data_WP4
#

_chem_comp.id                                   WP4
_chem_comp.name                                 "(3R)-N-benzylpyrrolidin-3-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H16 N2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-02
_chem_comp.pdbx_modified_date                   2020-11-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       176.258
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    WP4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5RX2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WP4  C10  C1   C  0  1  Y  N  N  -27.554   -7.990  -18.980  -3.734  -1.130   0.047  C10  WP4   1  
WP4  C13  C2   C  0  1  Y  N  N  -28.135   -8.777  -21.558  -2.249   1.202   0.066  C13  WP4   2  
WP4  C01  C3   C  0  1  N  N  N  -30.509   -9.530  -20.879  -0.289   0.036  -0.965  C01  WP4   3  
WP4  C03  C4   C  0  1  N  N  R  -32.556   -8.082  -20.668   2.031  -0.292  -0.356  C03  WP4   4  
WP4  C04  C5   C  0  1  N  N  N  -33.399   -9.098  -19.901   2.914  -1.191   0.540  C04  WP4   5  
WP4  C05  C6   C  0  1  N  N  N  -34.690   -8.253  -19.542   4.251  -0.439   0.672  C05  WP4   6  
WP4  C07  C7   C  0  1  N  N  N  -33.514   -7.448  -21.458   2.682   1.105  -0.192  C07  WP4   7  
WP4  C08  C8   C  0  1  Y  N  N  -29.090   -8.904  -20.564  -1.700   0.037  -0.435  C08  WP4   8  
WP4  C09  C9   C  0  1  Y  N  N  -28.787   -8.507  -19.262  -2.442  -1.129  -0.444  C09  WP4   9  
WP4  C11  C10  C  0  1  Y  N  N  -26.597   -7.850  -19.977  -4.286   0.037   0.543  C11  WP4  10  
WP4  C12  C11  C  0  1  Y  N  N  -26.895   -8.259  -21.285  -3.543   1.203   0.552  C12  WP4  11  
WP4  N02  N1   N  0  1  N  N  N  -31.469   -8.620  -21.523   0.643  -0.282   0.125  N02  WP4  12  
WP4  N06  N2   N  0  1  N  N  N  -34.848   -7.410  -20.567   4.134   0.798  -0.130  N06  WP4  13  
WP4  H1   H1   H  0  1  N  N  N  -27.321   -7.687  -17.970  -4.314  -2.040   0.039  H1   WP4  14  
WP4  H2   H2   H  0  1  N  N  N  -28.370   -9.091  -22.564  -1.669   2.114   0.073  H2   WP4  15  
WP4  H3   H3   H  0  1  N  N  N  -30.948   -9.871  -19.930  -0.197  -0.712  -1.752  H3   WP4  16  
WP4  H4   H4   H  0  1  N  N  N  -30.360  -10.393  -21.545  -0.052   1.021  -1.369  H4   WP4  17  
WP4  H5   H5   H  0  1  N  N  N  -32.126   -7.371  -19.947   2.076  -0.619  -1.394  H5   WP4  18  
WP4  H6   H6   H  0  1  N  N  N  -33.651   -9.964  -20.530   2.453  -1.319   1.519  H6   WP4  19  
WP4  H7   H7   H  0  1  N  N  N  -32.882   -9.442  -18.993   3.071  -2.160   0.065  H7   WP4  20  
WP4  H8   H8   H  0  1  N  N  N  -34.540   -7.698  -18.604   4.434  -0.188   1.717  H8   WP4  21  
WP4  H9   H9   H  0  1  N  N  N  -35.567   -8.910  -19.443   5.064  -1.056   0.291  H9   WP4  22  
WP4  H10  H10  H  0  1  N  N  N  -33.190   -6.427  -21.709   2.458   1.736  -1.052  H10  WP4  23  
WP4  H11  H11  H  0  1  N  N  N  -33.686   -8.017  -22.384   2.349   1.579   0.731  H11  WP4  24  
WP4  H12  H12  H  0  1  N  N  N  -29.524   -8.608  -18.479  -2.013  -2.039  -0.836  H12  WP4  25  
WP4  H13  H13  H  0  1  N  N  N  -25.630   -7.429  -19.746  -5.297   0.038   0.922  H13  WP4  26  
WP4  H14  H14  H  0  1  N  N  N  -26.157   -8.167  -22.068  -3.973   2.114   0.943  H14  WP4  27  
WP4  H15  H15  H  0  1  N  N  N  -30.954   -7.842  -21.883   0.532   0.360   0.896  H15  WP4  28  
WP4  H17  H17  H  0  1  N  N  N  -34.999   -6.483  -20.223   4.516   0.667  -1.055  H17  WP4  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WP4  C13  C12  DOUB  Y  N   1  
WP4  C13  C08  SING  Y  N   2  
WP4  N02  C01  SING  N  N   3  
WP4  N02  C03  SING  N  N   4  
WP4  C07  C03  SING  N  N   5  
WP4  C07  N06  SING  N  N   6  
WP4  C12  C11  SING  Y  N   7  
WP4  C01  C08  SING  N  N   8  
WP4  C03  C04  SING  N  N   9  
WP4  N06  C05  SING  N  N  10  
WP4  C08  C09  DOUB  Y  N  11  
WP4  C11  C10  DOUB  Y  N  12  
WP4  C04  C05  SING  N  N  13  
WP4  C09  C10  SING  Y  N  14  
WP4  C10  H1   SING  N  N  15  
WP4  C13  H2   SING  N  N  16  
WP4  C01  H3   SING  N  N  17  
WP4  C01  H4   SING  N  N  18  
WP4  C03  H5   SING  N  N  19  
WP4  C04  H6   SING  N  N  20  
WP4  C04  H7   SING  N  N  21  
WP4  C05  H8   SING  N  N  22  
WP4  C05  H9   SING  N  N  23  
WP4  C07  H10  SING  N  N  24  
WP4  C07  H11  SING  N  N  25  
WP4  C09  H12  SING  N  N  26  
WP4  C11  H13  SING  N  N  27  
WP4  C12  H14  SING  N  N  28  
WP4  N02  H15  SING  N  N  29  
WP4  N06  H17  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WP4  SMILES            ACDLabs               12.01  "c1cc(ccc1)CNC2CCNC2"  
WP4  InChI             InChI                 1.03   "InChI=1S/C11H16N2/c1-2-4-10(5-3-1)8-13-11-6-7-12-9-11/h1-5,11-13H,6-9H2/t11-/m1/s1"  
WP4  InChIKey          InChI                 1.03   NFLXIAUKMQBTMN-LLVKDONJSA-N  
WP4  SMILES_CANONICAL  CACTVS                3.385  "C1C[C@H](CN1)NCc2ccccc2"  
WP4  SMILES            CACTVS                3.385  "C1C[CH](CN1)NCc2ccccc2"  
WP4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CN[C@@H]2CCNC2"  
WP4  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CNC2CCNC2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WP4  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R)-N-benzylpyrrolidin-3-amine"  
WP4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{R})-~{N}-(phenylmethyl)pyrrolidin-3-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WP4  "Create component"  2020-11-02  RCSB  
WP4  "Initial release"   2020-11-11  RCSB  
##
