data_AR4
#

_chem_comp.id                                   AR4
_chem_comp.name                                 "2-azanyl-5-[3-fluoranyl-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-5-oxidanylidene-pentanoic acid"
_chem_comp.type                                 "L-PEPTIDE LINKING"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C10 H16 F N O8"
_chem_comp.mon_nstd_parent_comp_id              GLU
_chem_comp.pdbx_synonyms                        "MODIFIED RIBOSYLATED GLUTAMYL ESTER"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2004-02-16
_chem_comp.pdbx_modified_date                   2020-06-21
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       297.234
_chem_comp.one_letter_code                      E
_chem_comp.three_letter_code                    AR4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1S2D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
AR4  N       N       N  0  1  N  N  N  -2.554   -9.703  -13.959   4.762   1.753  -0.036  N       AR4   1  
AR4  CA      CA      C  0  1  N  N  S  -3.301   -8.468  -13.806   4.491   0.409   0.491  CA      AR4   2  
AR4  CB      CB      C  0  1  N  N  N  -3.638   -7.901  -15.185   3.169  -0.106  -0.083  CB      AR4   3  
AR4  CG      CG      C  0  1  N  N  N  -2.363   -7.534  -15.966   2.019   0.767   0.424  CG      AR4   4  
AR4  CD      CD      C  0  1  N  N  N  -2.553   -7.357  -17.463   0.717   0.261  -0.141  CD      AR4   5  
AR4  OE1     OE1     O  0  1  N  N  N  -3.675   -7.643  -17.943   0.710  -0.701  -0.873  OE1     AR4   6  
AR4  OE2     OE2     O  0  1  N  N  N  -1.536   -6.876  -18.073  -0.435   0.877   0.169  OE2     AR4   7  
AR4  C       C       C  0  1  N  N  N  -4.535   -8.617  -12.916   5.607  -0.522   0.093  C       AR4   8  
AR4  O       O       O  0  1  N  N  N  -4.842   -7.719  -12.123   6.329  -0.237  -0.833  O       AR4   9  
AR4  "O5'"   "O5'"   O  0  1  N  N  N  -1.305  -10.567  -21.699  -3.385  -3.452   0.083  "O5'"   AR4  10  
AR4  "C5'"   "C5'"   C  0  1  N  N  N  -1.752   -9.229  -21.970  -3.892  -2.243  -0.484  "C5'"   AR4  11  
AR4  "C4'"   "C4'"   C  0  1  N  N  R  -2.557   -8.695  -20.799  -3.397  -1.049   0.335  "C4'"   AR4  12  
AR4  "O4'"   "O4'"   O  0  1  N  N  N  -1.843   -8.509  -19.565  -1.976  -0.924   0.202  "O4'"   AR4  13  
AR4  "C1'"   "C1'"   C  0  1  N  N  R  -1.413   -7.148  -19.418  -1.650   0.334  -0.411  "C1'"   AR4  14  
AR4  "C2'"   "C2'"   C  0  1  N  N  S  -2.408   -6.319  -20.208  -2.853   1.259  -0.101  "C2'"   AR4  15  
AR4  "F2'"   "F2'"   F  0  1  N  N  N  -1.735   -5.437  -21.051  -2.972   2.270  -1.061  "F2'"   AR4  16  
AR4  "C3'"   "C3'"   C  0  1  N  N  R  -3.158   -7.355  -21.027  -4.032   0.253  -0.200  "C3'"   AR4  17  
AR4  "O3'"   "O3'"   O  0  1  N  N  N  -4.322   -7.394  -20.560  -5.122   0.664   0.627  "O3'"   AR4  18  
AR4  OXT     OXT     O  0  1  N  N  N       ?        ?        ?   5.799  -1.666   0.767  OXT     AR4  19  
AR4  "O2'"   "O2'"   O  0  1  N  N  N       ?        ?        ?  -2.754   1.811   1.213  "O2'"   AR4  20  
AR4  H       H       H  0  1  N  N  N  -2.334  -10.074  -13.057   4.830   1.740  -1.043  H       AR4  21  
AR4  H2      H2      H  0  1  N  Y  N  -3.106  -10.365  -14.466   4.061   2.410   0.271  H2      AR4  22  
AR4  HA      HA      H  0  1  N  N  N  -2.642   -7.737  -13.315   4.423   0.451   1.578  HA      AR4  23  
AR4  HB2     HB2     H  0  1  N  N  N  -4.202   -8.654  -15.754   3.204  -0.064  -1.171  HB2     AR4  24  
AR4  HB3     HB3     H  0  1  N  N  N  -4.254   -6.998  -15.060   3.011  -1.136   0.237  HB3     AR4  25  
AR4  HG2     HG2     H  0  1  N  N  N  -1.973   -6.590  -15.558   1.983   0.726   1.512  HG2     AR4  26  
AR4  HG3     HG3     H  0  1  N  N  N  -1.625   -8.334  -15.808   2.177   1.798   0.104  HG3     AR4  27  
AR4  "H5'"   "H5'"   H  0  1  N  N  N  -0.803  -10.890  -22.438  -3.659  -4.252  -0.387  "H5'"   AR4  28  
