data_5R4
# 
_chem_comp.id                                    5R4 
_chem_comp.name                                  "3-[3-(acetyl{[(1R,2R,3S,4R)-4-(4-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2,3-dihydroxycyclopentyl]methyl}amino)prop-1-yn-1-yl]benzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H24 Cl N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-23 
_chem_comp.pdbx_modified_date                    2022-07-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        481.931 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5R4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7RKK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5R4 N15 N1  N  0 1 N N N 20.408 3.365  5.524  -1.568  -1.494 0.187  N15 5R4 1  
5R4 C23 C1  C  0 1 Y N N 17.689 8.364  6.290  -5.991  0.986  1.618  C23 5R4 2  
5R4 C24 C2  C  0 1 Y N N 16.597 9.194  6.461  -7.129  1.648  2.035  C24 5R4 3  
5R4 C30 C3  C  0 1 Y N N 16.457 6.963  4.855  -6.950  0.709  -0.579 C30 5R4 4  
5R4 C31 C4  C  0 1 N N R 21.822 0.955  3.685  1.315   -2.189 -0.072 C31 5R4 5  
5R4 C33 C5  C  0 1 N N S 21.839 -0.269 2.687  2.779   -1.848 0.278  C33 5R4 6  
5R4 C27 C6  C  0 1 N N N 14.027 7.514  4.327  -9.225  1.582  -1.086 C27 5R4 7  
5R4 C26 C7  C  0 1 Y N N 15.332 7.790  5.014  -8.099  1.369  -0.150 C26 5R4 8  
5R4 C25 C8  C  0 1 Y N N 15.387 8.937  5.831  -8.181  1.842  1.162  C25 5R4 9  
5R4 C14 C9  C  0 1 N N N 19.709 2.447  4.551  -0.503  -0.496 0.312  C14 5R4 10 
5R4 C17 C10 C  0 1 N N N 20.211 1.635  7.491  -2.821  -3.457 1.021  C17 5R4 11 
5R4 C22 C11 C  0 1 Y N N 17.669 7.206  5.473  -5.895  0.512  0.309  C22 5R4 12 
5R4 C21 C12 C  0 1 N N N 18.853 6.393  5.344  -4.709  -0.165 -0.124 C21 5R4 13 
5R4 C19 C13 C  0 1 N N N 20.860 4.697  5.070  -2.519  -1.416 -0.924 C19 5R4 14 
5R4 C12 C14 C  0 1 N N N 19.508 0.202  3.301  1.766   0.197  -0.529 C12 5R4 15 
5R4 C02 C15 C  0 1 Y N N 18.880 -4.983 0.701  7.407   1.658  -0.108 C02 5R4 16 
5R4 C04 C16 C  0 1 Y N N 19.357 -5.250 2.938  7.078   0.628  -2.142 C04 5R4 17 
5R4 C06 C17 C  0 1 Y N N 19.671 -3.164 2.025  5.369   0.469  -0.616 C06 5R4 18 
5R4 C07 C18 C  0 1 Y N N 19.241 -3.638 0.755  6.141   1.226  0.289  C07 5R4 19 
5R4 C08 C19 C  0 1 Y N N 19.308 -2.525 -0.138 5.331   1.361  1.500  C08 5R4 20 
5R4 C09 C20 C  0 1 Y N N 19.759 -1.416 0.541  4.178   0.713  1.270  C09 5R4 21 
5R4 C11 C21 C  0 1 N N R 20.473 -0.942 2.979  3.094   -0.599 -0.582 C11 5R4 22 
5R4 C13 C22 C  0 1 N N R 20.369 1.065  4.254  0.672   -0.889 -0.586 C13 5R4 23 
5R4 C16 C23 C  0 1 N N N 20.647 2.969  6.928  -1.669  -2.488 1.092  C16 5R4 24 
5R4 C20 C24 C  0 1 N N N 19.790 5.674  5.211  -3.738  -0.720 -0.479 C20 5R4 25 
5R4 N03 N2  N  0 1 Y N N 18.922 -5.811 1.742  7.830   1.339  -1.321 N03 5R4 26 
5R4 N05 N3  N  0 1 Y N N 19.733 -3.978 3.137  5.879   0.198  -1.813 N05 5R4 27 
5R4 N10 N4  N  0 1 Y N N 19.983 -1.818 1.893  4.188   0.176  0.009  N10 5R4 28 
5R4 N28 N5  N  0 1 N N N 13.420 8.495  3.626  -10.336 2.220  -0.669 N28 5R4 29 
5R4 O18 O1  O  0 1 N N N 21.205 3.717  7.691  -0.834  -2.602 1.964  O18 5R4 30 
