data_DP5
#

_chem_comp.id                                   DP5
_chem_comp.name                                 
;1,4-DIMERCAPTO-ALPHA-D-GLUCOPYRANOSYL-(1-4)-S-1,4-DIMERCAPTO-BETA-D-GLUCOPYRANOSYL-(1-4)-S-1,4-DIMERCAPTO-BETA-D-GLUCOP
 YRANOSE
;

_chem_comp.type                                 saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C18 H32 O12 S4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       568.699
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DP5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1OVW
_chem_comp.pdbx_subcomponent_list               "SSG SGC SGC"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
_chem_comp_atom.pdbx_residue_numbering
_chem_comp_atom.pdbx_polymer_type
_chem_comp_atom.pdbx_component_id
DP5  C1C   C1C   C  0  1  N  N  S   -4.024  69.635  135.503  -0.430  -0.190   6.770  C1   SSG   1  1  polymer  1  
DP5  S1C   S1C   S  0  1  N  Y  N   -3.173  68.192  134.884  -1.176   0.504   8.270  S1   SSG   2  1  polymer  1  
DP5  C2C   C2C   C  0  1  N  N  R   -4.182  70.705  134.526  -1.409  -0.049   5.602  C2   SSG   3  1  polymer  1  
DP5  O2C   O2C   O  0  1  N  N  N   -2.961  71.080  133.934  -2.627  -0.728   5.913  O2   SSG   4  1  polymer  1  
DP5  C3C   C3C   C  0  1  N  N  R   -4.785  71.922  135.287  -0.783  -0.668   4.348  C3   SSG   5  1  polymer  1  
DP5  O3C   O3C   O  0  1  N  N  N   -4.962  72.934  134.353  -1.617  -0.412   3.216  O3   SSG   6  1  polymer  1  
DP5  C4C   C4C   C  0  1  N  N  S   -6.004  71.405  136.024   0.594  -0.035   4.124  C4   SSG   7  1  polymer  1  
DP5  C5C   C5C   C  0  1  N  N  R   -5.659  70.305  136.999   1.423  -0.175   5.403  C5   SSG   8  1  polymer  1  
DP5  O5C   O5C   O  0  1  N  N  N   -5.225  69.206  136.152   0.777   0.508   6.475  O5   SSG   9  1  polymer  1  
DP5  C6C   C6C   C  0  1  N  N  N   -6.746  69.825  137.906   2.812   0.426   5.179  C6   SSG  10  1  polymer  1  
DP5  O6C   O6C   O  0  1  N  N  N   -7.970  69.545  137.380   3.589   0.287   6.371  O6   SSG  11  1  polymer  1  
DP5  S4C   S4C   S  0  1  N  N  N   -6.832  72.861  136.808   1.437  -0.881   2.759  S4   SSG  12  1  polymer  1  
DP5  C1B   C1B   C  0  1  N  N  S   -7.349  73.683  135.215   0.659  -0.051   1.346  C1   SGC  13  2  polymer  1  
DP5  C2B   C2B   C  0  1  N  N  R   -8.586  72.827  134.917   1.552  -0.204   0.112  C2   SGC  14  2  polymer  1  
DP5  O2B   O2B   O  0  1  N  N  N   -8.898  72.757  133.500   2.837   0.361   0.376  O2   SGC  15  2  polymer  1  
DP5  C3B   C3B   C  0  1  N  N  R   -9.805  73.474  135.597   0.902   0.527  -1.067  C3   SGC  16  2  polymer  1  
DP5  O3B   O3B   O  0  1  N  N  N  -10.716  72.494  135.968   1.643   0.270  -2.262  O3   SGC  17  2  polymer  1  
DP5  C4B   C4B   C  0  1  N  N  S   -9.308  74.293  136.797  -0.532   0.015  -1.232  C4   SGC  18  2  polymer  1  
DP5  C5B   C5B   C  0  1  N  N  R   -8.632  75.500  136.213  -1.268   0.149   0.102  C5   SGC  19  2  polymer  1  
DP5  O5B   O5B   O  0  1  N  N  N   -7.481  75.038  135.478  -0.615  -0.639   1.095  O5   SGC  20  2  polymer  1  
