data_IV5
# 
_chem_comp.id                                    IV5 
_chem_comp.name                                  "(1R,3S,5Z)-4-methylidene-5-[(E)-9-methyl-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]-9-oxidanyl-dec-2-enylidene]cyclohexane-1,3-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H50 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-13 
_chem_comp.pdbx_modified_date                    2022-11-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        498.737 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IV5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZFG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IV5 C10 C1  C 0 1 Y N N -26.548 17.436 -4.782  -2.026  -2.640 -0.296 C10 IV5 1  
IV5 C13 C2  C 0 1 Y N N -28.622 19.190 -4.087  0.500   -2.422 0.835  C13 IV5 2  
IV5 C15 C3  C 0 1 Y N N -27.903 17.110 -5.030  -1.168  -1.655 -0.738 C15 IV5 3  
IV5 C17 C4  C 0 1 N N N -31.186 16.263 -5.206  2.310   -0.869 -1.336 C17 IV5 4  
IV5 C20 C5  C 0 1 N N N -29.732 13.035 -7.003  5.777   -1.820 0.044  C20 IV5 5  
IV5 C21 C6  C 0 1 N N N -29.890 11.589 -6.443  7.078   -2.204 -0.663 C21 IV5 6  
IV5 C22 C7  C 0 1 N N N -29.740 10.549 -7.586  8.160   -2.487 0.380  C22 IV5 7  
IV5 C24 C8  C 0 1 N N N -30.748 10.844 -8.720  9.493   -2.750 -0.325 C24 IV5 8  
IV5 C26 C9  C 0 1 N N N -31.355 18.717 -4.930  0.725   0.812  -0.443 C26 IV5 9  
IV5 C28 C10 C 0 1 N N N -33.612 19.491 -5.660  1.308   3.123  -0.694 C28 IV5 10 
IV5 C01 C11 C 0 1 N N N -23.443 16.973 -11.404 -10.576 -0.702 -0.323 C01 IV5 11 
IV5 C02 C12 C 0 1 N N N -23.230 18.305 -10.644 -9.163  -0.472 0.218  C02 IV5 12 
IV5 C03 C13 C 0 1 N N N -23.325 19.456 -11.643 -9.113  -0.865 1.696  C03 IV5 13 
IV5 C05 C14 C 0 1 N N N -24.361 18.500 -9.570  -8.170  -1.328 -0.570 C05 IV5 14 
IV5 C06 C15 C 0 1 N N N -24.722 17.144 -8.893  -6.777  -1.194 0.050  C06 IV5 15 
IV5 C07 C16 C 0 1 N N N -25.519 17.353 -7.569  -5.784  -2.049 -0.739 C07 IV5 16 
IV5 C08 C17 C 0 1 N N N -25.543 16.072 -6.689  -4.391  -1.916 -0.119 C08 IV5 17 
IV5 C09 C18 C 0 1 N N N -25.414 16.430 -5.189  -3.397  -2.771 -0.907 C09 IV5 18 
IV5 C11 C19 C 0 1 Y N N -26.229 18.655 -4.192  -1.629  -3.511 0.703  C11 IV5 19 
IV5 C12 C20 C 0 1 Y N N -27.273 19.528 -3.847  -0.370  -3.402 1.267  C12 IV5 20 
IV5 C14 C21 C 0 1 Y N N -28.963 17.969 -4.673  0.106   -1.538 -0.174 C14 IV5 21 
IV5 C16 C22 C 0 1 N N N -30.515 17.669 -4.934  1.028   -0.490 -0.640 C16 IV5 22 
IV5 C18 C23 C 0 1 N N N -30.213 15.153 -5.690  3.392   -1.152 -0.293 C18 IV5 23 
IV5 C19 C24 C 0 1 N N N -30.858 14.006 -6.521  4.694   -1.536 -0.999 C19 IV5 24 
IV5 C23 C25 C 0 1 N N N -28.306 10.669 -8.145  8.304   -1.279 1.308  C23 IV5 25 
IV5 C27 C26 C 0 1 N N N -32.869 18.496 -5.183  1.611   1.819  -0.891 C27 IV5 26 
IV5 C29 C27 C 0 1 N N N -35.010 19.320 -5.817  2.231   4.232  -1.158 C29 IV5 27 
IV5 C30 C28 C 0 1 N N R -35.884 20.670 -5.394  2.386   5.241  -0.015 C30 IV5 28 
