data_804
#

_chem_comp.id                                   804
_chem_comp.name                                 "6-(1,4,5,6-tetrahydropyrimidin-2-yl)-2-[4'-(1,4,5,6-tetrahydropyrimidin-2-yl)biphenyl-4-yl]-1H-indole"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H27 N5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        DB1804
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-09-29
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       433.547
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    804
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3U05
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
804  CAA   CAA   C  0  1  Y  N  N  10.682  27.065   2.988    5.756  -1.314   0.010  CAA   804   1  
804  CAB   CAB   C  0  1  Y  N  N  12.039  25.108   2.606    5.972   1.094   0.020  CAB   804   2  
804  CAC   CAC   C  0  1  Y  N  N  10.055  26.426   4.068    4.385  -1.191   0.008  CAC   804   3  
804  CAD   CAD   C  0  1  Y  N  N  11.415  24.465   3.684    4.601   1.217   0.017  CAD   804   4  
804  CAE   CAE   C  0  1  Y  N  N   8.528  24.730   6.017    1.735   1.474   0.011  CAE   804   5  
804  CAF   CAF   C  0  1  Y  N  N  10.586  23.503   6.217    1.519  -0.934   0.001  CAF   804   6  
804  CAG   CAG   C  0  1  Y  N  N   8.027  24.032   7.154    0.364   1.598   0.008  CAG   804   7  
804  CAH   CAH   C  0  1  Y  N  N  10.096  22.820   7.329    0.148  -0.812  -0.001  CAH   804   8  
804  CAI   CAI   C  0  1  Y  N  N   6.609  20.224  12.449   -6.363   1.657  -0.010  CAI   804   9  
804  CAJ   CAJ   C  0  1  Y  N  N   6.281  21.068  11.388   -5.135   2.247  -0.004  CAJ   804  10  
804  CAK   CAK   C  0  1  Y  N  N   8.875  20.268  11.709   -5.341  -0.540  -0.015  CAK   804  11  
804  CAL   CAL   C  0  1  Y  N  N   7.158  22.290   9.436   -2.595   1.760   0.002  CAL   804  12  
804  CAM   CAM   C  0  1  N  N  N  13.855  28.556  -0.644   10.761  -0.511  -0.445  CAM   804  13  
804  CAN   CAN   C  0  1  N  N  N   8.791  17.613  16.117  -10.314  -1.492   0.434  CAN   804  14  
804  CAO   CAO   C  0  1  N  N  N  12.392  28.908  -0.524    9.989  -1.741   0.038  CAO   804  15  
804  CAP   CAP   C  0  1  N  N  N   7.648  17.111  15.275   -9.170  -2.382  -0.054  CAP   804  16  
804  CAQ   CAQ   C  0  1  N  N  N  13.991  27.064  -0.501   10.241   0.719   0.314  CAQ   804  17  
804  CAR   CAR   C  0  1  N  N  N   9.915  18.055  15.211  -10.244  -0.154  -0.318  CAR   804  18  
804  NAS   NAS   N  0  1  N  N  N  11.742  28.153   0.588    8.553  -1.487   0.016  NAS   804  19  
804  NAT   NAT   N  0  1  N  N  N   7.368  18.032  14.147   -7.906  -1.655  -0.027  NAT   804  20  
804  NAU   NAU   N  0  1  N  N  N  13.539  26.611   0.835    8.804   0.838   0.024  NAU   804  21  
804  NAV   NAV   N  0  1  N  N  N   9.494  19.101  14.240   -8.934   0.447  -0.024  NAV   804  22  
804  NAW   NAW   N  0  1  Y  N  N   9.219  21.651   9.700   -2.805  -0.459  -0.008  NAW   804  23  
804  CAX   CAX   C  0  1  N  N  N  12.306  27.061   1.163    8.033  -0.305   0.019  CAX   804  24  
804  CAY   CAY   C  0  1  N  N  N   8.257  18.950  13.706   -7.820  -0.365  -0.022  CAY   804  25  
804  CAZ   CAZ   C  0  1  Y  N  N  11.676  26.409   2.246    6.559  -0.172   0.016  CAZ   804  26  
804  CBA   CBA   C  0  1  Y  N  N   7.926  19.814  12.628   -6.480   0.261  -0.015  CBA   804  27  
804  CBB   CBB   C  0  1  Y  N  N  10.408  25.113   4.419    3.798   0.075   0.011  CBB   804  28  