DP5  C6B   C6B   C  0  1  N  N  N   -8.159  76.490  137.206  -2.711  -0.331  -0.060  C6   SGC  21  2  polymer  1  
DP5  O6B   O6B   O  0  1  N  N  N   -7.627  75.920  138.333  -3.437  -0.077   1.144  O6   SGC  22  2  polymer  1  
DP5  S4B   S4B   S  0  1  N  N  N  -10.865  75.013  137.443  -1.385   0.996  -2.497  S4   SGC  23  2  polymer  1  
DP5  C1A   C1A   C  0  1  N  N  S  -10.705  75.004  139.257  -0.765   0.185  -3.996  C1   SGC  24  3  polymer  1  
DP5  C2A   C2A   C  0  1  N  N  R  -11.443  76.277  139.668  -1.704   0.492  -5.165  C2   SGC  25  3  polymer  1  
DP5  O2A   O2A   O  0  1  N  N  N  -10.689  77.421  139.301  -3.021   0.031  -4.854  O2   SGC  26  3  polymer  1  
DP5  C3A   C3A   C  0  1  N  N  R  -11.724  76.266  141.164  -1.191  -0.223  -6.420  C3   SGC  27  3  polymer  1  
DP5  O3A   O3A   O  0  1  N  N  N  -12.393  77.434  141.463  -1.971   0.171  -7.550  O3   SGC  28  3  polymer  1  
DP5  C4A   C4A   C  0  1  N  N  S  -12.418  74.970  141.532   0.274   0.166  -6.640  C4   SGC  29  3  polymer  1  
DP5  C5A   C5A   C  0  1  N  N  R  -11.606  73.775  141.126   1.064  -0.116  -5.361  C5   SGC  30  3  polymer  1  
DP5  O5A   O5A   O  0  1  N  N  N  -11.379  73.836  139.721   0.544   0.668  -4.289  O5   SGC  31  3  polymer  1  
DP5  C6A   C6A   C  0  1  N  N  N  -12.277  72.441  141.417   2.536   0.236  -5.583  C6   SGC  32  3  polymer  1  
DP5  O6A   O6A   O  0  1  N  N  N  -13.650  72.482  141.027   3.302  -0.182  -4.452  O6   SGC  33  3  polymer  1  
DP5  S4A   S4A   S  0  1  N  N  N  -12.883  74.772  143.311   0.962  -0.807  -8.007  S4   SGC  34  3  polymer  1  
DP5  H1C   H1C   H  0  1  N  N  N   -3.386  70.140  136.265  -0.208  -1.245   6.931  H1   SSG  35  1  polymer  1  
DP5  HS1C  CHS1  H  0  0  N  N  N   -3.070  67.494  135.520  -0.181   0.285   9.149  H1S  SSG  36  1  polymer  1  
DP5  H2C   H2C   H  0  1  N  N  N   -4.841  70.353  133.698  -1.615   1.006   5.425  H2   SSG  37  1  polymer  1  
DP5  HO2C  CHO2  H  0  0  N  N  N   -3.064  71.777  133.297  -2.987  -0.308   6.707  H2O  SSG  38  1  polymer  1  
DP5  H3C   H3C   H  0  1  N  N  N   -4.147  72.383  136.077  -0.673  -1.743   4.486  H3   SSG  39  1  polymer  1  
DP5  HO3C  CHO3  H  0  0  N  N  N   -5.330  73.676  134.817  -2.495  -0.753   3.434  H3O  SSG  40  1  polymer  1  
DP5  H4C   H4C   H  0  1  N  N  N   -6.714  70.919  135.315   0.476   1.020   3.881  H4   SSG  41  1  polymer  1  
DP5  H5C   H5C   H  0  1  N  N  N   -4.903  70.705  137.714   1.522  -1.231   5.654  H5   SSG  42  1  polymer  1  
DP5  H6C2  2H6C  H  0  0  N  N  N   -6.871  70.559  138.735   2.715   1.482   4.930  H62  SSG  43  1  polymer  1  
DP5  H6C1  1H6C  H  0  0  N  N  N   -6.380  68.929  138.461   3.307  -0.095   4.360  H61  SSG  44  1  polymer  1  
DP5  HO6C  CHO6  H  0  0  N  N  N   -8.660  69.240  137.956   4.454   0.677   6.187  H6   SSG  45  1  polymer  1  
DP5  H1B   H1B   H  0  1  N  N  N   -6.688  73.705  134.317   0.532   1.007   1.572  H1   SGC  46  2  polymer  1  
DP5  H2B   H2B   H  0  1  N  N  N   -8.364  71.800  135.291   1.662  -1.261  -0.129  H2   SGC  47  2  polymer  1  
DP5  HO2B  BHO2  H  0  0  N  N  N   -9.664  72.226  133.315   3.209  -0.126   1.123  H2O  SGC  48  2  polymer  1  
