data_334
#

_chem_comp.id                                   334
_chem_comp.name                                 "2-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL}-6-BROMO-4-METHYLBENZENOLATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H13 Br N4 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        CRA_9334
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-03-14
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       345.194
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    334
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1O3J
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
334  C1      C1      C    0  1  Y  N  N  44.198  -3.084  26.099  -4.941  -0.218  -0.057  C1      334   1  
334  C2      C2      C    0  1  Y  N  N  44.630  -1.746  26.174  -4.629  -1.372   0.673  C2      334   2  
334  C3      C3      C    0  1  Y  N  N  44.589  -1.042  27.369  -3.336  -1.647   1.013  C3      334   3  
334  C4      C4      C    0  1  Y  N  N  44.115  -1.684  28.481  -2.315  -0.782   0.636  C4      334   4  
334  C5      C5      C    0  1  Y  N  N  43.679  -2.955  28.474  -2.611   0.383  -0.098  C5      334   5  
334  C6      C6      C    0  1  Y  N  N  43.705  -3.702  27.284  -3.934   0.660  -0.443  C6      334   6  
334  C7      C7      C    0  1  N  N  N  44.269  -3.764  24.858  -6.346   0.067  -0.419  C7      334   7  
334  N1      N1      N    0  1  N  N  N  43.892  -5.021  24.768  -7.312  -0.773  -0.051  N1      334   8  
334  N2      N2      N    1  1  N  N  N  44.716  -3.128  23.796  -6.645   1.164  -1.113  N2      334   9  
334  N3      N3      N    0  1  Y  N  N  43.977  -1.276  29.682  -0.949  -0.782   0.823  N3      334  10  
334  N4      N4      N    0  1  Y  N  N  43.269  -3.348  29.667  -1.438   1.028  -0.316  N4      334  11  
334  C8      C8      C    0  1  Y  N  N  43.479  -2.248  30.387  -0.456   0.344   0.219  C8      334  12  
334  "C1'"   "C1'"   C    0  1  Y  N  N  43.255  -2.095  31.779   0.969   0.734   0.182  "C1'"   334  13  
334  "C2'"   "C2'"   C    0  1  Y  N  N  42.914  -3.190  32.588   1.336   2.070   0.350  "C2'"   334  14  
334  "C3'"   "C3'"   C    0  1  Y  N  N  42.699  -3.016  33.966   2.667   2.428   0.310  "C3'"   334  15  
334  "CV'"   "C31'"  C    0  1  N  N  N  42.324  -4.195  34.877   3.061   3.872   0.486  "CV'"   334  16  
334  "C4'"   "C4'"   C    0  1  Y  N  N  42.826  -1.758  34.546   3.643   1.467   0.114  "C4'"   334  17  
334  "C5'"   "C5'"   C    0  1  Y  N  N  43.169  -0.652  33.762   3.293   0.139  -0.049  "C5'"   334  18  
334  "C6'"   "C6'"   C    0  1  Y  N  N  43.376  -0.822  32.386   1.959  -0.237  -0.016  "C6'"   334  19  
334  "O6'"   "O6'"   O   -1  1  N  N  N  43.672   0.299  31.629   1.614  -1.540  -0.175  "O6'"   334  20  
334  "BR5'"  "BR5'"  BR   0  0  N  N  N  43.427   1.116  34.572   4.636  -1.165  -0.317  "BR5'"  334  21  
334  HC2     HC2     H    0  1  N  N  N  45.007  -1.239  25.306  -5.417  -2.049   0.968  HC2     334  22  
334  HC3     HC3     H    0  1  N  N  N  44.916  -0.017  27.429  -3.105  -2.539   1.576  HC3     334  23  
334  HC6     HC6     H    0  1  N  N  N  43.354  -4.724  27.279  -4.174   1.550  -1.006  HC6     334  24  
334  HH11    HH11    H    0  0  N  N  N  43.578  -5.492  25.603  -7.094  -1.572   0.454  HH11    334  25  
334  HH12    HH12    H    0  0  N  N  N  43.906  -5.578  23.939  -8.234  -0.586  -0.289  HH12    334  26  
334  HH21    HH21    H    0  0  N  N  N  45.006  -2.164  23.869  -7.567   1.351  -1.351  HH21    334  27  
334  HH22    HH22    H    0  0  N  N  N  44.814  -3.556  22.903  -5.942   1.776  -1.381  HH22    334  28  
