data_XF4
#

_chem_comp.id                                   XF4
_chem_comp.name                                 "(5S)-5-{3-[3-(benzyloxy)-5-chlorophenyl]-2-oxo[2H-[1,3'-bipyridine]]-5-yl}pyrimidine-2,4(3H,5H)-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H19 Cl N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-15
_chem_comp.pdbx_modified_date                   2021-02-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       498.917
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XF4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7L12
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XF4  C1    C1   C   0  1  N  N  N  -13.867  -26.903   1.012  -0.961   1.403  -0.520  C1    XF4   1  
XF4  C2    C2   C   0  1  N  N  N  -14.182  -28.874  -0.272  -1.673  -0.828   0.067  C2    XF4   2  
XF4  C3    C3   C   0  1  N  N  N  -14.693  -27.647   0.162  -0.682   0.021  -0.394  C3    XF4   3  
XF4  C4    C4   C   0  1  Y  N  N  -16.070  -27.165  -0.299   0.655  -0.510  -0.750  C4    XF4   4  
XF4  C5    C5   C   0  1  Y  N  N  -17.114  -28.096  -0.429   0.794  -1.392  -1.821  C5    XF4   5  
XF4  C6    C6   C   0  1  Y  N  N  -11.792  -26.570   2.340  -2.432   3.253  -0.323  C6    XF4   6  
XF4  C7    C7   C   0  1  Y  N  N  -18.382  -27.682  -0.862   2.041  -1.885  -2.151  C7    XF4   7  
XF4  C8    C8   C   0  1  Y  N  N  -18.603  -26.332  -1.156   3.154  -1.505  -1.422  C8    XF4   8  
XF4  C9    C9   C   0  1  Y  N  N  -17.567  -25.400  -1.022   3.024  -0.627  -0.355  C9    XF4   9  
XF4  C10   C10  C   0  1  N  N  N  -16.908  -23.073  -0.905   5.374  -0.810  -0.046  C10   XF4  10  
XF4  C11   C11  C   0  1  Y  N  N  -17.615  -21.786  -1.304   6.465  -0.290   0.854  C11   XF4  11  
XF4  C12   C12  C   0  1  Y  N  N  -16.304  -25.819  -0.591   1.777  -0.124  -0.020  C12   XF4  12  
XF4  C13   C13  C   0  1  Y  N  N  -12.163  -26.548   3.690  -3.273   3.724  -1.322  C13   XF4  13  
XF4  C14   C14  C   0  1  Y  N  N  -10.246  -25.174   4.172  -2.986   5.901  -0.626  C14   XF4  14  
XF4  C15   C15  C   0  1  Y  N  N   -9.879  -25.199   2.821  -2.139   5.510   0.394  C15   XF4  15  
XF4  C16   C16  C   0  1  Y  N  N  -10.651  -25.907   1.893  -1.851   4.164   0.556  C16   XF4  16  
XF4  C17   C17  C   0  1  N  N  N  -12.106  -28.554   1.017  -3.159   1.058   0.251  C17   XF4  17  
XF4  C18   C18  C   0  1  N  N  N  -12.918  -29.316   0.168  -2.933  -0.292   0.397  C18   XF4  18  
XF4  C24   C19  C   0  1  N  N  N  -12.391  -30.659  -0.342  -4.015  -1.179   0.892  C24   XF4  19  
XF4  C25   C20  C   0  1  N  N  N  -12.714  -30.983  -1.665  -4.491  -1.056   2.163  C25   XF4  20  
XF4  C26   C21  C   0  1  N  N  N  -11.600  -31.553   0.412  -4.602  -2.207   0.023  C26   XF4  21  
XF4  C30   C22  C   0  1  N  N  N  -11.507  -33.044  -1.479  -6.010  -2.826   1.783  C30   XF4  22  
XF4  C32   C23  C   0  1  Y  N  N  -18.791  -21.408  -0.642   6.796  -0.977   2.007  C32   XF4  23  
XF4  C33   C24  C   0  1  Y  N  N  -19.467  -20.237  -1.011   7.797  -0.499   2.832  C33   XF4  24  
XF4  C34   C25  C   0  1  Y  N  N  -18.985  -19.451  -2.060   8.467   0.665   2.505  C34   XF4  25  
