data_DH4
# 
_chem_comp.id                                    DH4 
_chem_comp.name                                  "2-[(1R)-1-{[(E)-azepan-1-ylmethylidene]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H25 N3 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Mecillinam, bound form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-06-25 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        327.442 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DH4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3NC8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DH4 C   C   C 0 1 N N N N N N -11.784 -10.876 5.377  -0.148 -0.107 -2.004 C   DH4 1  
DH4 N   N   N 0 1 N N N N N N -10.017 -11.515 3.870  1.324  -0.393 -0.096 N   DH4 2  
DH4 O   O   O 0 1 N N N N N N -12.511 -10.512 4.464  0.526  0.863  -2.253 O   DH4 3  
DH4 CA  CA  C 0 1 N N R N N N -10.513 -11.676 5.219  0.164  -0.951 -0.795 CA  DH4 4  
DH4 CAC CAC C 0 1 N N N N N N -9.777  -12.613 3.220  2.391  -1.107 0.058  CAC DH4 5  
DH4 CAE CAE C 0 1 N N N N N N -9.708  -13.489 -0.990 5.796  0.292  -0.560 CAE DH4 6  
DH4 CAF CAF C 0 1 N N N N N N -9.638  -11.953 -0.965 5.324  1.655  -0.061 CAF DH4 7  
DH4 CAG CAG C 0 1 N N N N N N -10.176 -14.095 0.344  5.976  -0.637 0.616  CAG DH4 8  
DH4 CAH CAH C 0 1 N N N N N N -8.470  -11.448 -0.098 3.869  1.760  0.129  CAH DH4 9  
DH4 CAI CAI C 0 1 N N N N N N -9.066  -13.907 1.408  4.679  -1.426 0.870  CAI DH4 10 
DH4 CAJ CAJ C 0 1 N N N N N N -8.908  -11.303 1.371  3.395  0.767  1.219  CAJ DH4 11 
DH4 NAL NAL N 0 1 N N N N N N -9.240  -12.603 2.021  3.476  -0.585 0.712  NAL DH4 12 
DH4 H1  H1  H 0 1 N N N N N N -12.075 -10.603 6.380  -0.976 -0.368 -2.645 H1  DH4 13 
DH4 H2  H2  H 0 1 N N N N N N -9.877  -11.941 6.077  0.386  -1.970 -1.111 H2  DH4 14 
DH4 H4  H4  H 0 1 N N N N N N -10.025 -13.560 3.677  2.428  -2.114 -0.329 H4  DH4 15 
DH4 H5  H5  H 0 1 N N N N N N -10.411 -13.794 -1.779 5.053  -0.124 -1.241 H5  DH4 16 
DH4 H6  H6  H 0 1 N N N N N N -8.706  -13.881 -1.220 6.746  0.405  -1.083 H6  DH4 17 
DH4 H7  H7  H 0 1 N N N N N N -9.503  -11.586 -1.993 5.812  1.863  0.891  H7  DH4 18 
DH4 H8  H8  H 0 1 N N N N N N -10.581 -11.560 -0.556 5.635  2.413  -0.779 H8  DH4 19 
DH4 H9  H9  H 0 1 N N N N N N -11.094 -13.588 0.676  6.787  -1.334 0.405  H9  DH4 20 
DH4 H10 H10 H 0 1 N N N N N N -10.378 -15.168 0.210  6.224  -0.053 1.502  H10 DH4 21 
DH4 H11 H11 H 0 1 N N N N N N -7.639  -12.166 -0.158 3.617  2.776  0.432  H11 DH4 22 
DH4 H12 H12 H 0 1 N N N N N N -8.137  -10.469 -0.474 3.365  1.531  -0.810 H12 DH4 23 
DH4 H13 H13 H 0 1 N N N N N N -9.148  -14.692 2.174  4.625  -2.256 0.166  H13 DH4 24 
DH4 H14 H14 H 0 1 N N N N N N -8.078  -13.964 0.929  4.701  -1.825 1.884  H14 DH4 25 
DH4 H15 H15 H 0 1 N N N N N N -8.089  -10.831 1.934  4.032  0.863  2.099  H15 DH4 26 
DH4 H16 H16 H 0 1 N N N N N N -9.798  -10.658 1.407  2.364  0.991  1.491  H16 DH4 27 
DH4 N1  N1  N 0 1 N N N N N N ?       ?       ?      -1.558 0.420  0.371  N1  DH4 28 
DH4 C3  C3  C 0 1 N N N N N N ?       ?       ?      -2.939 0.389  0.864  C3  DH4 29 
DH4 C4  C4  C 0 1 N N N N N N ?       ?       ?      -3.742 -0.807 0.319  C4  DH4 30 
DH4 S1  S1  S 0 1 N N N N N N ?       ?       ?      -2.501 -1.750 -0.653 S1  DH4 31 
DH4 C6  C6  C 0 1 N N N N N N ?       ?       ?      -1.043 -0.960 0.146  C6  DH4 32 
DH4 H3  H3  H 0 1 N N N N N N ?       ?       ?      -1.486 0.974  -0.469 H3  DH4 33 
DH4 H18 H18 H 0 1 N N N N N N ?       ?       ?      -2.922 0.336  1.952  H18 DH4 34 
DH4 H24 H24 H 0 1 N N N N N N ?       ?       ?      -0.799 -1.448 1.089  H24 DH4 35 
DH4 C1  C1  C 0 1 N N N N N N ?       ?       ?      -4.286 -1.659 1.469  C1  DH4 36 
DH4 C2  C2  C 0 1 N N N N N N ?       ?       ?      -4.881 -0.326 -0.582 C2  DH4 37 
DH4 H17 H17 H 0 1 N N N N N N ?       ?       ?      -4.939 -1.050 2.094  H17 DH4 38 
DH4 H20 H20 H 0 1 N N N N N N ?       ?       ?      -4.850 -2.498 1.063  H20 DH4 39 
DH4 H21 H21 H 0 1 N N N N N N ?       ?       ?      -3.456 -2.034 2.067  H21 DH4 40 