804  CBC   CBC   C  0  1  Y  N  N   9.821  24.449   5.534    2.322   0.208   0.008  CBC   804  29  
804  CBD   CBD   C  0  1  Y  N  N   8.820  23.076   7.826   -0.440   0.456   0.002  CBD   804  30  
804  CBE   CBE   C  0  1  Y  N  N   8.398  22.375   8.932   -1.911   0.588  -0.001  CBE   804  31  
804  CBF   CBF   C  0  1  Y  N  N   7.222  21.484  10.529   -3.978   1.456  -0.003  CBF   804  32  
804  CBG   CBG   C  0  1  Y  N  N   8.504  21.087  10.683   -4.086   0.051  -0.009  CBG   804  33  
804  HAA   HAA   H  0  1  N  N  N  10.397  28.073   2.725    6.210  -2.294   0.012  HAA   804  34  
804  HAB   HAB   H  0  1  N  N  N  12.807  24.593   2.048    6.593   1.977   0.024  HAB   804  35  
804  HAC   HAC   H  0  1  N  N  N   9.296  26.947   4.633    3.763  -2.074   0.003  HAC   804  36  
804  HAD   HAD   H  0  1  N  N  N  11.711  23.462   3.952    4.146   2.197   0.020  HAD   804  37  
804  HAE   HAE   H  0  1  N  N  N   7.917  25.473   5.526    2.357   2.357   0.012  HAE   804  38  
804  HAF   HAF   H  0  1  N  N  N  11.588  23.294   5.874    1.974  -1.913  -0.002  HAF   804  39  
804  HAG   HAG   H  0  1  N  N  N   7.027  24.237   7.507   -0.090   2.578   0.011  HAG   804  40  
804  HAH   HAH   H  0  1  N  N  N  10.716  22.080   7.813   -0.473  -1.695  -0.006  HAH   804  41  
804  HAI   HAI   H  0  1  N  N  N   5.841  19.889  13.131   -7.252   2.270  -0.006  HAI   804  42  
804  HAJ   HAJ   H  0  1  N  N  N   5.258  21.390  11.257   -5.054   3.323   0.001  HAJ   804  43  
804  HAK   HAK   H  0  1  N  N  N   9.908  19.969  11.811   -5.435  -1.615  -0.018  HAK   804  44  
804  HAL   HAL   H  0  1  N  N  N   6.274  22.772   9.046   -2.161   2.749   0.007  HAL   804  45  
804  HAM   HAM   H  0  1  N  N  N  14.238  28.875  -1.625   11.824  -0.644  -0.243  HAM   804  46  
804  HAMA  HAMA  H  0  0  N  N  N  14.428  29.062   0.147   10.602  -0.376  -1.515  HAMA  804  47  
804  HAN   HAN   H  0  1  N  N  N   8.454  18.463  16.728  -11.269  -1.977   0.229  HAN   804  48  
804  HANA  HANA  H  0  0  N  N  N   9.144  16.807  16.777  -10.212  -1.317   1.505  HANA  804  49  
804  HAO   HAO   H  0  1  N  N  N  12.301  29.986  -0.323   10.215  -2.586  -0.613  HAO   804  50  
804  HAOA  HAOA  H  0  0  N  N  N  11.887  28.656  -1.468   10.296  -1.980   1.056  HAOA  804  51  
804  HAP   HAP   H  0  1  N  N  N   7.911  16.122  14.871   -9.095  -3.257   0.592  HAP   804  52  
804  HAPA  HAPA  H  0  0  N  N  N   6.749  17.034  15.904   -9.376  -2.706  -1.074  HAPA  804  53  
804  HAQ   HAQ   H  0  1  N  N  N  13.376  26.575  -1.270   10.393   0.585   1.385  HAQ   804  54  
804  HAQA  HAQA  H  0  0  N  N  N  15.048  26.788  -0.632   10.764   1.613  -0.027  HAQA  804  55  
804  HAR   HAR   H  0  1  N  N  N  10.723  18.465  15.835  -10.341  -0.326  -1.390  HAR   804  56  
804  HARA  HARA  H  0  0  N  N  N  10.270  17.180  14.647  -11.040   0.506   0.026  HARA  804  57  
804  HNAU  HNAU  H  0  0  N  N  N  14.090  26.031   1.434    8.406   1.704  -0.159  HNAU  804  58  
804  HNAV  HNAV  H  0  0  N  N  N  10.087  19.868  13.996   -8.855   1.395   0.164  HNAV  804  59  
804  HNAW  HNAW  H  0  0  N  N  N  10.204  21.548   9.563   -2.571  -1.401  -0.011  HNAW  804  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
804  CAA  CAC   DOUB  Y  N   1  
804  CAA  CAZ   SING  Y  N   2  
804  CAB  CAD   SING  Y  N   3  
804  CAB  CAZ   DOUB  Y  N   4  
804  CAC  CBB   SING  Y  N   5  
804  CAD  CBB   DOUB  Y  N   6  
804  CAE  CAG   DOUB  Y  N   7  
804  CAE  CBC   SING  Y  N   8  