XF4  C35   C26  C   0  1  Y  N  N  -17.821  -19.831  -2.737   8.136   1.351   1.352  C35   XF4  26  
XF4  C36   C27  C   0  1  Y  N  N  -17.143  -20.993  -2.349   7.139   0.871   0.523  C36   XF4  27  
XF4  N19   N1   N   0  1  N  N  N  -12.621  -27.329   1.430  -2.176   1.882  -0.196  N19   XF4  28  
XF4  N20   N2   N   0  1  Y  N  N  -11.385  -25.845   4.619  -3.521   5.013  -1.441  N20   XF4  29  
XF4  N28   N3   N   0  1  N  N  N  -11.177  -32.735  -0.169  -5.584  -2.990   0.518  N28   XF4  30  
XF4  N29   N4   N   0  1  N  N  N  -12.278  -32.171  -2.236  -5.488  -1.888   2.591  N29   XF4  31  
XF4  O21   O1   O   0  1  N  N  N  -14.343  -25.684   1.444  -0.095   2.164  -0.920  O21   XF4  32  
XF4  O22   O2   O   0  1  N  N  N  -17.823  -24.056  -1.317   4.120  -0.257   0.358  O22   XF4  33  
XF4  O27   O3   O   0  1  N  N  N  -11.234  -31.335   1.641  -4.213  -2.349  -1.121  O27   XF4  34  
XF4  O31   O4   O   0  1  N  N  N  -11.085  -34.157  -1.999  -6.895  -3.544   2.206  O31   XF4  35  
XF4  CL23  CL1  CL  0  0  N  N  N  -19.711  -28.862  -1.068   2.213  -2.984  -3.484  CL23  XF4  36  
XF4  H1    H1   H   0  1  N  N  N  -14.759  -29.487  -0.948  -1.483  -1.887   0.171  H1    XF4  37  
XF4  H2    H2   H   0  1  N  N  N  -16.939  -29.136  -0.194  -0.073  -1.691  -2.391  H2    XF4  38  
XF4  H3    H3   H   0  1  N  N  N  -19.578  -26.007  -1.488   4.127  -1.896  -1.681  H3    XF4  39  
XF4  H4    H4   H   0  1  N  N  N  -16.740  -23.115   0.181   5.583  -0.521  -1.076  H4    XF4  40  
XF4  H5    H5   H   0  1  N  N  N  -15.947  -23.179  -1.429   5.331  -1.897   0.026  H5    XF4  41  
XF4  H6    H6   H   0  1  N  N  N  -15.506  -25.099  -0.483   1.675   0.560   0.810  H6    XF4  42  
XF4  H7    H7   H   0  1  N  N  N  -13.049  -27.073   4.015  -3.730   3.026  -2.009  H7    XF4  43  
XF4  H8    H8   H   0  1  N  N  N   -9.639  -24.627   4.878  -3.214   6.949  -0.756  H8    XF4  44  
XF4  H9    H9   H   0  1  N  N  N   -8.996  -24.670   2.494  -1.706   6.244   1.057  H9    XF4  45  
XF4  H10   H10  H   0  1  N  N  N  -10.368  -25.939   0.851  -1.192   3.830   1.344  H10   XF4  46  
XF4  H11   H11  H   0  1  N  N  N  -11.133  -28.898   1.334  -4.125   1.467   0.504  H11   XF4  47  
XF4  H13   H13  H   0  1  N  N  N  -13.311  -30.299  -2.250  -4.084  -0.308   2.827  H13   XF4  48  
XF4  H14   H14  H   0  1  N  N  N  -19.179  -22.023   0.157   6.273  -1.886   2.263  H14   XF4  49  
XF4  H15   H15  H   0  1  N  N  N  -20.362  -19.942  -0.483   8.056  -1.036   3.734  H15   XF4  50  
XF4  H16   H16  H   0  1  N  N  N  -19.510  -18.552  -2.348   9.249   1.038   3.150  H16   XF4  51  
XF4  H17   H17  H   0  1  N  N  N  -17.448  -19.232  -3.554   8.663   2.258   1.093  H17   XF4  52  
XF4  H18   H18  H   0  1  N  N  N  -16.240  -21.280  -2.868   6.880   1.407  -0.378  H18   XF4  53  
XF4  H19   H19  H   0  1  N  N  N  -10.625  -33.376   0.364  -5.981  -3.677  -0.040  H19   XF4  54  
XF4  H12   H12  H   0  1  N  N  N  -12.516  -32.396  -3.181  -5.825  -1.800   3.496  H12   XF4  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XF4  C35   C36  DOUB  Y  N   1  
XF4  C35   C34  SING  Y  N   2  