IV5 C32 C29 C 0 1 N N N -35.410 21.759 -5.926  1.014   5.778  0.392  C32 IV5 29 
IV5 C33 C30 C 0 1 N N S -33.870 21.963 -5.336  0.176   4.650  1.003  C33 IV5 30 
IV5 C35 C31 C 0 1 N N N -33.040 20.955 -5.821  0.060   3.534  -0.022 C35 IV5 31 
IV5 C36 C32 C 0 1 N N N -32.031 21.227 -6.648  -1.108  2.952  -0.299 C36 IV5 32 
IV5 O04 O1  O 0 1 N N N -21.974 18.278 -10.008 -8.819  0.908  0.080  O04 IV5 33 
IV5 O25 O2  O 0 1 N N N -29.999 9.271  -7.070  7.794   -3.636 1.148  O25 IV5 34 
IV5 O31 O3  O 0 1 N N N -35.808 20.774 -3.913  3.211   6.325  -0.448 O31 IV5 35 
IV5 O34 O4  O 0 1 N N N -33.387 23.232 -5.686  0.814   4.162  2.184  O34 IV5 36 
IV5 H1  H1  H 0 1 N N N -29.402 19.885 -3.814  1.482   -2.339 1.276  H1  IV5 37 
IV5 H2  H2  H 0 1 N N N -28.133 16.170 -5.510  -1.479  -0.976 -1.518 H2  IV5 38 
IV5 H3  H3  H 0 1 N N N -31.960 16.398 -5.976  2.145   -1.761 -1.940 H3  IV5 39 
IV5 H4  H4  H 0 1 N N N -31.654 15.922 -4.271  2.630   -0.048 -1.979 H4  IV5 40 
IV5 H5  H5  H 0 1 N N N -29.756 12.989 -8.102  5.456   -2.640 0.686  H5  IV5 41 
IV5 H6  H6  H 0 1 N N N -28.761 13.434 -6.674  5.941   -0.928 0.648  H6  IV5 42 
IV5 H7  H7  H 0 1 N N N -30.885 11.484 -5.985  6.913   -3.096 -1.268 H7  IV5 43 
IV5 H8  H8  H 0 1 N N N -29.115 11.407 -5.683  7.398   -1.384 -1.306 H8  IV5 44 
IV5 H9  H9  H 0 1 N N N -31.773 10.761 -8.331  9.390   -3.611 -0.986 H9  IV5 45 
IV5 H10 H10 H 0 1 N N N -30.582 11.862 -9.102  9.772   -1.874 -0.911 H10 IV5 46 
IV5 H11 H11 H 0 1 N N N -30.605 10.119 -9.535  10.264  -2.951 0.418  H11 IV5 47 
IV5 H12 H12 H 0 1 N N N -30.977 19.713 -4.751  -0.193  1.083  0.056  H12 IV5 48 
IV5 H13 H13 H 0 1 N N N -23.377 16.133 -10.697 -10.611 -0.423 -1.376 H13 IV5 49 
IV5 H14 H14 H 0 1 N N N -24.435 16.976 -11.879 -10.839 -1.755 -0.218 H14 IV5 50 
IV5 H15 H15 H 0 1 N N N -22.668 16.864 -12.176 -11.284 -0.093 0.238  H15 IV5 51 
IV5 H16 H16 H 0 1 N N N -23.176 20.411 -11.118 -9.376  -1.917 1.802  H16 IV5 52 
IV5 H17 H17 H 0 1 N N N -22.550 19.337 -12.414 -8.107  -0.701 2.082  H17 IV5 53 
IV5 H18 H18 H 0 1 N N N -24.318 19.449 -12.117 -9.821  -0.255 2.258  H18 IV5 54 
IV5 H19 H19 H 0 1 N N N -24.011 19.205 -8.801  -8.483  -2.371 -0.538 H19 IV5 55 
IV5 H20 H20 H 0 1 N N N -25.257 18.908 -10.060 -8.140  -0.989 -1.606 H20 IV5 56 
IV5 H21 H21 H 0 1 N N N -25.335 16.551 -9.588  -6.464  -0.151 0.018  H21 IV5 57 
IV5 H22 H22 H 0 1 N N N -23.793 16.600 -8.667  -6.807  -1.533 1.085  H22 IV5 58 
IV5 H23 H23 H 0 1 N N N -25.049 18.167 -6.997  -6.097  -3.093 -0.707 H23 IV5 59 
IV5 H24 H24 H 0 1 N N N -26.554 17.631 -7.819  -5.754  -1.711 -1.774 H24 IV5 60 
IV5 H25 H25 H 0 1 N N N -26.492 15.541 -6.852  -4.078  -0.872 -0.151 H25 IV5 61 
IV5 H26 H26 H 0 1 N N N -24.704 15.421 -6.977  -4.421  -2.255 0.917  H26 IV5 62 
IV5 H27 H27 H 0 1 N N N -25.505 15.514 -4.586  -3.368  -2.432 -1.943 H27 IV5 63 
IV5 H28 H28 H 0 1 N N N -24.433 16.893 -5.007  -3.711  -3.815 -0.875 H28 IV5 64 
IV5 H29 H29 H 0 1 N N N -25.200 18.924 -4.003  -2.306  -4.280 1.045  H29 IV5 65 