804  CAF  CAH   SING  Y  N   9  
804  CAF  CBC   DOUB  Y  N  10  
804  CAG  CBD   SING  Y  N  11  
804  CAH  CBD   DOUB  Y  N  12  
804  CAI  CAJ   DOUB  Y  N  13  
804  CAI  CBA   SING  Y  N  14  
804  CAJ  CBF   SING  Y  N  15  
804  CAK  CBA   DOUB  Y  N  16  
804  CAK  CBG   SING  Y  N  17  
804  CAL  CBE   DOUB  Y  N  18  
804  CAL  CBF   SING  Y  N  19  
804  CAM  CAO   SING  N  N  20  
804  CAM  CAQ   SING  N  N  21  
804  CAN  CAP   SING  N  N  22  
804  CAN  CAR   SING  N  N  23  
804  CAO  NAS   SING  N  N  24  
804  CAP  NAT   SING  N  N  25  
804  CAQ  NAU   SING  N  N  26  
804  CAR  NAV   SING  N  N  27  
804  NAS  CAX   DOUB  N  N  28  
804  NAT  CAY   DOUB  N  N  29  
804  NAU  CAX   SING  N  N  30  
804  NAV  CAY   SING  N  N  31  
804  NAW  CBE   SING  Y  N  32  
804  NAW  CBG   SING  Y  N  33  
804  CAX  CAZ   SING  N  N  34  
804  CAY  CBA   SING  N  N  35  
804  CBB  CBC   SING  N  N  36  
804  CBD  CBE   SING  N  N  37  
804  CBF  CBG   DOUB  Y  N  38  
804  CAA  HAA   SING  N  N  39  
804  CAB  HAB   SING  N  N  40  
804  CAC  HAC   SING  N  N  41  
804  CAD  HAD   SING  N  N  42  
804  CAE  HAE   SING  N  N  43  
804  CAF  HAF   SING  N  N  44  
804  CAG  HAG   SING  N  N  45  
804  CAH  HAH   SING  N  N  46  
804  CAI  HAI   SING  N  N  47  
804  CAJ  HAJ   SING  N  N  48  
804  CAK  HAK   SING  N  N  49  
804  CAL  HAL   SING  N  N  50  
804  CAM  HAM   SING  N  N  51  
804  CAM  HAMA  SING  N  N  52  
804  CAN  HAN   SING  N  N  53  
804  CAN  HANA  SING  N  N  54  
804  CAO  HAO   SING  N  N  55  
804  CAO  HAOA  SING  N  N  56  
804  CAP  HAP   SING  N  N  57  
804  CAP  HAPA  SING  N  N  58  
804  CAQ  HAQ   SING  N  N  59  
804  CAQ  HAQA  SING  N  N  60  
804  CAR  HAR   SING  N  N  61  
804  CAR  HARA  SING  N  N  62  
804  NAU  HNAU  SING  N  N  63  
804  NAV  HNAV  SING  N  N  64  
804  NAW  HNAW  SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
804  SMILES            ACDLabs               12.01  "N6=C(c1cc5c(cc1)cc(c4ccc(c3ccc(C2=NCCCN2)cc3)cc4)n5)NCCC6"  
804  InChI             InChI                 1.03   "InChI=1S/C28H27N5/c1-13-29-27(30-14-1)22-9-5-20(6-10-22)19-3-7-21(8-4-19)25-17-23-11-12-24(18-26(23)33-25)28-31-15-2-16-32-28/h3-12,17-18,33H,1-2,13-16H2,(H,29,30)(H,31,32)"  
804  InChIKey          InChI                 1.03   VZIHOYLEOYSFAG-UHFFFAOYSA-N  
804  SMILES_CANONICAL  CACTVS                3.370  "C1CNC(=NC1)c2ccc(cc2)c3ccc(cc3)c4[nH]c5cc(ccc5c4)C6=NCCCN6"  
804  SMILES            CACTVS                3.370  "C1CNC(=NC1)c2ccc(cc2)c3ccc(cc3)c4[nH]c5cc(ccc5c4)C6=NCCCN6"  
804  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "c1cc(ccc1c2ccc(cc2)C3=NCCCN3)c4cc5ccc(cc5[nH]4)C6=NCCCN6"  
804  SMILES            "OpenEye OEToolkits"  1.7.2  "c1cc(ccc1c2ccc(cc2)C3=NCCCN3)c4cc5ccc(cc5[nH]4)C6=NCCCN6"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
804  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-(1,4,5,6-tetrahydropyrimidin-2-yl)-2-[4'-(1,4,5,6-tetrahydropyrimidin-2-yl)biphenyl-4-yl]-1H-indole"  
804  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "6-(1,4,5,6-tetrahydropyrimidin-2-yl)-2-[4-[4-(1,4,5,6-tetrahydropyrimidin-2-yl)phenyl]phenyl]-1H-indole"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
804  "Create component"  2011-09-29  RCSB  
804  "Initial release"   2012-09-07  RCSB  
804  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     804
_pdbx_chem_comp_synonyms.name        DB1804
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
