data_DW4
# 
_chem_comp.id                                    DW4 
_chem_comp.name                                  "benzyl [(8S,11S,14S)-11-(cyclohexylmethyl)-8-(hydroxymethyl)-5,10,13-trioxo-1,4,9,12,17,18-hexaazabicyclo[14.2.1]nonadeca-16(19),17-dien-14-yl]carbamate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H41 N7 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-11-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        583.679 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DW4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6BID 
_chem_comp.pdbx_subcomponent_list                "7NX 5LB GAU ALC" 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DW4 C33 C22 C 0 1 N N N N N N 85.195 -48.528 140.821 -2.339 -1.661 0.465  C8   7NX 1  
DW4 O42 O6  O 0 1 N N N N N N 85.801 -49.326 141.463 -1.761 -1.465 1.516  O8   7NX 2  
DW4 O34 O5  O 0 1 N N N N N N 84.402 -47.518 141.375 -3.685 -1.650 0.425  O7   7NX 3  
DW4 C35 C23 C 0 1 N N N N N N 84.184 -47.588 142.760 -4.380 -1.397 1.675  C7   7NX 4  
DW4 C36 C24 C 0 1 Y N N N N N 85.138 -46.611 143.448 -5.868 -1.422 1.436  C1   7NX 5  
DW4 C37 C25 C 0 1 Y N N N N N 85.799 -46.988 144.605 -6.567 -2.609 1.556  C2   7NX 6  
DW4 C38 C26 C 0 1 Y N N N N N 86.660 -46.100 145.237 -7.931 -2.632 1.337  C3   7NX 7  
DW4 C39 C27 C 0 1 Y N N N N N 86.852 -44.838 144.710 -8.597 -1.469 0.999  C4   7NX 8  
DW4 C40 C28 C 0 1 Y N N N N N 86.184 -44.460 143.553 -7.898 -0.283 0.879  C5   7NX 9  
DW4 C41 C29 C 0 1 Y N N N N N 85.324 -45.346 142.926 -6.534 -0.258 1.103  C6   7NX 10 
DW4 N18 N3  N 0 1 N N N N N N 83.447 -46.861 134.792 6.001  -1.197 -0.255 N15  5LB 11 
DW4 C19 C15 C 0 1 N N N N N N 82.151 -47.372 134.356 5.398  -2.374 0.376  C16  5LB 12 
DW4 C20 C16 C 0 1 N N N N N N 82.075 -48.904 134.445 5.203  -3.469 -0.675 C17  5LB 13 
DW4 N29 N4  N 0 1 Y N N N N N 82.563 -49.385 135.729 3.771  -3.681 -0.899 N26  5LB 14 
DW4 O01 O1  O 0 1 N N N N N N 86.535 -47.888 137.133 1.355  -0.256 -1.382 O01  5LB 15 
DW4 C02 C2  C 0 1 N N N N N N 86.775 -48.969 137.569 0.349  -0.487 -0.744 C02  5LB 16 
DW4 C25 C18 C 0 1 N N S N N N 85.987 -49.595 138.726 -0.169 -1.897 -0.617 C22  5LB 17 
DW4 C26 C19 C 0 1 N N N N N N 85.083 -50.711 138.225 0.369  -2.744 -1.772 C23  5LB 18 
DW4 C27 C20 C 0 1 Y N N N N N 83.896 -50.196 137.427 1.683  -3.363 -1.373 C24  5LB 19 
DW4 C28 C21 C 0 1 Y N N N N N 83.812 -49.780 136.048 2.882  -2.739 -1.289 C25  5LB 20 
DW4 N30 N5  N 0 1 Y N N N N N 81.874 -49.553 136.839 3.143  -4.795 -0.758 N27  5LB 21 
DW4 N31 N6  N 0 1 Y N N N N N 82.643 -50.022 137.828 1.896  -4.639 -1.031 N28  5LB 22 
