data_2U4
# 
_chem_comp.id                                    2U4 
_chem_comp.name                                  "(4Z,8S,11E,14S)-5-(2-amino-1,3-thiazol-4-yl)-14-(5,6-dihydroxy-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)-8-formyl-2-methyl-6-oxo-3,10-dioxa-4,7,11-triazatetradeca-4,11-diene-2,12,14-tricarboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H24 N6 O14 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-02-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        664.555 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2U4 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4OON 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2U4 C41 C41 C 0 1 Y N N N N N -41.127 12.573 -4.630 5.448  2.891  0.260  C41 2U4 1  
2U4 C42 C42 C 0 1 Y N N N N N -41.899 10.471 -2.901 2.867  3.250  -0.751 C42 2U4 2  
2U4 C7  C7  C 0 1 Y N N N N N -33.645 10.961 7.763  -4.385 -3.000 -0.440 C7  2U4 3  
2U4 C40 C40 C 0 1 Y N N N N N -40.222 12.062 -3.693 4.720  1.797  -0.183 C40 2U4 4  
2U4 C39 C39 C 0 1 Y N N N N N -40.600 10.985 -2.836 3.417  1.979  -0.693 C39 2U4 5  
2U4 C44 C44 C 0 1 Y N N N N N -42.428 12.062 -4.677 4.888  4.161  0.204  C44 2U4 6  
2U4 C43 C43 C 0 1 Y N N N N N -42.813 11.012 -3.818 3.599  4.339  -0.295 C43 2U4 7  
2U4 C8  C8  C 0 1 Y N N N N N -34.998 10.964 7.653  -3.530 -2.060 0.011  C8  2U4 8  
2U4 C10 C10 C 0 1 Y N N N N N -34.890 11.978 9.646  -2.032 -3.726 -0.044 C10 2U4 9  
2U4 C35 C35 C 0 1 N N N N N N -38.801 12.340 -3.383 4.987  0.348  -0.265 C35 2U4 10 
2U4 C36 C36 C 0 1 N N N N N N -39.387 10.631 -2.054 2.939  0.633  -1.067 C36 2U4 11 
2U4 C25 C25 C 0 1 N N N N N N -32.944 10.436 2.957  -0.178 1.680  0.417  C25 2U4 12 
2U4 C12 C12 C 0 1 N N N N N N -35.743 10.415 6.484  -3.949 -0.665 0.264  C12 2U4 13 
2U4 C1  C1  C 0 1 N N N N N N -35.319 11.990 -0.063 2.911  -2.119 1.254  C1  2U4 14 
2U4 C13 C13 C 0 1 N N N N N N -34.950 9.672  5.484  -2.997 0.296  0.870  C13 2U4 15 
2U4 C30 C30 C 0 1 N N N N N N -34.264 12.868 -0.584 4.028  -2.864 1.864  C30 2U4 16 
2U4 C4  C4  C 0 1 N N N N N N -36.482 10.046 -2.151 3.568  -1.954 -2.491 C4  2U4 17 
2U4 C17 C17 C 0 1 N N N N N N -40.096 10.437 5.864  -7.149 2.830  -0.097 C17 2U4 18 
2U4 C18 C18 C 0 1 N N N N N N -39.463 10.096 3.478  -7.823 0.546  0.594  C18 2U4 19 
2U4 C19 C19 C 0 1 N N N N N N -38.850 12.210 4.537  -7.080 0.984  -1.751 C19 2U4 20 
2U4 C2  C2  C 0 1 N N N N N N -36.779 12.019 -0.499 2.624  -2.262 -0.218 C2  2U4 21 
2U4 C28 C28 C 0 1 N N N N N N -34.809 9.105  1.945  0.380  0.190  2.319  C28 2U4 22 
2U4 C24 C24 C 0 1 N N S N N N -34.060 9.472  3.230  -0.749 0.913  1.581  C24 2U4 23 
2U4 C3  C3  C 0 1 N N S N N N -36.989 11.444 -1.914 3.798  -1.701 -1.023 C3  2U4 24 
2U4 C16 C16 C 0 1 N N N N N N -39.021 10.707 4.812  -6.870 1.361  -0.283 C16 2U4 25 
2U4 N9  N9  N 0 1 Y N N N N N -35.626 11.512 8.689  -2.281 -2.480 0.212  N9  2U4 26 