5R4 O29 O2  O  0 1 N N N 13.514 6.373  4.405  -9.147  1.181  -2.230 O29 5R4 31 
5R4 O32 O3  O  0 1 N N N 22.718 0.658  4.710  1.277   -3.190 -1.091 O32 5R4 32 
5R4 O34 O4  O  0 1 N N N 22.886 -1.098 3.101  3.643   -2.930 -0.074 O34 5R4 33 
5R4 CL1 CL1 CL 0 0 N N N 18.320 -5.716 -0.815 8.400   2.599  0.961  CL1 5R4 34 
5R4 H1  H1  H  0 1 N N N 18.605 8.611  6.806  -5.172  0.838  2.307  H1  5R4 35 
5R4 H2  H2  H  0 1 N N N 16.687 10.061 7.098  -7.197  2.016  3.048  H2  5R4 36 
5R4 H3  H3  H  0 1 N N N 16.370 6.095  4.219  -6.882  0.341  -1.592 H3  5R4 37 
5R4 H4  H4  H  0 1 N N N 22.086 1.878  3.147  0.790   -2.540 0.816  H4  5R4 38 
5R4 H5  H5  H  0 1 N N N 21.914 0.067  1.642  2.872   -1.614 1.339  H5  5R4 39 
5R4 H6  H6  H  0 1 N N N 14.531 9.583  5.960  -9.068  2.361  1.493  H6  5R4 40 
5R4 H7  H7  H  0 1 N N N 19.627 2.984  3.594  -0.882  0.480  0.008  H7  5R4 41 
5R4 H8  H8  H  0 1 N N N 18.703 2.251  4.949  -0.169  -0.449 1.348  H8  5R4 42 
5R4 H9  H9  H  0 1 N N N 20.493 1.575  8.553  -3.453  -3.209 0.168  H9  5R4 43 
5R4 H10 H10 H  0 1 N N N 19.120 1.536  7.395  -2.437  -4.470 0.906  H10 5R4 44 
5R4 H11 H11 H  0 1 N N N 20.703 0.824  6.935  -3.407  -3.393 1.938  H11 5R4 45 
5R4 H12 H12 H  0 1 N N N 21.158 4.637  4.013  -2.068  -0.866 -1.750 H12 5R4 46 
5R4 H13 H13 H  0 1 N N N 21.721 5.013  5.677  -2.776  -2.422 -1.254 H13 5R4 47 
5R4 H14 H14 H  0 1 N N N 19.228 0.760  2.395  1.696   0.761  0.401  H14 5R4 48 
5R4 H15 H15 H  0 1 N N N 18.600 -0.166 3.801  1.686   0.865  -1.386 H15 5R4 49 
5R4 H16 H16 H  0 1 N N N 19.396 -5.906 3.795  7.463   0.391  -3.123 H16 5R4 50 
5R4 H17 H17 H  0 1 N N N 19.045 -2.550 -1.185 5.608   1.881  2.405  H17 5R4 51 
5R4 H18 H18 H  0 1 N N N 19.914 -0.429 0.130  3.364   0.627  1.974  H18 5R4 52 
5R4 H19 H19 H  0 1 N N N 20.590 -1.549 3.889  3.332   -0.886 -1.606 H19 5R4 53 
5R4 H20 H20 H  0 1 N N N 20.384 0.529  5.214  0.330   -1.022 -1.612 H20 5R4 54 
5R4 H21 H21 H  0 1 N N N 12.552 8.315  3.162  -11.074 2.360  -1.282 H21 5R4 55 
5R4 H22 H22 H  0 1 N N N 13.838 9.402  3.570  -10.398 2.540  0.245  H22 5R4 56 
5R4 H23 H23 H  0 1 N N N 22.736 1.375  5.333  1.668   -4.034 -0.828 H23 5R4 57 
5R4 H24 H24 H  0 1 N N N 23.717 -0.675 2.917  3.489   -3.738 0.434  H24 5R4 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5R4 CL1 C02 SING N N 1  
5R4 C08 C09 DOUB Y N 2  
5R4 C08 C07 SING Y N 3  
5R4 C09 N10 SING Y N 4  
5R4 C02 C07 DOUB Y N 5  
5R4 C02 N03 SING Y N 6  
5R4 C07 C06 SING Y N 7  
5R4 N03 C04 DOUB Y N 8  
5R4 N10 C06 SING Y N 9  
5R4 N10 C11 SING N N 10 
5R4 C06 N05 DOUB Y N 11 
5R4 C33 C11 SING N N 12 
5R4 C33 O34 SING N N 13 
5R4 C33 C31 SING N N 14 
5R4 C04 N05 SING Y N 15 
5R4 C11 C12 SING N N 16 
5R4 C12 C13 SING N N 17 
5R4 N28 C27 SING N N 18 
5R4 C31 C13 SING N N 19 
5R4 C31 O32 SING N N 20 
5R4 C13 C14 SING N N 21 
5R4 C27 O29 DOUB N N 22 
5R4 C27 C26 SING N N 23 
5R4 C14 N15 SING N N 24 
5R4 C30 C26 DOUB Y N 25 
5R4 C30 C22 SING Y N 26 
5R4 C26 C25 SING Y N 27 
5R4 C19 C20 SING N N 28 
5R4 C19 N15 SING N N 29 
5R4 C20 C21 TRIP N N 30 
5R4 C21 C22 SING N N 31 