DW4 N32 N7  N 0 1 N N N N N N 85.244 -48.540 139.374 -1.633 -1.885 -0.661 N29  5LB 23 
DW4 N13 N2  N 0 1 N N N N N N 88.285 -47.647 134.086 2.549  2.474  0.676  N    GAU 24 
DW4 C14 C11 C 0 1 N N S N N N 87.622 -47.176 132.874 3.467  2.485  1.841  CA   GAU 25 
DW4 C15 C12 C 0 1 N N N N N N 86.847 -45.902 133.203 4.827  1.947  1.392  CB   GAU 26 
DW4 C16 C13 C 0 1 N N N N N N 85.845 -46.111 134.316 4.698  0.465  1.035  CG   GAU 27 
DW4 C17 C14 C 0 1 N N N N N N 84.502 -46.658 133.814 5.967  -0.004 0.371  CD   GAU 28 
DW4 O21 O2  O 0 1 N N N N N N 84.311 -46.926 132.667 6.959  0.693  0.400  OE1  GAU 29 
DW4 C22 C17 C 0 1 N N N N N N 88.680 -46.902 131.817 3.626  3.917  2.358  C    GAU 30 
DW4 O23 O3  O 0 1 N N N N N N 89.369 -48.084 131.498 2.379  4.374  2.884  OXT  GAU 31 
DW4 N03 N1  N 0 1 N N N N N N 87.867 -49.771 137.051 -0.331 0.523  -0.131 N    ALC 32 
DW4 C04 C3  C 0 1 N N S N N N 88.683 -49.236 135.992 0.297  1.860  -0.192 CA   ALC 33 
DW4 C12 C10 C 0 1 N N N N N N 87.867 -48.876 134.753 1.294  2.000  0.945  C    ALC 34 
DW4 O24 O4  O 0 1 N N N N N N 86.975 -49.553 134.353 0.981  1.680  2.073  O    ALC 35 
DW4 C05 C4  C 0 1 N N N N N N 89.740 -50.254 135.576 -0.780 2.939  -0.060 CB   ALC 36 
DW4 C06 C5  C 0 1 N N N N N N 90.784 -50.562 136.665 -1.722 2.869  -1.264 CG   ALC 37 
DW4 C11 C9  C 0 1 N N N N N N 91.806 -51.427 135.999 -2.878 3.852  -1.065 CD2  ALC 38 
DW4 C10 C1  C 0 1 N N N N N N 92.952 -51.805 136.913 -3.820 3.782  -2.268 CE2  ALC 39 
DW4 C09 C8  C 0 1 N N N N N N 93.622 -50.563 137.540 -3.051 4.150  -3.539 CZ   ALC 40 
DW4 C08 C7  C 0 1 N N N N N N 92.636 -49.466 138.042 -1.895 3.168  -3.739 CE1  ALC 41 
DW4 C07 C6  C 0 1 N N N N N N 91.426 -49.274 137.118 -0.953 3.237  -2.535 CD1  ALC 42 
DW4 H35 H35 H 0 1 N N N N N N 83.143 -47.313 142.987 -4.115 -2.166 2.400  H1   7NX 43 
DW4 H36 H36 H 0 1 N N N N N N 84.379 -48.610 143.116 -4.090 -0.419 2.060  H3   7NX 44 
DW4 H37 H37 H 0 1 N N N N N N 85.645 -47.974 145.017 -6.046 -3.518 1.820  H5   7NX 45 
DW4 H38 H38 H 0 1 N N N N N N 87.178 -46.396 146.138 -8.477 -3.560 1.430  H7   7NX 46 
DW4 H39 H39 H 0 1 N N N N N N 87.522 -44.145 145.198 -9.663 -1.488 0.827  H10  7NX 47 
DW4 H40 H40 H 0 1 N N N N N N 86.335 -43.473 143.141 -8.418 0.626  0.614  H11  7NX 48 
DW4 H41 H41 H 0 1 N N N N N N 84.800 -45.048 142.030 -5.989 0.670  1.014  H13  7NX 49 
DW4 H22 H22 H 0 1 N N N N N N 83.607 -46.652 135.757 6.429  -1.278 -1.122 H6   5LB 50 
DW4 H23 H23 H 0 1 N N N N N N 81.983 -47.068 133.312 6.054  -2.740 1.166  H7   5LB 51 
DW4 H24 H24 H 0 1 N N N N N N 81.366 -46.940 134.994 4.431  -2.103 0.802  H8   5LB 52 