2U4 N14 N14 N 0 1 N N N N N N -37.032 10.625 6.318  -5.154 -0.280 -0.046 N14 2U4 27 
2U4 N26 N26 N 0 1 N N N N N N -34.874 11.161 0.811  2.177  -1.343 1.983  N26 2U4 28 
2U4 N34 N34 N 0 1 N N N N N N -38.375 11.473 -2.423 3.907  -0.259 -0.788 N34 2U4 29 
2U4 N11 N11 N 0 1 N N N N N N -35.397 12.575 10.785 -0.801 -4.342 0.104  N11 2U4 30 
2U4 N23 N23 N 0 1 N N N N N N -34.912 10.120 4.218  -1.718 -0.070 1.089  N23 2U4 31 
2U4 O31 O31 O 0 1 N N N N N N -34.415 14.076 -0.628 4.284  -2.736 3.181  O31 2U4 32 
2U4 O33 O33 O 0 1 N N N N N N -36.483 9.206  -1.255 3.437  -3.211 -2.942 O33 2U4 33 
2U4 O20 O20 O 0 1 N N N N N N -40.045 9.396  6.519  -8.362 3.326  -0.389 O20 2U4 34 
2U4 O37 O37 O 0 1 N N N N N N -38.150 13.240 -3.897 6.012  -0.205 0.082  O37 2U4 35 
2U4 O38 O38 O 0 1 N N N N N N -39.343 9.732  -1.220 1.853  0.374  -1.545 O38 2U4 36 
2U4 O29 O29 O 0 1 N N N N N N -33.056 11.604 3.244  -0.543 1.432  -0.707 O29 2U4 37 
2U4 O22 O22 O 0 1 N N N N N N -34.318 8.696  5.846  -3.369 1.413  1.169  O22 2U4 38 
2U4 O32 O32 O 0 1 N N N N N N -33.196 12.362 -0.920 4.717  -3.593 1.179  O32 2U4 39 
2U4 O5  O5  O 0 1 N N N N N N -36.144 9.759  -3.291 3.501  -1.026 -3.261 O5  2U4 40 
2U4 O21 O21 O 0 1 N N N N N N -41.022 11.229 6.074  -6.281 3.563  0.314  O21 2U4 41 
2U4 O45 O45 O 0 1 N N N N N N -43.325 12.587 -5.554 5.599  5.233  0.638  O45 2U4 42 
2U4 O46 O46 O 0 1 N N N N N N -44.079 10.514 -3.870 3.060  5.585  -0.346 O46 2U4 43 
2U4 O27 O27 O 0 1 N N N N N N -35.629 10.182 1.488  1.104  -0.627 1.398  O27 2U4 44 
2U4 O15 O15 O 0 1 N N N N N N -37.753 10.105 5.189  -5.520 1.081  0.092  O15 2U4 45 
2U4 S6  S6  S 0 1 Y N N N N N -33.188 11.721 9.286  -3.501 -4.515 -0.608 S6  2U4 46 
2U4 H1  H1  H 0 1 N N N N N N -40.824 13.355 -5.311 6.446  2.755  0.652  H1  2U4 47 
2U4 H2  H2  H 0 1 N N N N N N -42.197 9.663  -2.250 1.870  3.392  -1.140 H2  2U4 48 
2U4 H3  H3  H 0 1 N N N N N N -32.958 10.557 7.034  -5.432 -2.851 -0.656 H3  2U4 49 
2U4 H4  H4  H 0 1 N N N N N N -32.032 10.083 2.500  0.558  2.452  0.588  H4  2U4 50 
2U4 H5  H5  H 0 1 N N N N N N -39.606 9.012  3.600  -7.621 -0.516 0.459  H5  2U4 51 
2U4 H6  H6  H 0 1 N N N N N N -40.410 10.557 3.159  -7.673 0.815  1.640  H6  2U4 52 
2U4 H7  H7  H 0 1 N N N N N N -38.691 10.280 2.717  -8.853 0.760  0.308  H7  2U4 53 
2U4 H8  H8  H 0 1 N N N N N N -38.531 12.718 5.459  -8.110 1.197  -2.037 H8  2U4 54 
2U4 H9  H9  H 0 1 N N N N N N -38.089 12.355 3.756  -6.401 1.565  -2.376 H9  2U4 55 
2U4 H10 H10 H 0 1 N N N N N N -39.808 12.632 4.199  -6.878 -0.079 -1.886 H10 2U4 56 
2U4 H11 H11 H 0 1 N N N N N N -37.129 13.062 -0.487 2.488  -3.316 -0.461 H11 2U4 57 
2U4 H12 H12 H 0 1 N N N N N N -37.371 11.426 0.213  1.717  -1.711 -0.467 H12 2U4 58 
2U4 H13 H13 H 0 1 N N N N N N -35.446 8.230  2.141  1.053  0.925  2.760  H13 2U4 59 
2U4 H14 H14 H 0 1 N N N N N N -34.076 8.858  1.163  -0.042 -0.435 3.106  H14 2U4 60 
