data_XG4
# 
_chem_comp.id                                    XG4 
_chem_comp.name                                  "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H17 N6 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-06-21 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        506.196 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XG4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3MR5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XG4 N1     N1   N 0 1 N N N -43.764 -4.706 -7.654  7.571  2.016  -0.396 N1   XG4 1  
XG4 C2     C2   C 0 1 N N N -44.195 -5.752 -8.443  7.482  0.699  -0.737 C2   XG4 2  
XG4 N2     N2   N 0 1 N N N -43.292 -6.719 -8.826  8.598  0.058  -1.213 N2   XG4 3  
XG4 N3     N3   N 0 1 N N N -45.469 -5.867 -8.843  6.359  0.026  -0.622 N3   XG4 4  
XG4 C4     C4   C 0 1 Y N N -46.387 -4.925 -8.479  5.247  0.610  -0.163 C4   XG4 5  
XG4 C5     C5   C 0 1 Y N N -46.011 -3.833 -7.659  5.273  1.961  0.204  C5   XG4 6  
XG4 C6     C6   C 0 1 N N N -44.645 -3.735 -7.268  6.488  2.673  0.075  C6   XG4 7  
XG4 O6     O6   O 0 1 N N N -44.241 -2.782 -6.561  6.558  3.850  0.388  O6   XG4 8  
XG4 N7     N7   N 0 1 Y N N -47.115 -3.062 -7.456  4.027  2.287  0.627  N7   XG4 9  
XG4 C8     C8   C 0 1 Y N N -48.134 -3.624 -8.076  3.257  1.242  0.544  C8   XG4 10 
XG4 N9     N9   N 0 1 Y N N -47.743 -4.780 -8.720  3.967  0.181  0.062  N9   XG4 11 
XG4 PA     PA   P 0 1 N N N -52.286 -2.388 -8.365  -2.354 -1.940 -0.630 PA   XG4 12 
XG4 PB     PB   P 0 1 N N N -53.861 -4.513 -6.994  -4.415 -0.124 -0.237 PB   XG4 13 
XG4 PG     PG   P 0 1 N N N -55.943 -3.013 -5.940  -6.113 2.243  0.307  PG   XG4 14 
XG4 "C1'"  C1*  C 0 1 N N R -48.536 -5.735 -9.544  3.452  -1.171 -0.175 C1*  XG4 15 
XG4 O1A    O1A  O 0 1 N N N -53.331 -2.067 -9.091  -2.953 -2.853 0.369  O1A  XG4 16 
XG4 O1B    O1B  O 0 1 N N N -54.348 -4.668 -8.134  -4.959 -0.434 -1.578 O1B  XG4 17 
XG4 O1G    O1G  O 0 1 N N N -55.850 -2.331 -7.086  -7.083 1.452  1.096  O1G  XG4 18 
XG4 "C2'"  C2*  C 0 1 N N N -49.285 -6.711 -8.584  3.743  -2.063 1.048  C2*  XG4 19 
XG4 O2A    O2A  O 0 1 N N N -51.497 -1.355 -7.897  -2.928 -2.293 -2.092 O2A  XG4 20 
XG4 O2B    O2B  O 0 1 N N N -53.223 -5.553 -6.608  -5.084 -1.102 0.853  O2B  XG4 21 
XG4 O2G    O2G  O 0 1 N N N -57.168 -3.514 -5.711  -5.801 3.627  1.069  O2G  XG4 22 
XG4 "C3'"  C3*  C 0 1 N N S -50.707 -6.240 -8.582  2.345  -2.549 1.504  C3*  XG4 23 
XG4 "O3'"  O3*  O 0 1 N N N -51.696 -7.131 -8.306  2.382  -3.927 1.879  O3*  XG4 24 
XG4 N3A    N3A  N 0 1 N N N -52.758 -3.266 -7.141  -2.747 -0.350 -0.243 N3A  XG4 25 
XG4 O3B    O3B  O 0 1 N N N -54.902 -4.153 -5.931  -4.748 1.405  0.138  O3B  XG4 26 
XG4 O3G    O3G  O 0 1 N N N -55.628 -2.192 -4.932  -6.732 2.559  -1.145 O3G  XG4 27 
XG4 "C4'"  C4*  C 0 1 N N R -50.740 -5.593 -9.959  1.497  -2.347 0.222  C4*  XG4 28 
XG4 "O4'"  O4*  O 0 1 N N N -49.479 -5.169 -10.294 2.025  -1.128 -0.343 O4*  XG4 29 
XG4 "C5'"  C5*  C 0 1 N N N -51.722 -4.382 -9.922  0.018  -2.181 0.575  C5*  XG4 30 
XG4 "O5'"  O5*  O 0 1 N N N -51.297 -3.227 -9.200  -0.754 -2.114 -0.625 O5*  XG4 31 
XG4 HN1    HN1  H 0 1 N N N -42.808 -4.658 -7.365  8.416  2.483  -0.489 HN1  XG4 32 
XG4 HN2    HN2  H 0 1 N N N -43.592 -7.487 -9.391  9.434  0.541  -1.303 HN2  XG4 33 
XG4 HN2A   HN2A H 0 0 N N N -42.336 -6.653 -8.539  8.551  -0.879 -1.460 HN2A XG4 34 
XG4 H8     H8   H 0 1 N N N -49.140 -3.232 -8.079  2.212  1.217  0.817  H8   XG4 35 
XG4 "H1'"  H1*  H 0 1 N N N -47.811 -6.222 -10.212 3.920  -1.595 -1.063 H1*  XG4 36 
XG4 "H2'"  H2*  H 0 1 N N N -49.214 -7.748 -8.943  4.367  -2.910 0.762  H2*  XG4 37 
XG4 "H2'A" H2*A H 0 0 N N N -48.856 -6.673 -7.572  4.222  -1.484 1.837  H2*A XG4 38 
XG4 HO2A   HO2A H 0 0 N N N -51.854 -0.525 -8.190  -2.578 -1.732 -2.798 HO2A XG4 39 
XG4 HO2B   HO2B H 0 0 N N N -53.263 -6.219 -7.284  -4.773 -0.955 1.757  HO2B XG4 40 
XG4 HO2G   HO2G H 0 0 N N N -57.746 -3.280 -6.428  -6.580 4.184  1.206  HO2G XG4 41 