IV5 H30 H30 H 0 1 N N N -27.039 20.477 -3.389  -0.067  -4.086 2.046  H30 IV5 66 
IV5 H31 H31 H 0 1 N N N -29.743 14.704 -4.802  3.557   -0.260 0.312  H31 IV5 67 
IV5 H32 H32 H 0 1 N N N -29.441 15.628 -6.313  3.072   -1.972 0.350  H32 IV5 68 
IV5 H33 H33 H 0 1 N N N -31.379 14.429 -7.393  5.014   -0.716 -1.642 H33 IV5 69 
IV5 H34 H34 H 0 1 N N N -31.577 13.456 -5.896  4.529   -2.428 -1.604 H34 IV5 70 
IV5 H35 H35 H 0 1 N N N -27.581 10.461 -7.344  9.075   -1.481 2.051  H35 IV5 71 
IV5 H36 H36 H 0 1 N N N -28.169 9.944  -8.961  8.584   -0.403 0.722  H36 IV5 72 
IV5 H37 H37 H 0 1 N N N -28.146 11.688 -8.528  7.355   -1.092 1.810  H37 IV5 73 
IV5 H38 H38 H 0 1 N N N -33.319 17.537 -4.973  2.530   1.548  -1.390 H38 IV5 74 
IV5 H39 H39 H 0 1 N N N -35.218 19.085 -6.871  3.204   3.816  -1.416 H39 IV5 75 
IV5 H40 H40 H 0 1 N N N -35.333 18.481 -5.183  1.800   4.727  -2.029 H40 IV5 76 
IV5 H41 H41 H 0 1 N N N -36.927 20.486 -5.690  2.851   4.751  0.840  H41 IV5 77 
IV5 H42 H42 H 0 1 N N N -35.384 21.663 -7.022  1.140   6.574  1.126  H42 IV5 78 
IV5 H43 H43 H 0 1 N N N -36.037 22.619 -5.648  0.504   6.174  -0.487 H43 IV5 79 
IV5 H44 H44 H 0 1 N N N -33.944 21.887 -4.241  -0.818  5.024  1.250  H44 IV5 80 
IV5 H45 H45 H 0 1 N N N -31.844 22.245 -6.955  -1.156  2.159  -1.031 H45 IV5 81 
IV5 H46 H46 H 0 1 N N N -31.400 20.429 -7.011  -2.006  3.273  0.208  H46 IV5 82 
IV5 H47 H47 H 0 1 N N N -21.945 17.554 -9.394  -9.408  1.510  0.555  H47 IV5 83 
IV5 H48 H48 H 0 1 N N N -29.384 9.080  -6.372  7.685   -4.441 0.623  H48 IV5 84 
IV5 H49 H49 H 0 1 N N N -36.153 19.980 -3.521  4.101   6.058  -0.717 H49 IV5 85 
IV5 H50 H50 H 0 1 N N N -32.507 23.341 -5.346  0.335   3.445  2.622  H50 IV5 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IV5 C03 C02 SING N N 1  
IV5 C01 C02 SING N N 2  
IV5 C02 O04 SING N N 3  
IV5 C02 C05 SING N N 4  
IV5 C05 C06 SING N N 5  
IV5 C06 C07 SING N N 6  
IV5 C24 C22 SING N N 7  
IV5 C23 C22 SING N N 8  
IV5 C22 O25 SING N N 9  
IV5 C22 C21 SING N N 10 
IV5 C07 C08 SING N N 11 
IV5 C20 C19 SING N N 12 
IV5 C20 C21 SING N N 13 
IV5 C08 C09 SING N N 14 
IV5 C36 C35 DOUB N N 15 
IV5 C19 C18 SING N N 16 
IV5 C32 C30 SING N N 17 
IV5 C32 C33 SING N N 18 
IV5 C35 C28 SING N N 19 
IV5 C35 C33 SING N N 20 
IV5 C29 C28 SING N N 21 
IV5 C29 C30 SING N N 22 
IV5 C18 C17 SING N N 23 
IV5 O34 C33 SING N N 24 
IV5 C28 C27 DOUB N Z 25 
IV5 C30 O31 SING N N 26 
IV5 C17 C16 SING N N 27 
IV5 C09 C10 SING N N 28 
IV5 C27 C26 SING N N 29 
IV5 C15 C10 DOUB Y N 30 
IV5 C15 C14 SING Y N 31 
IV5 C16 C26 DOUB N E 32 
IV5 C16 C14 SING N N 33 
IV5 C10 C11 SING Y N 34 
IV5 C14 C13 DOUB Y N 35 
IV5 C11 C12 DOUB Y N 36 
IV5 C13 C12 SING Y N 37 
IV5 C13 H1  SING N N 38 
IV5 C15 H2  SING N N 39 
IV5 C17 H3  SING N N 40 
IV5 C17 H4  SING N N 41 
IV5 C20 H5  SING N N 42 
IV5 C20 H6  SING N N 43 
IV5 C21 H7  SING N N 44 
IV5 C21 H8  SING N N 45 
IV5 C24 H9  SING N N 46 
IV5 C24 H10 SING N N 47 
IV5 C24 H11 SING N N 48 