334  HN3     HN3     H    0  1  N  N  N  44.193  -0.395  30.049  -0.433  -1.455   1.294  HN3     334  29  
334  "HC2'"  "HC2'"  H    0  0  N  N  N  42.814  -4.174  32.151   0.578   2.823   0.504  "HC2'"  334  30  
334  "H32'"  "H32'"  H    0  0  N  N  N  41.440  -3.943  35.447   3.091   4.362  -0.487  "H32'"  334  31  
334  "H33'"  "H33'"  H    0  0  N  N  N  42.128  -5.080  34.289   2.330   4.373   1.122  "H33'"  334  32  
334  "H34'"  "H34'"  H    0  0  N  N  N  43.141  -4.386  35.555   4.045   3.926   0.951  "H34'"  334  33  
334  "HC4'"  "HC4'"  H    0  0  N  N  N  42.648  -1.645  35.606   4.684   1.755   0.088  "HC4'"  334  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
334  C1     C2      DOUB  Y  N   1  
334  C1     C6      SING  Y  N   2  
334  C1     C7      SING  N  N   3  
334  C2     C3      SING  Y  N   4  
334  C2     HC2     SING  N  N   5  
334  C3     C4      DOUB  Y  N   6  
334  C3     HC3     SING  N  N   7  
334  C4     C5      SING  Y  N   8  
334  C4     N3      SING  Y  N   9  
334  C5     C6      DOUB  Y  N  10  
334  C5     N4      SING  Y  N  11  
334  C6     HC6     SING  N  N  12  
334  C7     N1      SING  N  N  13  
334  C7     N2      DOUB  N  N  14  
334  N1     HH11    SING  N  N  15  
334  N1     HH12    SING  N  N  16  
334  N2     HH21    SING  N  N  17  
334  N2     HH22    SING  N  N  18  
334  N3     C8      SING  Y  N  19  
334  N3     HN3     SING  N  N  20  
334  N4     C8      DOUB  Y  N  21  
334  C8     "C1'"   SING  Y  N  22  
334  "C1'"  "C2'"   DOUB  Y  N  23  
334  "C1'"  "C6'"   SING  Y  N  24  
334  "C2'"  "C3'"   SING  Y  N  25  
334  "C2'"  "HC2'"  SING  N  N  26  
334  "C3'"  "CV'"   SING  N  N  27  
334  "C3'"  "C4'"   DOUB  Y  N  28  
334  "CV'"  "H32'"  SING  N  N  29  
334  "CV'"  "H33'"  SING  N  N  30  
334  "CV'"  "H34'"  SING  N  N  31  
334  "C4'"  "C5'"   SING  Y  N  32  
334  "C4'"  "HC4'"  SING  N  N  33  
334  "C5'"  "C6'"   DOUB  Y  N  34  
334  "C5'"  "BR5'"  SING  N  N  35  
334  "C6'"  "O6'"   SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
334  SMILES            ACDLabs               10.04  "Brc3cc(cc(c2nc1cc(ccc1n2)\C(=[NH2+])N)c3[O-])C"  
334  SMILES_CANONICAL  CACTVS                3.341  "Cc1cc(Br)c([O-])c(c1)c2[nH]c3ccc(cc3n2)C(N)=[NH2+]"  
334  SMILES            CACTVS                3.341  "Cc1cc(Br)c([O-])c(c1)c2[nH]c3ccc(cc3n2)C(N)=[NH2+]"  
334  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1cc(c(c(c1)Br)[O-])c2[nH]c3ccc(cc3n2)C(=[NH2+])N"  
334  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1cc(c(c(c1)Br)[O-])c2[nH]c3ccc(cc3n2)C(=[NH2+])N"  
334  InChI             InChI                 1.03   "InChI=1S/C15H13BrN4O/c1-7-4-9(13(21)10(16)5-7)15-19-11-3-2-8(14(17)18)6-12(11)20-15/h2-6,21H,1H3,(H3,17,18)(H,19,20)"  
334  InChIKey          InChI                 1.03   XKCHOMIJYLHXLI-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
334  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-{5-[amino(iminio)methyl]-1H-benzimidazol-2-yl}-6-bromo-4-methylphenolate"  
334  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[5-(amino-azaniumylidene-methyl)-1H-benzimidazol-2-yl]-6-bromo-4-methyl-phenolate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
334  "Create component"      2003-03-14  RCSB  
334  "Modify aromatic_flag"  2011-06-04  RCSB  
334  "Modify descriptor"     2011-06-04  RCSB  
334  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     334
_pdbx_chem_comp_synonyms.name        CRA_9334
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