DW4 H26 H26 H 0 1 N N N N N N 82.688 -49.340 133.643 5.676  -3.165 -1.608 H9   5LB 53 
DW4 H25 H25 H 0 1 N N N N N N 81.028 -49.219 134.319 5.657  -4.396 -0.322 H10  5LB 54 
DW4 H30 H30 H 0 1 N N N N N N 86.706 -50.025 139.438 0.163  -2.322 0.330  H26  5LB 55 
DW4 H31 H31 H 0 1 N N N N N N 84.706 -51.273 139.092 -0.346 -3.531 -2.009 H27  5LB 56 
DW4 H32 H32 H 0 1 N N N N N N 85.674 -51.380 137.583 0.517  -2.112 -2.648 H28  5LB 57 
DW4 H33 H33 H 0 1 N N N N N N 84.644 -49.784 135.359 3.086  -1.698 -1.492 H29  5LB 58 
DW4 H34 H34 H 0 1 N N N N N N 84.776 -47.837 138.838 -2.095 -2.038 -1.500 H30  5LB 59 
DW4 H16 H16 H 0 1 N N N N N N 89.042 -47.116 134.468 2.817  2.779  -0.205 H    GAU 60 
DW4 H17 H17 H 0 1 N N N N N N 86.924 -47.940 132.502 3.065  1.850  2.631  HA   GAU 61 
DW4 H18 H18 H 0 1 N N N N N N 87.561 -45.124 133.511 5.167  2.503  0.518  HB2  GAU 62 
DW4 H19 H19 H 0 1 N N N N N N 86.310 -45.572 132.301 5.549  2.064  2.200  HB3  GAU 63 
DW4 H20 H20 H 0 1 N N N N N N 86.267 -46.825 135.039 4.527  -0.114 1.942  HG2  GAU 64 
DW4 H21 H21 H 0 1 N N N N N N 85.667 -45.147 134.814 3.859  0.327  0.352  HG3  GAU 65 
DW4 H27 H27 H 0 1 N N N N N N 89.394 -46.159 132.202 4.382  3.938  3.143  HO1  GAU 66 
DW4 H28 H28 H 0 1 N N N N N N 88.195 -46.509 130.911 3.935  4.566  1.538  HO2  GAU 67 
DW4 H29 H29 H 0 1 N N N N N N 90.026 -47.899 130.837 2.406  5.277  3.230  HXT  GAU 68 
DW4 H3  H3  H 0 1 N N N N N N 88.050 -50.681 137.423 -1.177 0.373  0.318  H2   ALC 69 
DW4 H4  H4  H 0 1 N N N N N N 89.195 -48.329 136.345 0.817  1.977  -1.143 HA   ALC 70 
DW4 H5  H5  H 0 1 N N N N N N 89.230 -51.192 135.312 -1.348 2.775  0.855  HB2  ALC 71 
DW4 H6  H6  H 0 1 N N N N N N 90.267 -49.862 134.694 -0.308 3.921  -0.024 HB3  ALC 72 
DW4 H7  H7  H 0 1 N N N N N N 90.314 -51.085 137.511 -2.117 1.858  -1.358 HG   ALC 73 
DW4 H15 H15 H 0 1 N N N N N N 92.213 -50.884 135.133 -3.425 3.589  -0.159 HD23 ALC 74 
DW4 H14 H14 H 0 1 N N N N N N 91.314 -52.349 135.655 -2.483 4.863  -0.970 HD22 ALC 75 
DW4 H2  H2  H 0 1 N N N N N N 93.703 -52.359 136.331 -4.215 2.770  -2.363 HE23 ALC 76 
DW4 H1  H1  H 0 1 N N N N N N 92.567 -52.447 137.719 -4.643 4.482  -2.126 HE22 ALC 77 
DW4 H13 H13 H 0 1 N N N N N N 94.279 -50.111 136.782 -3.722 4.100  -4.397 HZ3  ALC 78 
DW4 H12 H12 H 0 1 N N N N N N 94.226 -50.897 138.397 -2.656 5.161  -3.445 HZ2  ALC 79 
DW4 H11 H11 H 0 1 N N N N N N 92.272 -49.753 139.040 -2.290 2.156  -3.833 HE13 ALC 80 
DW4 H10 H10 H 0 1 N N N N N N 93.179 -48.512 138.110 -1.348 3.430  -4.644 HE12 ALC 81 
DW4 H8  H8  H 0 1 N N N N N N 91.757 -48.721 136.226 -0.559 4.249  -2.440 HD12 ALC 82 
