data_XR3
# 
_chem_comp.id                                    XR3 
_chem_comp.name                                  "N-[[(3S)-1-oxidanyl-3H-2,1-benzoxaborol-3-yl]methyl]-4-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]benzenesulfonamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H13 B N2 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     2023-11-08 
_chem_comp.pdbx_modified_date                    2024-11-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        348.139 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XR3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        8R30 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
XR3 C11 C1  C 0  1 Y N N -11.746 -5.247 7.387  ? ? ? C11 XR3 1  N N N 
XR3 C15 C2  C 0  1 Y N N -10.482 -5.740 7.156  ? ? ? C15 XR3 2  N N N 
XR3 C10 C3  C 0  1 Y N N -11.967 -3.985 7.898  ? ? ? C10 XR3 3  N N N 
XR3 C9  C4  C 0  1 Y N N -10.877 -3.179 8.173  ? ? ? C9  XR3 4  N N N 
XR3 C8  C5  C 0  1 Y N N -9.599  -3.659 7.939  ? ? ? C8  XR3 5  N N N 
XR3 C5  C6  C 0  1 N N N -8.801  -2.427 10.838 ? ? ? C5  XR3 6  N N N 
XR3 C4  C7  C 0  1 N N S -8.122  -2.219 12.163 ? ? ? C4  XR3 7  N N N 
XR3 B2  B1  B -1 1 N N N -6.102  -3.176 13.142 ? ? ? B2  XR3 8  N N N 
XR3 C16 C8  C 0  1 Y N N -9.394  -4.934 7.432  ? ? ? C16 XR3 9  N N N 
XR3 C19 C9  C 0  1 Y N N -7.056  -1.157 12.216 ? ? ? C19 XR3 10 N N N 
XR3 C20 C10 C 0  1 Y N N -7.137  0.131  11.694 ? ? ? C20 XR3 11 N N N 
XR3 C21 C11 C 0  1 Y N N -6.041  0.972  11.788 ? ? ? C21 XR3 12 N N N 
XR3 C22 C12 C 0  1 Y N N -4.876  0.527  12.388 ? ? ? C22 XR3 13 N N N 
XR3 C23 C13 C 0  1 Y N N -4.801  -0.759 12.900 ? ? ? C23 XR3 14 N N N 
XR3 C24 C14 C 0  1 Y N N -5.893  -1.633 12.816 ? ? ? C24 XR3 15 N N N 
XR3 N12 N1  N 1  1 N N N -12.896 -6.075 7.028  ? ? ? N12 XR3 16 N N N 
XR3 N6  N2  N 0  1 N N N -7.834  -2.858 9.827  ? ? ? N6  XR3 17 N N N 
XR3 O1  O1  O 0  1 N N N -5.077  -3.985 12.431 ? ? ? O1  XR3 18 N N N 
XR3 O13 O2  O -1 1 N N N -12.709 -7.036 6.303  ? ? ? O13 XR3 19 N N N 
XR3 O14 O3  O 0  1 N N N -13.979 -5.800 7.511  ? ? ? O14 XR3 20 N N N 
XR3 O17 O4  O 0  1 N N N -7.103  -3.108 7.517  ? ? ? O17 XR3 21 N N N 
XR3 O18 O5  O 0  1 N N N -8.638  -1.273 8.147  ? ? ? O18 XR3 22 N N N 
XR3 O3  O6  O 0  1 N N N -7.511  -3.404 12.655 ? ? ? O3  XR3 23 N N N 
XR3 S7  S1  S 0  1 N N N -8.211  -2.630 8.286  ? ? ? S7  XR3 24 N N N 
XR3 H15 H1  H 0  1 N N N -10.343 -6.738 6.766  ? ? ? H15 XR3 25 N N N 
XR3 H10 H2  H 0  1 N N N -12.972 -3.633 8.080  ? ? ? H10 XR3 26 N N N 
XR3 H9  H3  H 0  1 N N N -11.021 -2.184 8.567  ? ? ? H9  XR3 27 N N N 
XR3 H5A H4  H 0  1 N N N -9.578  -3.198 10.947 ? ? ? H5A XR3 28 N N N 
XR3 H5B H5  H 0  1 N N N -9.264  -1.482 10.516 ? ? ? H5B XR3 29 N N N 
XR3 H4  H6  H 0  1 N N N -8.903  -1.921 12.878 ? ? ? H4  XR3 30 N N N 
XR3 H16 H7  H 0  1 N N N -8.391  -5.294 7.254  ? ? ? H16 XR3 31 N N N 
XR3 H20 H8  H 0  1 N N N -8.046  0.471  11.220 ? ? ? H20 XR3 32 N N N 
XR3 H21 H9  H 0  1 N N N -6.095  1.976  11.393 ? ? ? H21 XR3 33 N N N 