5R4 C22 C23 DOUB Y N 32 
5R4 N15 C16 SING N N 33 
5R4 C25 C24 DOUB Y N 34 
5R4 C23 C24 SING Y N 35 
5R4 C16 C17 SING N N 36 
5R4 C16 O18 DOUB N N 37 
5R4 C23 H1  SING N N 38 
5R4 C24 H2  SING N N 39 
5R4 C30 H3  SING N N 40 
5R4 C31 H4  SING N N 41 
5R4 C33 H5  SING N N 42 
5R4 C25 H6  SING N N 43 
5R4 C14 H7  SING N N 44 
5R4 C14 H8  SING N N 45 
5R4 C17 H9  SING N N 46 
5R4 C17 H10 SING N N 47 
5R4 C17 H11 SING N N 48 
5R4 C19 H12 SING N N 49 
5R4 C19 H13 SING N N 50 
5R4 C12 H14 SING N N 51 
5R4 C12 H15 SING N N 52 
5R4 C04 H16 SING N N 53 
5R4 C08 H17 SING N N 54 
5R4 C09 H18 SING N N 55 
5R4 C11 H19 SING N N 56 
5R4 C13 H20 SING N N 57 
5R4 N28 H21 SING N N 58 
5R4 N28 H22 SING N N 59 
5R4 O32 H23 SING N N 60 
5R4 O34 H24 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5R4 SMILES           ACDLabs              12.01 "NC(=O)c1cccc(c1)C#CCN(CC1CC(C(O)C1O)n1ccc2c1ncnc2Cl)C(C)=O"                                                                                                                                                       
5R4 InChI            InChI                1.03  "InChI=1S/C24H24ClN5O4/c1-14(31)29(8-3-5-15-4-2-6-16(10-15)23(26)34)12-17-11-19(21(33)20(17)32)30-9-7-18-22(25)27-13-28-24(18)30/h2,4,6-7,9-10,13,17,19-21,32-33H,8,11-12H2,1H3,(H2,26,34)/t17-,19-,20-,21+/m1/s1" 
5R4 InChIKey         InChI                1.03  AHVJTPYPUIHNLS-WLRLJWMZSA-N                                                                                                                                                                                        
5R4 SMILES_CANONICAL CACTVS               3.385 "CC(=O)N(CC#Cc1cccc(c1)C(N)=O)C[C@H]2C[C@H]([C@H](O)[C@@H]2O)n3ccc4c(Cl)ncnc34"                                                                                                                                    
5R4 SMILES           CACTVS               3.385 "CC(=O)N(CC#Cc1cccc(c1)C(N)=O)C[CH]2C[CH]([CH](O)[CH]2O)n3ccc4c(Cl)ncnc34"                                                                                                                                         
5R4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N(CC#Cc1cccc(c1)C(=O)N)C[C@H]2C[C@H]([C@@H]([C@@H]2O)O)n3ccc4c3ncnc4Cl"                                                                                                                                     
5R4 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)N(CC#Cc1cccc(c1)C(=O)N)CC2CC(C(C2O)O)n3ccc4c3ncnc4Cl"                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5R4 "SYSTEMATIC NAME" ACDLabs              12.01 "3-[3-(acetyl{[(1R,2R,3S,4R)-4-(4-chloro-7H-pyrrolo[2,3-d]pyrimidin-7-yl)-2,3-dihydroxycyclopentyl]methyl}amino)prop-1-yn-1-yl]benzamide"               
5R4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[3-[[(1~{R},2~{R},3~{S},4~{R})-4-(4-chloranylpyrrolo[2,3-d]pyrimidin-7-yl)-2,3-bis(oxidanyl)cyclopentyl]methyl-ethanoyl-amino]prop-1-ynyl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5R4 "Create component" 2021-07-23 RCSB 
5R4 "Initial release"  2022-07-20 RCSB 
# 