DP5  H3B   H3B   H  0  1  N  N  N  -10.336  74.159  134.896   0.887   1.599  -0.869  H3   SGC  49  2  polymer  1  
DP5  HO3B  BHO3  H  0  0  N  N  N  -11.468  72.893  136.387   2.518   0.665  -2.138  H3O  SGC  50  2  polymer  1  
DP5  H4B   H4B   H  0  1  N  N  N   -8.677  73.714  137.511  -0.513  -1.032  -1.534  H4   SGC  51  2  polymer  1  
DP5  H5B   H5B   H  0  1  N  N  N   -9.393  76.019  135.585  -1.267   1.194   0.411  H5   SGC  52  2  polymer  1  
DP5  H6B2  2H6B  H  0  0  N  N  N   -8.973  77.204  137.471  -2.717  -1.401  -0.269  H62  SGC  53  2  polymer  1  
DP5  H6B1  1H6B  H  0  0  N  N  N   -7.434  77.199  136.742  -3.181   0.202  -0.886  H61  SGC  54  2  polymer  1  
DP5  HO6B  BHO6  H  0  0  N  N  N   -7.323  76.555  138.970  -4.339  -0.394   0.999  H6   SGC  55  2  polymer  1  
DP5  H1A   H1A   H  0  1  N  N  N   -9.664  74.984  139.657  -0.726  -0.892  -3.836  H1   SGC  56  3  polymer  1  
DP5  H2A   H2A   H  0  1  N  N  N  -12.420  76.317  139.132  -1.727   1.567  -5.342  H2   SGC  57  3  polymer  1  
DP5  HO2A  AHO2  H  0  0  N  N  N  -11.147  78.212  139.556  -3.301   0.501  -4.057  H2O  SGC  58  3  polymer  1  
DP5  H3A   H3A   H  0  1  N  N  N  -10.806  76.267  141.797  -1.267  -1.302  -6.282  H3   SGC  59  3  polymer  1  
DP5  HO3A  AHO3  H  0  0  N  N  N  -12.568  77.427  142.396  -2.885  -0.082  -7.361  H3O  SGC  60  3  polymer  1  
DP5  H4A   H4A   H  0  1  N  N  N  -13.372  75.031  140.959   0.336   1.228  -6.881  H4   SGC  61  3  polymer  1  
DP5  H5A   H5A   H  0  1  N  N  N  -10.666  73.818  141.724   0.979  -1.174  -5.109  H5   SGC  62  3  polymer  1  
DP5  H6A2  2H6A  H  0  0  N  N  N  -12.156  72.138  142.483   2.900  -0.269  -6.476  H62  SGC  63  3  polymer  1  
DP5  H6A1  1H6A  H  0  0  N  N  N  -11.734  71.590  140.942   2.635   1.314  -5.710  H61  SGC  64  3  polymer  1  
DP5  HO6A  AHO6  H  0  0  N  N  N  -14.069  71.649  141.208   4.221   0.058  -4.632  H6   SGC  65  3  polymer  1  
DP5  HS4A  AHS4  H  0  0  N  N  N  -13.318  73.959  143.541   0.140  -0.427  -9.002  H4S  SGC  66  3  polymer  1  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DP5  C1A  C2A   SING  N  N   1  
DP5  C1A  O5A   SING  N  N   2  
DP5  C1A  S4B   SING  N  N   3  
DP5  C1A  H1A   SING  N  N   4  
DP5  C2A  C3A   SING  N  N   5  
DP5  C2A  O2A   SING  N  N   6  
DP5  C2A  H2A   SING  N  N   7  
DP5  C3A  C4A   SING  N  N   8  
DP5  C3A  O3A   SING  N  N   9  
DP5  C3A  H3A   SING  N  N  10  
DP5  C4A  C5A   SING  N  N  11  
DP5  C4A  S4A   SING  N  N  12  
DP5  C4A  H4A   SING  N  N  13  
DP5  C5A  C6A   SING  N  N  14  
DP5  C5A  O5A   SING  N  N  15  
DP5  C5A  H5A   SING  N  N  16  
DP5  C6A  O6A   SING  N  N  17  
DP5  C6A  H6A1  SING  N  N  18  
DP5  C6A  H6A2  SING  N  N  19  
DP5  O2A  HO2A  SING  N  N  20  
DP5  O3A  HO3A  SING  N  N  21  
DP5  S4A  HS4A  SING  N  N  22  
DP5  O6A  HO6A  SING  N  N  23  
DP5  C1B  C2B   SING  N  N  24  
DP5  C1B  O5B   SING  N  N  25  
DP5  C1B  S4C   SING  N  N  26  
DP5  C1B  H1B   SING  N  N  27  
DP5  C2B  C3B   SING  N  N  28  
DP5  C2B  O2B   SING  N  N  29  
