data_WC4
#

_chem_comp.id                                   WC4
_chem_comp.name                                 "(1S)-1,4-anhydro-1-(3-methoxynaphthalen-2-yl)-5-O-phosphono-D-ribitol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H19 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-12
_chem_comp.pdbx_modified_date                   2021-06-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       370.291
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    WC4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7KEF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
WC4  C01    C1   C  0  1  N  N  N  170.003  -5.635  51.085   4.457   2.611   1.579  C01    WC4   1  
WC4  C03    C2   C  0  1  Y  N  N  170.083  -3.291  50.694   3.033   0.923   0.701  C03    WC4   2  
WC4  C04    C3   C  0  1  Y  N  N  169.027  -2.346  51.268   1.778   0.450   0.304  C04    WC4   3  
WC4  C05    C4   C  0  1  N  N  S  167.613  -2.817  51.289   0.573   1.346   0.431  C05    WC4   4  
WC4  C07    C5   C  0  1  N  N  R  166.355  -1.569  49.661  -1.661   1.299  -0.178  C07    WC4   5  
WC4  C08    C6   C  0  1  N  N  N  167.190  -0.459  49.008  -2.787   0.370  -0.635  C08    WC4   6  
WC4  C14    C7   C  0  1  N  N  S  165.941  -1.193  51.173  -0.933   1.916  -1.399  C14    WC4   7  
WC4  C16    C8   C  0  1  N  N  R  166.810  -2.096  52.101   0.460   2.250  -0.812  C16    WC4   8  
WC4  C18    C9   C  0  1  Y  N  N  169.430  -0.957  51.787   1.630  -0.807  -0.195  C18    WC4   9  
WC4  C19    C10  C  0  1  Y  N  N  170.923  -0.504  51.733   2.752  -1.645  -0.315  C19    WC4  10  
WC4  C20    C11  C  0  1  Y  N  N  171.970  -1.450  51.162   4.025  -1.169   0.087  C20    WC4  11  
WC4  C21    C12  C  0  1  Y  N  N  173.478  -0.995  51.111   5.145  -2.009  -0.035  C21    WC4  12  
WC4  C22    C13  C  0  1  Y  N  N  173.879   0.380  51.628   4.993  -3.266  -0.535  C22    WC4  13  
WC4  C23    C14  C  0  1  Y  N  N  172.813   1.344  52.209   3.741  -3.734  -0.930  C23    WC4  14  
WC4  C24    C15  C  0  1  Y  N  N  171.330   0.897  52.260   2.635  -2.949  -0.827  C24    WC4  15  
WC4  C25    C16  C  0  1  Y  N  N  171.573  -2.835  50.640   4.144   0.134   0.598  C25    WC4  16  
WC4  O02    O1   O  0  1  N  N  N  169.697  -4.587  50.210   3.150   2.185   1.190  O02    WC4  17  
WC4  O06    O2   O  0  1  N  N  N  166.999  -2.716  49.747  -0.623   0.551   0.490  O06    WC4  18  
WC4  O15    O3   O  0  1  N  N  N  164.650  -1.433  51.380  -1.596   3.101  -1.844  O15    WC4  19  
WC4  O17    O4   O  0  1  N  N  N  165.945  -3.014  52.870   0.527   3.628  -0.436  O17    WC4  20  
WC4  "O5'"  O5   O  0  1  N  N  N  168.475  -0.906  48.427  -3.514  -0.093   0.505  "O5'"  WC4  21  
WC4  OP1    O6   O  0  1  N  N  N  167.311  -1.177  46.101  -5.424  -1.296   1.854  OP1    WC4  22  
WC4  OP2    O7   O  0  1  N  N  N  168.316  -3.159  47.191  -5.782  -0.516  -0.520  OP2    WC4  23  
WC4  P      P1   P  0  1  N  N  N  168.469  -1.670  46.952  -4.772  -1.092   0.396  P      WC4  24  
WC4  H1     H1   H  0  1  N  N  N  169.677  -6.589  50.644   4.410   3.635   1.951  H1     WC4  25  
WC4  H2     H2   H  0  1  N  N  N  171.089  -5.663  51.258   4.834   1.956   2.365  H2     WC4  26  
WC4  H3     H3   H  0  1  N  N  N  169.483  -5.477  52.042   5.125   2.568   0.719  H3     WC4  27  
WC4  H4     H4   H  0  1  N  N  N  167.598  -3.881  51.568   0.659   1.958   1.328  H4     WC4  28  
WC4  H6     H6   H  0  1  N  N  N  165.423  -1.678  49.086  -2.051   2.083   0.472  H6     WC4  29  
WC4  H7     H7   H  0  1  N  N  N  166.590  -0.008  48.204  -3.459   0.913  -1.299  H7     WC4  30  
WC4  H8     H8   H  0  1  N  N  N  167.407   0.301  49.773  -2.362  -0.482  -1.165  H8     WC4  31  
WC4  H9     H9   H  0  1  N  N  N  166.205  -0.140  51.351  -0.849   1.191  -2.209  H9     WC4  32  
WC4  H10    H10  H  0  1  N  N  N  167.384  -1.456  52.787   1.245   2.012  -1.530  H10    WC4  33  
WC4  H11    H11  H  0  1  N  N  N  168.679  -0.293  52.190   0.655  -1.158  -0.497  H11    WC4  34  