XF4  C36   C11  SING  Y  N   3  
XF4  N29   C25  SING  N  N   4  
XF4  N29   C30  SING  N  N   5  
XF4  C34   C33  DOUB  Y  N   6  
XF4  O31   C30  DOUB  N  N   7  
XF4  C25   C24  DOUB  N  N   8  
XF4  C30   N28  SING  N  N   9  
XF4  O22   C9   SING  N  N  10  
XF4  O22   C10  SING  N  N  11  
XF4  C11   C10  SING  N  N  12  
XF4  C11   C32  DOUB  Y  N  13  
XF4  C8    C9   DOUB  Y  N  14  
XF4  C8    C7   SING  Y  N  15  
XF4  CL23  C7   SING  N  N  16  
XF4  C9    C12  SING  Y  N  17  
XF4  C33   C32  SING  Y  N  18  
XF4  C7    C5   DOUB  Y  N  19  
XF4  C12   C4   DOUB  Y  N  20  
XF4  C5    C4   SING  Y  N  21  
XF4  C24   C18  SING  N  N  22  
XF4  C24   C26  SING  N  N  23  
XF4  C4    C3   SING  N  N  24  
XF4  C2    C3   DOUB  N  N  25  
XF4  C2    C18  SING  N  N  26  
XF4  N28   C26  SING  N  N  27  
XF4  C3    C1   SING  N  N  28  
XF4  C18   C17  DOUB  N  N  29  
XF4  C26   O27  DOUB  N  N  30  
XF4  C1    N19  SING  N  N  31  
XF4  C1    O21  DOUB  N  N  32  
XF4  C17   N19  SING  N  N  33  
XF4  N19   C6   SING  N  N  34  
XF4  C16   C6   DOUB  Y  N  35  
XF4  C16   C15  SING  Y  N  36  
XF4  C6    C13  SING  Y  N  37  
XF4  C15   C14  DOUB  Y  N  38  
XF4  C13   N20  DOUB  Y  N  39  
XF4  C14   N20  SING  Y  N  40  
XF4  C2    H1   SING  N  N  41  
XF4  C5    H2   SING  N  N  42  
XF4  C8    H3   SING  N  N  43  
XF4  C10   H4   SING  N  N  44  
XF4  C10   H5   SING  N  N  45  
XF4  C12   H6   SING  N  N  46  
XF4  C13   H7   SING  N  N  47  
XF4  C14   H8   SING  N  N  48  
XF4  C15   H9   SING  N  N  49  
XF4  C16   H10  SING  N  N  50  
XF4  C17   H11  SING  N  N  51  
XF4  C25   H13  SING  N  N  52  
XF4  C32   H14  SING  N  N  53  
XF4  C33   H15  SING  N  N  54  
XF4  C34   H16  SING  N  N  55  
XF4  C35   H17  SING  N  N  56  
XF4  C36   H18  SING  N  N  57  
XF4  N28   H19  SING  N  N  58  
XF4  N29   H12  SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XF4  SMILES            ACDLabs               12.01  "C2(N(c1cnccc1)C=C(C=C2c3cc(cc(c3)OCc4ccccc4)Cl)C=5C(=O)NC(NC=5)=O)=O"  
XF4  InChI             InChI                 1.03   "InChI=1S/C27H19ClN4O4/c28-20-9-18(10-22(12-20)36-16-17-5-2-1-3-6-17)23-11-19(24-14-30-27(35)31-25(24)33)15-32(26(23)34)21-7-4-8-29-13-21/h1-15H,16H2,(H2,30,31,33,35)"  
XF4  InChIKey          InChI                 1.03   IVPUTCRGJCQUQU-UHFFFAOYSA-N  
XF4  SMILES_CANONICAL  CACTVS                3.385  "Clc1cc(OCc2ccccc2)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
XF4  SMILES            CACTVS                3.385  "Clc1cc(OCc2ccccc2)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
XF4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
XF4  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XF4  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-{3-[3-(benzyloxy)-5-chlorophenyl]-2-oxo[2H-[1,3'-bipyridine]]-5-yl}pyrimidine-2,4(1H,3H)-dione"  
XF4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[5-(3-chloranyl-5-phenylmethoxy-phenyl)-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XF4  "Create component"   2020-12-15  RCSB  
XF4  "Modify descriptor"  2020-12-16  RCSB  
XF4  "Initial release"    2021-03-03  RCSB  
##