DH4 H22 H22 H 0 1 N N N N N N ?       ?       ?      -4.468 0.233  -1.422 H22 DH4 41 
DH4 H23 H23 H 0 1 N N N N N N ?       ?       ?      -5.436 -1.186 -0.956 H23 DH4 42 
DH4 H25 H25 H 0 1 N N N N N N ?       ?       ?      -5.550 0.318  -0.010 H25 DH4 43 
DH4 C5  C5  C 0 1 N N N N N N ?       ?       ?      -3.629 1.665  0.455  C5  DH4 44 
DH4 O1  O1  O 0 1 N N N N N N ?       ?       ?      -4.752 2.051  1.081  O1  DH4 45 
DH4 O2  O2  O 0 1 N N N N N N ?       ?       ?      -3.172 2.340  -0.437 O2  DH4 46 
DH4 H26 H26 H 0 1 N N N N N N ?       ?       ?      -5.159 2.876  0.784  H26 DH4 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DH4 CAE CAF SING N N 1  
DH4 CAE CAG SING N N 2  
DH4 CAF CAH SING N N 3  
DH4 CAH CAJ SING N N 4  
DH4 CAG CAI SING N N 5  
DH4 CAJ NAL SING N N 6  
DH4 CAI NAL SING N N 7  
DH4 NAL CAC SING N N 8  
DH4 CAC N   DOUB N N 9  
DH4 N   CA  SING N N 10 
DH4 O   C   DOUB N N 11 
DH4 CA  C   SING N N 12 
DH4 C   H1  SING N N 13 
DH4 CA  H2  SING N N 14 
DH4 CAC H4  SING N N 15 
DH4 CAE H5  SING N N 16 
DH4 CAE H6  SING N N 17 
DH4 CAF H7  SING N N 18 
DH4 CAF H8  SING N N 19 
DH4 CAG H9  SING N N 20 
DH4 CAG H10 SING N N 21 
DH4 CAH H11 SING N N 22 
DH4 CAH H12 SING N N 23 
DH4 CAI H13 SING N N 24 
DH4 CAI H14 SING N N 25 
DH4 CAJ H15 SING N N 26 
DH4 CAJ H16 SING N N 27 
DH4 CA  C6  SING N N 28 
DH4 C6  N1  SING N N 29 
DH4 N1  C3  SING N N 30 
DH4 C3  C4  SING N N 31 
DH4 C4  S1  SING N N 32 
DH4 S1  C6  SING N N 33 
DH4 N1  H3  SING N N 34 
DH4 C3  H18 SING N N 35 
DH4 C6  H24 SING N N 36 
DH4 C4  C1  SING N N 37 
DH4 C4  C2  SING N N 38 
DH4 C1  H17 SING N N 39 
DH4 C1  H20 SING N N 40 
DH4 C1  H21 SING N N 41 
DH4 C2  H22 SING N N 42 
DH4 C2  H23 SING N N 43 
DH4 C2  H25 SING N N 44 
DH4 C3  C5  SING N N 45 
DH4 C5  O1  SING N N 46 
DH4 C5  O2  DOUB N N 47 
DH4 O1  H26 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DH4 SMILES           ACDLabs              12.01 "O=C(O)C1NC(SC1(C)C)C(/N=C/N2CCCCCC2)C=O"                                                                                                         
DH4 InChI            InChI                1.03  "InChI=1S/C15H25N3O3S/c1-15(2)12(14(20)21)17-13(22-15)11(9-19)16-10-18-7-5-3-4-6-8-18/h9-13,17H,3-8H2,1-2H3,(H,20,21)/b16-10+/t11-,12?,13?/m1/s1" 
DH4 InChIKey         InChI                1.03  GIESTXBEHWEDNC-XRSRENSCSA-N                                                                                                                       
DH4 SMILES_CANONICAL CACTVS               3.370 "CC1(C)SC(NC1C(O)=O)[C@@H](C=O)N=CN2CCCCCC2"                                                                                                      
DH4 SMILES           CACTVS               3.370 "CC1(C)SC(NC1C(O)=O)[CH](C=O)N=CN2CCCCCC2"                                                                                                        
DH4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1(C(NC(S1)[C@H](C=O)/N=C/N2CCCCCC2)C(=O)O)C"                                                                                                   
DH4 SMILES           "OpenEye OEToolkits" 1.7.6 "CC1(C(NC(S1)C(C=O)N=CN2CCCCCC2)C(=O)O)C"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DH4 "SYSTEMATIC NAME" ACDLabs              12.01 "2-[(1R)-1-{[(E)-azepan-1-ylmethylidene]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid"          
DH4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[(1S)-1-[(E)-azepan-1-ylmethylideneamino]-2-oxidanylidene-ethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DH4 "Create component"   2010-06-25 RCSB 
DH4 "Modify descriptor"  2011-06-04 RCSB 
DH4 "Other modification" 2012-05-09 RCSB 
DH4 "Modify synonyms"    2020-06-05 PDBE 
DH4 "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      DH4 
_pdbx_chem_comp_synonyms.name         "Mecillinam, bound form" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            DH4 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
