.739 -5.913  -6.002 -1.264 0.633  H11 JD5 37 
JD5 H12 H12 H 0 1 N N N 15.068 26.143 -6.758  -2.256 1.681  -0.655 H12 JD5 38 
JD5 H13 H13 H 0 1 N N N 16.743 24.621 -5.719  -4.572 2.365  -1.117 H13 JD5 39 
JD5 H14 H14 H 0 1 N N N 18.138 24.749 -3.314  -7.392 -1.003 -0.072 H14 JD5 40 
JD5 H15 H15 H 0 1 N N N 17.971 22.554 -4.410  -9.444 -0.200 1.185  H15 JD5 41 
JD5 H16 H16 H 0 1 N N N 19.167 23.059 -5.651  -9.003 1.546  0.788  H16 JD5 42 
JD5 H17 H17 H 0 1 N N N 19.684 22.899 -2.619  -9.158 1.022  -1.689 H17 JD5 43 
JD5 H18 H18 H 0 1 N N N 20.880 23.404 -3.860  -9.598 -0.725 -1.292 H18 JD5 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JD5 OAJ PAI DOUB N N 1  
JD5 OAL PAI SING N N 2  
JD5 PAI OAK SING N N 3  
JD5 PAI CAH SING N N 4  
JD5 NAB CAC DOUB Y N 5  
JD5 NAB CAA SING Y N 6  
JD5 CAC CAD SING Y N 7  
JD5 CAA CAF DOUB Y N 8  
JD5 CAH NAG SING N N 9  
JD5 CAH PAM SING N N 10 
JD5 OAO PAM DOUB N N 11 
JD5 CAD NAG SING N N 12 
JD5 CAD CAE DOUB Y N 13 
JD5 CAF CAE SING Y N 14 
JD5 CAF CAQ SING N N 15 
JD5 PAM OAP SING N N 16 
JD5 PAM OAN SING N N 17 
JD5 CAQ CAV DOUB Y N 18 
JD5 CAQ CAR SING Y N 19 
JD5 CAV CAU SING Y N 20 
JD5 CAR CAS DOUB Y N 21 
JD5 CAU CAT DOUB Y N 22 
JD5 CAS CAT SING Y N 23 
JD5 CAT OAW SING N N 24 
JD5 OAW CAX SING N N 25 
JD5 CAY CAX SING N N 26 
JD5 CAY CAZ SING N N 27 
JD5 CAX CAZ SING N N 28 
JD5 OAK H1  SING N N 29 
JD5 OAL H2  SING N N 30 
JD5 CAH H3  SING N N 31 
JD5 OAP H4  SING N N 32 
JD5 OAN H5  SING N N 33 
JD5 NAG H6  SING N N 34 
JD5 CAE H7  SING N N 35 
JD5 CAC H8  SING N N 36 
JD5 CAA H9  SING N N 37 
JD5 CAV H10 SING N N 38 
JD5 CAU H11 SING N N 39 
JD5 CAR H12 SING N N 40 
JD5 CAS H13 SING N N 41 
JD5 CAX H14 SING N N 42 
JD5 CAY H15 SING N N 43 
JD5 CAY H16 SING N N 44 
JD5 CAZ H17 SING N N 45 
JD5 CAZ H18 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JD5 SMILES           ACDLabs              12.01 "O=P(O)(O)C(Nc1cc(cnc1)c3ccc(OC2CC2)cc3)P(=O)(O)O"                                                                                                         
JD5 InChI            InChI                1.03  "InChI=1S/C15H18N2O7P2/c18-25(19,20)15(26(21,22)23)17-12-7-11(8-16-9-12)10-1-3-13(4-2-10)24-14-5-6-14/h1-4,7-9,14-15,17H,5-6H2,(H2,18,19,20)(H2,21,22,23)" 
JD5 InChIKey         InChI                1.03  QCLQOQRSHDMFKS-UHFFFAOYSA-N                                                                                                                                
JD5 SMILES_CANONICAL CACTVS               3.370 "O[P](O)(=O)C(Nc1cncc(c1)c2ccc(OC3CC3)cc2)[P](O)(O)=O"                                                                                                     
JD5 SMILES           CACTVS               3.370 "O[P](O)(=O)C(Nc1cncc(c1)c2ccc(OC3CC3)cc2)[P](O)(O)=O"                                                                                                     
JD5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1c2cc(cnc2)NC(P(=O)(O)O)P(=O)(O)O)OC3CC3"                                                                                                         
JD5 SMILES           "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1c2cc(cnc2)NC(P(=O)(O)O)P(=O)(O)O)OC3CC3"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JD5 "SYSTEMATIC NAME" ACDLabs              12.01 "[({5-[4-(cyclopropyloxy)phenyl]pyridin-3-yl}amino)methanediyl]bis(phosphonic acid)" 
JD5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[[5-(4-cyclopropyloxyphenyl)pyridin-3-yl]amino]-phosphono-methyl]phosphonic acid"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JD5 "Create component" 2013-03-15 RCSB 
JD5 "Initial release"  2014-12-31 RCSB 
# 