DW4 H9  H9  H 0 1 N N N N N N 90.671 -48.683 137.657 -0.130 2.537  -2.677 HD13 ALC 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DW4 O23 C22 SING N N 1  
DW4 C22 C14 SING N N 2  
DW4 O21 C17 DOUB N N 3  
DW4 C14 C15 SING N N 4  
DW4 C14 N13 SING N N 5  
DW4 C15 C16 SING N N 6  
DW4 C17 C16 SING N N 7  
DW4 C17 N18 SING N N 8  
DW4 N13 C12 SING N N 9  
DW4 O24 C12 DOUB N N 10 
DW4 C19 C20 SING N N 11 
DW4 C19 N18 SING N N 12 
DW4 C20 N29 SING N N 13 
DW4 C12 C04 SING N N 14 
DW4 C05 C04 SING N N 15 
DW4 C05 C06 SING N N 16 
DW4 N29 C28 SING Y N 17 
DW4 N29 N30 SING Y N 18 
DW4 C04 N03 SING N N 19 
DW4 C11 C06 SING N N 20 
DW4 C11 C10 SING N N 21 
DW4 C28 C27 DOUB Y N 22 
DW4 C06 C07 SING N N 23 
DW4 N30 N31 DOUB Y N 24 
DW4 C10 C09 SING N N 25 
DW4 N03 C02 SING N N 26 
DW4 C07 C08 SING N N 27 
DW4 O01 C02 DOUB N N 28 
DW4 C27 N31 SING Y N 29 
DW4 C27 C26 SING N N 30 
DW4 C09 C08 SING N N 31 
DW4 C02 C25 SING N N 32 
DW4 C26 C25 SING N N 33 
DW4 C25 N32 SING N N 34 
DW4 N32 C33 SING N N 35 
DW4 C33 O34 SING N N 36 
DW4 C33 O42 DOUB N N 37 
DW4 O34 C35 SING N N 38 
DW4 C35 C36 SING N N 39 
DW4 C41 C36 DOUB Y N 40 
DW4 C41 C40 SING Y N 41 
DW4 C36 C37 SING Y N 42 
DW4 C40 C39 DOUB Y N 43 
DW4 C37 C38 DOUB Y N 44 
DW4 C39 C38 SING Y N 45 
DW4 C10 H1  SING N N 46 
DW4 C10 H2  SING N N 47 
DW4 N03 H3  SING N N 48 
DW4 C04 H4  SING N N 49 
DW4 C05 H5  SING N N 50 
DW4 C05 H6  SING N N 51 
DW4 C06 H7  SING N N 52 
DW4 C07 H8  SING N N 53 
DW4 C07 H9  SING N N 54 
DW4 C08 H10 SING N N 55 
DW4 C08 H11 SING N N 56 
DW4 C09 H12 SING N N 57 
DW4 C09 H13 SING N N 58 
DW4 C11 H14 SING N N 59 
DW4 C11 H15 SING N N 60 
DW4 N13 H16 SING N N 61 
DW4 C14 H17 SING N N 62 
DW4 C15 H18 SING N N 63 
DW4 C15 H19 SING N N 64 
DW4 C16 H20 SING N N 65 
DW4 C16 H21 SING N N 66 
DW4 N18 H22 SING N N 67 
DW4 C19 H23 SING N N 68 
DW4 C19 H24 SING N N 69 
DW4 C20 H25 SING N N 70 
DW4 C20 H26 SING N N 71 
DW4 C22 H27 SING N N 72 
DW4 C22 H28 SING N N 73 
DW4 O23 H29 SING N N 74 
DW4 C25 H30 SING N N 75 
DW4 C26 H31 SING N N 76 
DW4 C26 H32 SING N N 77 
DW4 C28 H33 SING N N 78 
DW4 N32 H34 SING N N 79 
DW4 C35 H35 SING N N 80 
DW4 C35 H36 SING N N 81 
DW4 C37 H37 SING N N 82 
DW4 C38 H38 SING N N 83 
DW4 C39 H39 SING N N 84 
DW4 C40 H40 SING N N 85 
DW4 C41 H41 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DW4 SMILES           ACDLabs              12.01 "C(OCc1ccccc1)(=O)NC2C(=O)NC(C(NC(CCC(NCCn3cc(C2)nn3)=O)CO)=O)CC4CCCCC4"                                                                                                                                                                                               