IV5 C26 H12 SING N N 49 
IV5 C01 H13 SING N N 50 
IV5 C01 H14 SING N N 51 
IV5 C01 H15 SING N N 52 
IV5 C03 H16 SING N N 53 
IV5 C03 H17 SING N N 54 
IV5 C03 H18 SING N N 55 
IV5 C05 H19 SING N N 56 
IV5 C05 H20 SING N N 57 
IV5 C06 H21 SING N N 58 
IV5 C06 H22 SING N N 59 
IV5 C07 H23 SING N N 60 
IV5 C07 H24 SING N N 61 
IV5 C08 H25 SING N N 62 
IV5 C08 H26 SING N N 63 
IV5 C09 H27 SING N N 64 
IV5 C09 H28 SING N N 65 
IV5 C11 H29 SING N N 66 
IV5 C12 H30 SING N N 67 
IV5 C18 H31 SING N N 68 
IV5 C18 H32 SING N N 69 
IV5 C19 H33 SING N N 70 
IV5 C19 H34 SING N N 71 
IV5 C23 H35 SING N N 72 
IV5 C23 H36 SING N N 73 
IV5 C23 H37 SING N N 74 
IV5 C27 H38 SING N N 75 
IV5 C29 H39 SING N N 76 
IV5 C29 H40 SING N N 77 
IV5 C30 H41 SING N N 78 
IV5 C32 H42 SING N N 79 
IV5 C32 H43 SING N N 80 
IV5 C33 H44 SING N N 81 
IV5 C36 H45 SING N N 82 
IV5 C36 H46 SING N N 83 
IV5 O04 H47 SING N N 84 
IV5 O25 H48 SING N N 85 
IV5 O31 H49 SING N N 86 
IV5 O34 H50 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IV5 InChI            InChI                1.06  "InChI=1S/C32H50O4/c1-24-27(22-29(33)23-30(24)34)18-17-26(15-9-7-11-20-32(4,5)36)28-16-12-14-25(21-28)13-8-6-10-19-31(2,3)35/h12,14,16-18,21,29-30,33-36H,1,6-11,13,15,19-20,22-23H2,2-5H3/b26-17+,27-18-/t29-,30+/m1/s1" 
IV5 InChIKey         InChI                1.06  SQUUCPJJDWEFCT-WWCFBHCMSA-N                                                                                                                                                                                               
IV5 SMILES_CANONICAL CACTVS               3.385 "CC(C)(O)CCCCCc1cccc(c1)C(/CCCCCC(C)(C)O)=C/C=C2/C[C@@H](O)C[C@H](O)C2=C"                                                                                                                                                 
IV5 SMILES           CACTVS               3.385 "CC(C)(O)CCCCCc1cccc(c1)C(CCCCCC(C)(C)O)=CC=C2C[CH](O)C[CH](O)C2=C"                                                                                                                                                       
IV5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(CCCCCc1cccc(c1)/C(=C/C=C\2/C[C@H](C[C@@H](C2=C)O)O)/CCCCCC(C)(C)O)O"                                                                                                                                               
IV5 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(CCCCCc1cccc(c1)C(=CC=C2CC(CC(C2=C)O)O)CCCCCC(C)(C)O)O"                                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           IV5 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1~{R},3~{S},5~{Z})-4-methylidene-5-[(~{E})-9-methyl-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]-9-oxidanyl-dec-2-enylidene]cyclohexane-1,3-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IV5 "Create component"  2022-04-13 PDBE 
IV5 "Modify descriptor" 2022-08-22 RCSB 
IV5 "Initial release"   2022-11-23 RCSB 
# 