DP5  C2B  H2B   SING  N  N  30  
DP5  C3B  C4B   SING  N  N  31  
DP5  C3B  O3B   SING  N  N  32  
DP5  C3B  H3B   SING  N  N  33  
DP5  C4B  C5B   SING  N  N  34  
DP5  C4B  S4B   SING  N  N  35  
DP5  C4B  H4B   SING  N  N  36  
DP5  C5B  C6B   SING  N  N  37  
DP5  C5B  O5B   SING  N  N  38  
DP5  C5B  H5B   SING  N  N  39  
DP5  C6B  O6B   SING  N  N  40  
DP5  C6B  H6B1  SING  N  N  41  
DP5  C6B  H6B2  SING  N  N  42  
DP5  O2B  HO2B  SING  N  N  43  
DP5  O3B  HO3B  SING  N  N  44  
DP5  O6B  HO6B  SING  N  N  45  
DP5  C1C  C2C   SING  N  N  46  
DP5  C1C  S1C   SING  N  N  47  
DP5  C1C  O5C   SING  N  N  48  
DP5  C1C  H1C   SING  N  N  49  
DP5  C2C  C3C   SING  N  N  50  
DP5  C2C  O2C   SING  N  N  51  
DP5  C2C  H2C   SING  N  N  52  
DP5  C3C  C4C   SING  N  N  53  
DP5  C3C  O3C   SING  N  N  54  
DP5  C3C  H3C   SING  N  N  55  
DP5  C4C  C5C   SING  N  N  56  
DP5  C4C  S4C   SING  N  N  57  
DP5  C4C  H4C   SING  N  N  58  
DP5  C5C  C6C   SING  N  N  59  
DP5  C5C  O5C   SING  N  N  60  
DP5  C5C  H5C   SING  N  N  61  
DP5  C6C  O6C   SING  N  N  62  
DP5  C6C  H6C1  SING  N  N  63  
DP5  C6C  H6C2  SING  N  N  64  
DP5  S1C  HS1C  SING  N  N  65  
DP5  O2C  HO2C  SING  N  N  66  
DP5  O3C  HO3C  SING  N  N  67  
DP5  O6C  HO6C  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DP5  SMILES            ACDLabs               10.04  "S(C1C(OC(S)C(O)C1O)CO)C3OC(C(SC2OC(CO)C(S)C(O)C2O)C(O)C3O)CO"  
DP5  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@@H](S[C@H]2[C@H](O)[C@@H](O)[C@@H](O[C@@H]2CO)S[C@H]3[C@H](O)[C@@H](O)[C@H](S)O[C@@H]3CO)[C@H](O)[C@@H](O)[C@@H]1S"  
DP5  SMILES            CACTVS                3.341  "OC[CH]1O[CH](S[CH]2[CH](O)[CH](O)[CH](O[CH]2CO)S[CH]3[CH](O)[CH](O)[CH](S)O[CH]3CO)[CH](O)[CH](O)[CH]1S"  
DP5  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)S[C@@H]2[C@H](O[C@H]([C@@H]([C@H]2O)O)S[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)O)S)CO)CO)O)O)S)O"  
DP5  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(C(O1)SC2C(OC(C(C2O)O)SC3C(OC(C(C3O)O)S)CO)CO)O)O)S)O"  
DP5  InChI             InChI                 1.03   "InChI=1S/C18H32O12S4/c19-1-4-13(31)7(22)11(26)17(29-4)34-15-6(3-21)30-18(12(27)9(15)24)33-14-5(2-20)28-16(32)10(25)8(14)23/h4-27,31-32H,1-3H2/t4-,5-,6-,7-,8-,9-,10-,11-,12-,13-,14-,15-,16+,17+,18+/m1/s1"  
DP5  InChIKey          InChI                 1.03   WBVXJPVNEKGLBK-FBMSAYSMSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DP5  "SYSTEMATIC NAME"  ACDLabs               10.04  "4-thio-beta-D-glucopyranosyl-(1->4)-4-thio-beta-D-glucopyranosyl-(1->4)-1,4-dithio-beta-D-glucopyranose"  
DP5  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3R,4R,5S,6R)-2-[(2R,3S,4R,5R,6S)-6-[(2R,3S,4R,5R,6S)-4,5-dihydroxy-2-(hydroxymethyl)-6-sulfanyl-oxan-3-yl]sulfanyl-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]sulfanyl-6-(hydroxymethyl)-5-sulfanyl-oxane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DP5  "Create component"    1999-07-08  RCSB  
DP5  "Modify descriptor"   2011-06-04  RCSB  
DP5  "Other modification"  2020-07-03  RCSB  
DP5  "Obsolete component"  2020-07-17  RCSB  
##