XR3 H22 H10 H 0  1 N N N -4.022  1.184  12.458 ? ? ? H22 XR3 34 N N N 
XR3 H23 H11 H 0  1 N N N -3.888  -1.092 13.370 ? ? ? H23 XR3 35 N N N 
XR3 H6  H12 H 0  1 N N N -6.981  -2.366 10.001 ? ? ? H6  XR3 36 N N N 
XR3 H1  H13 H 0  1 N N N -5.499  -4.523 11.772 ? ? ? H1  XR3 37 N N N 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XR3 O1  B2  SING N N 1  
XR3 B2  O3  SING N N 2  
XR3 O3  C4  SING N N 3  
XR3 C4  C5  SING N N 4  
XR3 C5  N6  SING N N 5  
XR3 N6  S7  SING N N 6  
XR3 S7  C8  SING N N 7  
XR3 C8  C9  DOUB Y N 8  
XR3 C9  C10 SING Y N 9  
XR3 C10 C11 DOUB Y N 10 
XR3 C11 N12 SING N N 11 
XR3 N12 O13 SING N N 12 
XR3 N12 O14 DOUB N N 13 
XR3 C11 C15 SING Y N 14 
XR3 C15 C16 DOUB Y N 15 
XR3 S7  O17 DOUB N N 16 
XR3 S7  O18 DOUB N N 17 
XR3 C4  C19 SING N N 18 
XR3 C19 C20 SING Y N 19 
XR3 C20 C21 DOUB Y N 20 
XR3 C21 C22 SING Y N 21 
XR3 C22 C23 DOUB Y N 22 
XR3 C23 C24 SING Y N 23 
XR3 C24 B2  SING N N 24 
XR3 C16 C8  SING Y N 25 
XR3 C24 C19 DOUB Y N 26 
XR3 C15 H15 SING N N 27 
XR3 C10 H10 SING N N 28 
XR3 C9  H9  SING N N 29 
XR3 C5  H5A SING N N 30 
XR3 C5  H5B SING N N 31 
XR3 C4  H4  SING N N 32 
XR3 C16 H16 SING N N 33 
XR3 C20 H20 SING N N 34 
XR3 C21 H21 SING N N 35 
XR3 C22 H22 SING N N 36 
XR3 C23 H23 SING N N 37 
XR3 N6  H6  SING N N 38 
XR3 O1  H1  SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XR3 InChI            InChI                1.06  "InChI=1S/C14H14BN2O6S/c18-15-13-4-2-1-3-12(13)14(23-15)9-16-24(21,22)11-7-5-10(6-8-11)17(19)20/h1-8,14-16,18H,9H2/q-1/t14-,15-/m1/s1" 
XR3 InChIKey         InChI                1.06  GBEOHIBOUUYNIJ-HUUCEWRRSA-N                                                                                                            
XR3 SMILES_CANONICAL CACTVS               3.385 "O[B-]1O[C@H](CN[S](=O)(=O)c2ccc(cc2)[N+]([O-])=O)c3ccccc13"                                                                           
XR3 SMILES           CACTVS               3.385 "O[B-]1O[CH](CN[S](=O)(=O)c2ccc(cc2)[N+]([O-])=O)c3ccccc13"                                                                            
XR3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-]1(c2ccccc2[C@H](O1)CNS(=O)(=O)c3ccc(cc3)[N+](=O)[O-])O"                                                                           
XR3 SMILES           "OpenEye OEToolkits" 2.0.7 "[B-]1(c2ccccc2C(O1)CNS(=O)(=O)c3ccc(cc3)[N+](=O)[O-])O"                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           XR3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[[(3~{S})-1-oxidanyl-3~{H}-2,1-benzoxaborol-3-yl]methyl]-4-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]benzenesulfonamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XR3 "Create component" 2023-11-08 PDBE 
XR3 "Modify charge"    2023-11-12 PDBE 
XR3 "Modify PCM"       2024-09-27 PDBE 
XR3 "Initial release"  2024-11-20 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XR3 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