2U4 H15 H15 H 0 1 N N N N N N -33.637 8.552  3.660  -1.246 1.603  2.263  H15 2U4 61 
2U4 H16 H16 H 0 1 N N N N N N -36.404 12.092 -2.583 4.720  -2.190 -0.710 H16 2U4 62 
2U4 H17 H17 H 0 1 N N N N N N -36.396 12.583 10.741 -0.039 -3.832 0.422  H17 2U4 63 
2U4 H18 H18 H 0 1 N N N N N N -35.103 12.060 11.590 -0.700 -5.282 -0.111 H18 2U4 64 
2U4 H19 H19 H 0 1 N N N N N N -35.473 10.904 3.952  -1.440 -0.984 0.922  H19 2U4 65 
2U4 H20 H20 H 0 1 N N N N N N -33.617 14.484 -0.942 5.026  -3.244 3.535  H20 2U4 66 
2U4 H21 H21 H 0 1 N N N N N N -36.194 8.371  -1.603 3.291  -3.324 -3.891 H21 2U4 67 
2U4 H22 H22 H 0 1 N N N N N N -40.777 9.366  7.124  -8.493 4.274  -0.254 H22 2U4 68 
2U4 H23 H23 H 0 1 N N N N N N -44.157 12.137 -5.465 6.135  5.653  -0.049 H23 2U4 69 
2U4 H24 H24 H 0 1 N N N N N N -44.172 9.817  -3.231 3.234  6.055  -1.173 H24 2U4 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2U4 O45 C44 SING N N 1  
2U4 C44 C41 DOUB Y N 2  
2U4 C44 C43 SING Y N 3  
2U4 C41 C40 SING Y N 4  
2U4 O37 C35 DOUB N N 5  
2U4 O46 C43 SING N N 6  
2U4 C43 C42 DOUB Y N 7  
2U4 C40 C35 SING N N 8  
2U4 C40 C39 DOUB Y N 9  
2U4 C35 N34 SING N N 10 
2U4 O5  C4  DOUB N N 11 
2U4 C42 C39 SING Y N 12 
2U4 C39 C36 SING N N 13 
2U4 N34 C36 SING N N 14 
2U4 N34 C3  SING N N 15 
2U4 C4  C3  SING N N 16 
2U4 C4  O33 SING N N 17 
2U4 C36 O38 DOUB N N 18 
2U4 C3  C2  SING N N 19 
2U4 O32 C30 DOUB N N 20 
2U4 O31 C30 SING N N 21 
2U4 C30 C1  SING N N 22 
2U4 C2  C1  SING N N 23 
2U4 C1  N26 DOUB N E 24 
2U4 N26 O27 SING N N 25 
2U4 O27 C28 SING N N 26 
2U4 C28 C24 SING N N 27 
2U4 C25 C24 SING N N 28 
2U4 C25 O29 DOUB N N 29 
2U4 C24 N23 SING N N 30 
2U4 C18 C16 SING N N 31 
2U4 N23 C13 SING N N 32 
2U4 C19 C16 SING N N 33 
2U4 C16 O15 SING N N 34 
2U4 C16 C17 SING N N 35 
2U4 O15 N14 SING N N 36 
2U4 C13 O22 DOUB N N 37 
2U4 C13 C12 SING N N 38 
2U4 C17 O21 DOUB N N 39 
2U4 C17 O20 SING N N 40 
2U4 N14 C12 DOUB N Z 41 
2U4 C12 C8  SING N N 42 
2U4 C8  C7  DOUB Y N 43 
2U4 C8  N9  SING Y N 44 
2U4 C7  S6  SING Y N 45 
2U4 N9  C10 DOUB Y N 46 
2U4 S6  C10 SING Y N 47 
2U4 C10 N11 SING N N 48 
2U4 C41 H1  SING N N 49 
2U4 C42 H2  SING N N 50 
2U4 C7  H3  SING N N 51 
2U4 C25 H4  SING N N 52 
2U4 C18 H5  SING N N 53 
2U4 C18 H6  SING N N 54 
2U4 C18 H7  SING N N 55 
2U4 C19 H8  SING N N 56 
2U4 C19 H9  SING N N 57 
2U4 C19 H10 SING N N 58 
2U4 C2  H11 SING N N 59 
2U4 C2  H12 SING N N 60 
2U4 C28 H13 SING N N 61 
2U4 C28 H14 SING N N 62 
2U4 C24 H15 SING N N 63 
2U4 C3  H16 SING N N 64 
2U4 N11 H17 SING N N 65 
2U4 N11 H18 SING N N 66 
2U4 N23 H19 SING N N 67 
2U4 O31 H20 SING N N 68 
2U4 O33 H21 SING N N 69 
2U4 O20 H22 SING N N 70 
2U4 O45 H23 SING N N 71 
2U4 O46 H24 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2U4 SMILES           ACDLabs              12.01 "O=C(O)C(N2C(=O)c1cc(O)c(O)cc1C2=O)CC(=N\OCC(C=O)NC(=O)C(=N\OC(C(=O)O)(C)C)/c3nc(sc3)N)/C(=O)O"                                                                                                                                                                                 