WC4  H12    H12  H  0  1  N  N  N  174.228  -1.660  50.709   6.121  -1.659   0.267  H12    WC4  35  
WC4  H13    H13  H  0  1  N  N  N  174.914   0.686  51.590   5.856  -3.909  -0.628  H13    WC4  36  
WC4  H14    H14  H  0  1  N  N  N  173.101   2.318  52.575   3.648  -4.736  -1.324  H14    WC4  37  
WC4  H15    H15  H  0  1  N  N  N  170.580   1.561  52.663   1.671  -3.326  -1.137  H15    WC4  38  
WC4  H16    H16  H  0  1  N  N  N  172.325  -3.495  50.235   5.108   0.510   0.907  H16    WC4  39  
WC4  H18    H18  H  0  1  N  N  N  164.425  -1.206  52.275  -1.178   3.523  -2.607  H18    WC4  40  
WC4  H19    H19  H  0  1  N  N  N  165.378  -2.511  53.443   0.460   4.242  -1.179  H19    WC4  41  
WC4  H20    H20  H  0  1  N  N  N  166.735  -1.904  45.898  -6.188  -1.887   1.864  H20    WC4  42  
WC4  OP3    OP3  O  0  1  N  N  N  170.017  -1.725  46.493  -4.279  -2.515  -0.175  OP3    WC4  43  
WC4  H5     H5   H  0  1  N  N  N  170.323  -2.624  46.517  -3.615  -2.951   0.377  H5     WC4  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
WC4  C01    O02    SING  N  N   1  
WC4  C03    C04    DOUB  Y  N   2  
WC4  C03    C25    SING  Y  N   3  
WC4  C03    O02    SING  N  N   4  
WC4  C04    C05    SING  N  N   5  
WC4  C04    C18    SING  Y  N   6  
WC4  C05    C16    SING  N  N   7  
WC4  C07    C08    SING  N  N   8  
WC4  C07    C14    SING  N  N   9  
WC4  C07    O06    SING  N  N  10  
WC4  C08    "O5'"  SING  N  N  11  
WC4  C14    C16    SING  N  N  12  
WC4  C14    O15    SING  N  N  13  
WC4  C16    O17    SING  N  N  14  
WC4  C18    C19    DOUB  Y  N  15  
WC4  C19    C20    SING  Y  N  16  
WC4  C19    C24    SING  Y  N  17  
WC4  C20    C21    SING  Y  N  18  
WC4  C20    C25    DOUB  Y  N  19  
WC4  C21    C22    DOUB  Y  N  20  
WC4  C22    C23    SING  Y  N  21  
WC4  C23    C24    DOUB  Y  N  22  
WC4  "O5'"  P      SING  N  N  23  
WC4  OP1    P      SING  N  N  24  
WC4  OP2    P      DOUB  N  N  25  
WC4  C01    H1     SING  N  N  26  
WC4  C01    H2     SING  N  N  27  
WC4  C01    H3     SING  N  N  28  
WC4  C05    H4     SING  N  N  29  
WC4  C07    H6     SING  N  N  30  
WC4  C08    H7     SING  N  N  31  
WC4  C08    H8     SING  N  N  32  
WC4  C14    H9     SING  N  N  33  
WC4  C16    H10    SING  N  N  34  
WC4  C18    H11    SING  N  N  35  
WC4  C21    H12    SING  N  N  36  
WC4  C22    H13    SING  N  N  37  
WC4  C23    H14    SING  N  N  38  
WC4  C24    H15    SING  N  N  39  
WC4  C25    H16    SING  N  N  40  
WC4  O15    H18    SING  N  N  41  
WC4  O17    H19    SING  N  N  42  
WC4  OP1    H20    SING  N  N  43  
WC4  C05    O06    SING  N  N  44  
WC4  P      OP3    SING  N  N  45  
WC4  OP3    H5     SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
WC4  SMILES            ACDLabs               12.01  "COc3c(C1C(C(C(COP(O)(=O)O)O1)O)O)cc2c(cccc2)c3"  
WC4  InChI             InChI                 1.03   "InChI=1S/C16H19O8P/c1-22-12-7-10-5-3-2-4-9(10)6-11(12)16-15(18)14(17)13(24-16)8-23-25(19,20)21/h2-7,13-18H,8H2,1H3,(H2,19,20,21)/t13-,14-,15-,16+/m1/s1"  
WC4  InChIKey          InChI                 1.03   JKJYMBPWCSVIAM-FPCVCCKLSA-N  
WC4  SMILES_CANONICAL  CACTVS                3.385  "COc1cc2ccccc2cc1[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O"  
WC4  SMILES            CACTVS                3.385  "COc1cc2ccccc2cc1[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O"  
WC4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1cc2ccccc2cc1C3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O"  
WC4  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1cc2ccccc2cc1C3C(C(C(O3)COP(=O)(O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
WC4  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S)-1,4-anhydro-1-(3-methoxynaphthalen-2-yl)-5-O-phosphono-D-ribitol"  
WC4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{R},3~{S},4~{R})-5-(3-methoxynaphthalen-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
WC4  "Create component"  2020-10-12  RCSB  
WC4  "Initial release"   2021-06-23  RCSB  
##