XG4 "H3'"  H3*  H 0 1 N N N -50.948 -5.583 -7.734  1.968  -1.935 2.321  H3*  XG4 42 
XG4 "HO3'" HO3* H 0 0 N N N -52.538 -6.692 -8.341  2.972  -4.117 2.622  HO3* XG4 43 
XG4 HN3A   HN3A H 0 0 N N N -51.906 -3.700 -6.849  -2.343 -0.083 0.643  HN3A XG4 44 
XG4 HO3G   HO3G H 0 0 N N N -55.417 -1.332 -5.277  -6.149 3.075  -1.718 HO3G XG4 45 
XG4 "H4'"  H4*  H 0 1 N N N -51.082 -6.319 -10.711 1.635  -3.182 -0.465 H4*  XG4 46 
XG4 "H5'"  H5*  H 0 1 N N N -51.887 -4.069 -10.963 -0.311 -3.032 1.171  H5*  XG4 47 
XG4 "H5'A" H5*A H 0 0 N N N -52.651 -4.734 -9.449  -0.118 -1.263 1.147  H5*A XG4 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XG4 C2    N1     SING N N 1  
XG4 N1    C6     SING N N 2  
XG4 N1    HN1    SING N N 3  
XG4 N3    C2     DOUB N N 4  
XG4 N2    C2     SING N N 5  
XG4 N2    HN2    SING N N 6  
XG4 N2    HN2A   SING N N 7  
XG4 N3    C4     SING N N 8  
XG4 N9    C4     SING Y N 9  
XG4 C4    C5     DOUB Y N 10 
XG4 C5    N7     SING Y N 11 
XG4 C5    C6     SING N N 12 
XG4 C6    O6     DOUB N N 13 
XG4 C8    N7     DOUB Y N 14 
XG4 N9    C8     SING Y N 15 
XG4 C8    H8     SING N N 16 
XG4 "C1'" N9     SING N N 17 
XG4 "O5'" PA     SING N N 18 
XG4 O1A   PA     DOUB N N 19 
XG4 PA    O2A    SING N N 20 
XG4 PA    N3A    SING N N 21 
XG4 O1B   PB     DOUB N N 22 
XG4 N3A   PB     SING N N 23 
XG4 PB    O2B    SING N N 24 
XG4 PB    O3B    SING N N 25 
XG4 O1G   PG     DOUB N N 26 
XG4 PG    O3B    SING N N 27 
XG4 PG    O2G    SING N N 28 
XG4 PG    O3G    SING N N 29 
XG4 "O4'" "C1'"  SING N N 30 
XG4 "C1'" "C2'"  SING N N 31 
XG4 "C1'" "H1'"  SING N N 32 
XG4 "C2'" "C3'"  SING N N 33 
XG4 "C2'" "H2'"  SING N N 34 
XG4 "C2'" "H2'A" SING N N 35 
XG4 O2A   HO2A   SING N N 36 
XG4 O2B   HO2B   SING N N 37 
XG4 O2G   HO2G   SING N N 38 
XG4 "C4'" "C3'"  SING N N 39 
XG4 "C3'" "O3'"  SING N N 40 
XG4 "C3'" "H3'"  SING N N 41 
XG4 "O3'" "HO3'" SING N N 42 
XG4 N3A   HN3A   SING N N 43 
XG4 O3G   HO3G   SING N N 44 
XG4 "O4'" "C4'"  SING N N 45 
XG4 "C4'" "C5'"  SING N N 46 
XG4 "C4'" "H4'"  SING N N 47 
XG4 "C5'" "O5'"  SING N N 48 
XG4 "C5'" "H5'"  SING N N 49 
XG4 "C5'" "H5'A" SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XG4 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)NP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O"                                                                                                                                         
XG4 SMILES_CANONICAL CACTVS               3.370 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                  
XG4 SMILES           CACTVS               3.370 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                      
XG4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@@](=O)(N[P@@](=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N"                                                                                                                
XG4 SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N"                                                                                                                                     
XG4 InChI            InChI                1.03  "InChI=1S/C10H17N6O12P3/c11-10-13-8-7(9(18)14-10)12-3-16(8)6-1-4(17)5(27-6)2-26-29(19,20)15-30(21,22)28-31(23,24)25/h3-6,17H,1-2H2,(H2,23,24,25)(H3,11,13,14,18)(H3,15,19,20,21,22)/t4-,5+,6+/m0/s1" 
XG4 InChIKey         InChI                1.03  DWGAAFQEGIMTIA-KVQBGUIXSA-N                                                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XG4 "SYSTEMATIC NAME" ACDLabs              12.01 "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine"                                        
XG4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-N-[hydroxy(phosphonooxy)phosphoryl]phosphonamidic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XG4 "Create component"     2010-06-21 RCSB 
XG4 "Modify aromatic_flag" 2011-06-04 RCSB 
XG4 "Modify descriptor"    2011-06-04 RCSB 
# 