2U4 InChI            InChI                1.03  "InChI=1S/C25H24N6O14S/c1-25(2,23(42)43)45-30-17(13-8-46-24(26)28-13)18(35)27-9(6-32)7-44-29-12(21(38)39)5-14(22(40)41)31-19(36)10-3-15(33)16(34)4-11(10)20(31)37/h3-4,6,8-9,14,33-34H,5,7H2,1-2H3,(H2,26,28)(H,27,35)(H,38,39)(H,40,41)(H,42,43)/b29-12+,30-17-/t9-,14+/m1/s1" 
2U4 InChIKey         InChI                1.03  VQOKWLNYKDCOTA-RCFVXGSMSA-N                                                                                                                                                                                                                                                     
2U4 SMILES_CANONICAL CACTVS               3.385 "CC(C)(O\N=C(C(=O)N[C@@H](CO/N=C(C[C@H](N1C(=O)c2cc(O)c(O)cc2C1=O)C(O)=O)/C(O)=O)C=O)\c3csc(N)n3)C(O)=O"                                                                                                                                                                        
2U4 SMILES           CACTVS               3.385 "CC(C)(ON=C(C(=O)N[CH](CON=C(C[CH](N1C(=O)c2cc(O)c(O)cc2C1=O)C(O)=O)C(O)=O)C=O)c3csc(N)n3)C(O)=O"                                                                                                                                                                               
2U4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(C(=O)O)O/N=C(/c1csc(n1)N)\C(=O)N[C@@H](CO/N=C(\C[C@@H](C(=O)O)N2C(=O)c3cc(c(cc3C2=O)O)O)/C(=O)O)C=O"                                                                                                                                                                     
2U4 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)(C(=O)O)ON=C(c1csc(n1)N)C(=O)NC(CON=C(CC(C(=O)O)N2C(=O)c3cc(c(cc3C2=O)O)O)C(=O)O)C=O"                                                                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2U4 "SYSTEMATIC NAME" ACDLabs              12.01 "(4Z,8S,11E,14S)-5-(2-amino-1,3-thiazol-4-yl)-14-(5,6-dihydroxy-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)-8-formyl-2-methyl-6-oxo-3,10-dioxa-4,7,11-triazatetradeca-4,11-diene-2,12,14-tricarboxylic acid"                                      
2U4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2E,4S)-2-[(2S)-2-[[(2Z)-2-(2-azanyl-1,3-thiazol-4-yl)-2-(2-methyl-1-oxidanyl-1-oxidanylidene-propan-2-yl)oxyimino-ethanoyl]amino]-3-oxidanylidene-propoxy]imino-4-[5,6-bis(oxidanyl)-1,3-bis(oxidanylidene)isoindol-2-yl]pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2U4 "Create component" 2014-02-04 RCSB 
2U4 "Initial release"  2014-05-07 RCSB 
2U4 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            2U4 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C25 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