DW4 InChI            InChI                1.03  "InChI=1S/C29H41N7O6/c37-18-22-11-12-26(38)30-13-14-36-17-23(34-35-36)16-25(33-29(41)42-19-21-9-5-2-6-10-21)28(40)32-24(27(39)31-22)15-20-7-3-1-4-8-20/h2,5-6,9-10,17,20,22,24-25,37H,1,3-4,7-8,11-16,18-19H2,(H,30,38)(H,31,39)(H,32,40)(H,33,41)/t22-,24-,25-/m0/s1" 
DW4 InChIKey         InChI                1.03  QPOBCHAUHXOWOC-HVCNVCAESA-N                                                                                                                                                                                                                                            
DW4 SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1CCC(=O)NCCn2cc(C[C@H](NC(=O)OCc3ccccc3)C(=O)N[C@@H](CC4CCCCC4)C(=O)N1)nn2"                                                                                                                                                                                   
DW4 SMILES           CACTVS               3.385 "OC[CH]1CCC(=O)NCCn2cc(C[CH](NC(=O)OCc3ccccc3)C(=O)N[CH](CC4CCCCC4)C(=O)N1)nn2"                                                                                                                                                                                        
DW4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)COC(=O)N[C@H]2Cc3cn(nn3)CCNC(=O)CC[C@H](NC(=O)[C@@H](NC2=O)CC4CCCCC4)CO"                                                                                                                                                                                    
DW4 SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)COC(=O)NC2Cc3cn(nn3)CCNC(=O)CCC(NC(=O)C(NC2=O)CC4CCCCC4)CO"                                                                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DW4 "SYSTEMATIC NAME" ACDLabs              12.01 "benzyl [(8S,11S,14S)-11-(cyclohexylmethyl)-8-(hydroxymethyl)-5,10,13-trioxo-1,4,9,12,17,18-hexaazabicyclo[14.2.1]nonadeca-16(19),17-dien-14-yl]carbamate"                                   
DW4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(phenylmethyl) ~{N}-[(8~{S},11~{S},14~{S})-11-(cyclohexylmethyl)-8-(hydroxymethyl)-5,10,13-tris(oxidanylidene)-1,4,9,12,17,18-hexazabicyclo[14.2.1]nonadeca-16(19),17-dien-14-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DW4 "Create component" 2017-11-09 RCSB 
DW4 "Initial release"  2018-11-07 RCSB 
DW4 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            DW4 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C22 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