AR4  "H5'1"  "H5'1"  H  0  0  N  N  N  -0.879   -8.581  -22.135  -3.542  -2.148  -1.512  "H5'1"  AR4  29  
AR4  "H5'2"  "H5'2"  H  0  0  N  N  N  -2.382   -9.233  -22.872  -4.982  -2.264  -0.472  "H5'2"  AR4  30  
AR4  "H4'"   "H4'"   H  0  1  N  N  N  -3.379   -9.403  -20.618  -3.659  -1.186   1.384  "H4'"   AR4  31  
AR4  "H1'"   "H1'"   H  0  1  N  N  N  -0.391   -6.995  -19.795  -1.532   0.211  -1.488  "H1'"   AR4  32  
AR4  "H3'"   "H3'"   H  0  1  N  N  N  -3.109   -7.093  -22.094  -4.353   0.131  -1.234  "H3'"   AR4  33  
AR4  "H3'1"  "H3'1"  H  0  0  N  N  N  -4.282   -7.483  -19.615  -5.555   1.477   0.333  "H3'1"  AR4  34  
AR4  "HO2'"  "HO2'"  H  0  0  N  N  N  -0.623    0.519   -0.494  -1.971   2.361   1.351  "HO2'"  AR4  35  
AR4  HO      HO      H  0  1  N  N  N   0.250   -0.595    0.711   6.528  -2.231   0.475  HO      AR4  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
AR4  N      CA      SING  N  N   1  
AR4  N      H       SING  N  N   2  
AR4  N      H2      SING  N  N   3  
AR4  CA     CB      SING  N  N   4  
AR4  CA     C       SING  N  N   5  
AR4  CA     HA      SING  N  N   6  
AR4  CB     CG      SING  N  N   7  
AR4  CB     HB2     SING  N  N   8  
AR4  CB     HB3     SING  N  N   9  
AR4  CG     CD      SING  N  N  10  
AR4  CG     HG2     SING  N  N  11  
AR4  CG     HG3     SING  N  N  12  
AR4  CD     OE1     DOUB  N  N  13  
AR4  CD     OE2     SING  N  N  14  
AR4  OE2    "C1'"   SING  N  N  15  
AR4  C      O       DOUB  N  N  16  
AR4  C      OXT     SING  N  N  17  
AR4  "O5'"  "C5'"   SING  N  N  18  
AR4  "O5'"  "H5'"   SING  N  N  19  
AR4  "C5'"  "C4'"   SING  N  N  20  
AR4  "C5'"  "H5'1"  SING  N  N  21  
AR4  "C5'"  "H5'2"  SING  N  N  22  
AR4  "C4'"  "O4'"   SING  N  N  23  
AR4  "C4'"  "C3'"   SING  N  N  24  
AR4  "C4'"  "H4'"   SING  N  N  25  
AR4  "O4'"  "C1'"   SING  N  N  26  
AR4  "C1'"  "C2'"   SING  N  N  27  
AR4  "C1'"  "H1'"   SING  N  N  28  
AR4  "C2'"  "F2'"   SING  N  N  29  
AR4  "C2'"  "C3'"   SING  N  N  30  
AR4  "C2'"  "O2'"   SING  N  N  31  
AR4  "C3'"  "O3'"   SING  N  N  32  
AR4  "C3'"  "H3'"   SING  N  N  33  
AR4  "O3'"  "H3'1"  SING  N  N  34  
AR4  "O2'"  "HO2'"  SING  N  N  35  
AR4  OXT    HO      SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
AR4  SMILES            ACDLabs               12.01  "O=C(OC1OC(C(O)C1(F)O)CO)CCC(C(=O)O)N"  
AR4  InChI             InChI                 1.03   "InChI=1S/C10H16FNO8/c11-10(18)7(15)5(3-13)19-9(10)20-6(14)2-1-4(12)8(16)17/h4-5,7,9,13,15,18H,1-3,12H2,(H,16,17)/t4-,5+,7+,9+,10+/m0/s1"  
AR4  InChIKey          InChI                 1.03   DAZJIIGIBQQBAL-WLUSSPCKSA-N  
AR4  SMILES_CANONICAL  CACTVS                3.370  "N[C@@H](CCC(=O)O[C@H]1O[C@H](CO)[C@@H](O)[C@]1(O)F)C(O)=O"  
AR4  SMILES            CACTVS                3.370  "N[CH](CCC(=O)O[CH]1O[CH](CO)[CH](O)[C]1(O)F)C(O)=O"  
AR4  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C(CC(=O)OC1C(C(C(O1)CO)O)(O)F)C(C(=O)O)N"  
AR4  SMILES            "OpenEye OEToolkits"  1.7.6  "C(CC(=O)OC1C(C(C(O1)CO)O)(O)F)C(C(=O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
AR4  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-2-amino-5-{[(2R,3S,4R,5R)-3-fluoro-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]oxy}-5-oxopentanoic acid (non-preferred name)"  
AR4  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "2-azanyl-5-[3-fluoranyl-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]oxy-5-oxidanylidene-pentanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
AR4  "Create component"    2004-02-16  RCSB  
AR4  "Modify descriptor"   2011-06-04  RCSB  
AR4  "Other modification"  2012-12-21  RCSB  
AR4  "Modify synonyms"     2020-06-05  PDBE  
AR4  "Obsolete component"  2020-06-21  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     AR4
_pdbx_chem_comp_synonyms.name        "MODIFIED RIBOSYLATED GLUTAMYL ESTER"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
