data_XB3
# 
_chem_comp.id                                    XB3 
_chem_comp.name                                  
;[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-5-[(1R,3S,3aS,13R)-3-([1,1'-biphenyl]-4-yl)-1-hydroxy-10,11-dimethyl-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)
;
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C42 H47 N9 O16 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-09 
_chem_comp.pdbx_modified_date                    2024-06-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        995.821 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XB3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F2Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XB3 C4  C1  C 0 1 Y N N N N N -6.941  59.930 83.153 6.135   0.525  1.218  C4  XB3 1   
XB3 C14 C2  C 0 1 Y N N N N N -5.441  53.664 85.113 7.280   -0.418 -2.563 C14 XB3 2   
XB3 C5  C3  C 0 1 Y N N N N N -7.592  59.359 82.091 6.860   1.452  1.958  C5  XB3 3   
XB3 C6  C4  C 0 1 Y N N N N N -7.535  59.924 80.837 7.614   1.019  3.045  C6  XB3 4   
XB3 C11 C5  C 0 1 N N S N N N -7.329  56.134 82.870 7.934   2.662  -0.482 C11 XB3 5   
XB3 C7  C6  C 0 1 Y N N N N N -6.816  61.068 80.630 7.638   -0.319 3.383  C7  XB3 6   
XB3 C8  C7  C 0 1 N N N N N N -6.737  61.690 79.270 8.457   -0.780 4.562  C8  XB3 7   
XB3 C9  C8  C 0 1 N N R N N N -8.111  57.357 81.105 8.246   3.333  1.853  C9  XB3 8   
XB3 C10 C9  C 0 1 N N N N N N -6.869  56.602 81.504 9.017   2.853  0.603  C10 XB3 9   
XB3 C12 C10 C 0 1 Y N N N N N -6.267  55.366 83.618 7.883   1.223  -0.926 C12 XB3 10  
XB3 C13 C11 C 0 1 Y N N N N N -6.497  54.338 84.519 7.330   0.899  -2.152 C13 XB3 11  
XB3 N1  N1  N 0 1 N N N N N N -8.324  58.209 82.233 6.860   2.819  1.648  N1  XB3 12  
XB3 N2  N2  N 0 1 N N N N N N -9.818  56.562 84.905 5.364   4.909  -0.854 N2  XB3 13  
XB3 C3  C12 C 0 1 Y N N N N N -6.207  61.089 82.961 6.167   -0.819 1.561  C3  XB3 14  
XB3 N3  N3  N 0 1 N N N N N N -8.014  57.797 85.745 4.574   2.717  -1.098 N3  XB3 15  
XB3 C1  C13 C 0 1 N N N N N N -5.351  62.927 81.516 6.945   -2.697 3.022  C1  XB3 16  
XB3 C15 C14 C 0 1 Y N N N N N -4.124  53.982 84.812 7.785   -1.422 -1.740 C15 XB3 17  
XB3 C16 C15 C 0 1 Y N N N N N -2.954  53.274 85.396 7.730   -2.839 -2.174 C16 XB3 18  
XB3 C17 C16 C 0 1 Y N N N N N -1.682  53.824 85.303 7.179   -3.171 -3.411 C17 XB3 19  
XB3 C18 C17 C 0 1 Y N N N N N -0.573  53.168 85.805 7.130   -4.491 -3.810 C18 XB3 20  
XB3 C19 C18 C 0 1 Y N N N N N -0.708  51.939 86.392 7.628   -5.484 -2.986 C19 XB3 21  
XB3 C2  C19 C 0 1 Y N N N N N -6.141  61.671 81.728 6.914   -1.238 2.646  C2  XB3 22  
XB3 C20 C20 C 0 1 Y N N N N N -1.951  51.367 86.480 8.175   -5.161 -1.758 C20 XB3 23  
XB3 C21 C21 C 0 1 Y N N N N N -3.066  52.021 85.981 8.234   -3.844 -1.351 C21 XB3 24  
XB3 C22 C22 C 0 1 Y N N N N N -3.919  54.975 83.872 8.342   -1.090 -0.506 C22 XB3 25  
XB3 C23 C23 C 0 1 Y N N N N N -4.964  55.647 83.272 8.391   0.230  -0.107 C23 XB3 26  
XB3 C24 C24 C 0 1 N N S N N N -8.137  57.353 83.393 6.615   3.058  0.213  C24 XB3 27  
XB3 C25 C25 C 0 1 N N N N N N -9.502  56.791 83.652 6.359   4.518  -0.038 C25 XB3 28  
XB3 C26 C26 C 0 1 N N N N N N -9.037  57.018 85.901 4.543   4.014  -1.425 C26 XB3 29  
XB3 C27 C27 C 0 1 N N N N N N -7.700  58.164 84.565 5.484   2.221  -0.299 C27 XB3 30  
XB3 C28 C28 C 0 1 N N N N N N -6.470  60.029 85.582 4.471   0.002  -0.564 C28 XB3 31  
XB3 C29 C29 C 0 1 N N S N N N -7.359  61.123 86.108 3.087   0.059  0.086  C29 XB3 32  
XB3 C30 C30 C 0 1 N N S N N N -6.615  62.137 86.969 2.149   -0.917 -0.627 C30 XB3 33  
XB3 C31 C31 C 0 1 N N R N N N -7.438  62.776 88.075 0.765   -0.860 0.023  C31 XB3 34  
XB3 C32 C32 C 0 1 N N N N N N -6.581  63.618 88.985 -0.174  -1.836 -0.689 C32 XB3 35  
XB3 C33 C33 C 0 1 N N N N N N -6.296  70.049 88.937 -7.871  -2.337 1.322  C33 XB3 36  
XB3 C34 C34 C 0 1 N N R N N N -7.013  71.352 89.099 -8.630  -1.116 1.844  C34 XB3 37  
XB3 C35 C35 C 0 1 N N R N N N -6.197  73.396 88.525 -9.989  0.548  0.979  C35 XB3 38  
XB3 C36 C36 C 0 1 Y N N N N N -3.803  73.899 87.916 -9.988  0.866  -1.524 C36 XB3 39  
XB3 C37 C37 C 0 1 Y N N N N N -3.593  75.828 88.739 -11.346 2.540  -1.758 C37 XB3 40  
XB3 C38 C38 C 0 1 Y N N N N N -3.208  77.090 89.187 -12.175 3.598  -2.170 C38 XB3 41  
XB3 C39 C39 C 0 1 Y N N N N N -5.331  77.308 90.042 -12.722 3.982  0.040  C39 XB3 42  
XB3 C40 C40 C 0 1 Y N N N N N -4.874  75.441 89.013 -11.259 2.261  -0.384 C40 XB3 43  
XB3 C41 C41 C 0 1 N N R N N N -6.569  72.694 87.242 -10.959 -0.607 1.337  C41 XB3 44  
XB3 C42 C42 C 0 1 N N S N N N -7.699  71.882 87.841 -10.070 -1.515 2.220  C42 XB3 45  
XB3 N4  N4  N 0 1 N N N N N N -7.049  59.333 84.412 5.370   0.936  0.118  N4  XB3 46  
XB3 N5  N5  N 0 1 Y N N N N N -5.000  74.197 88.485 -10.396 1.201  -0.268 N5  XB3 47  
XB3 N6  N6  N 0 1 Y N N N N N -2.928  74.852 88.038 -10.546 1.653  -2.398 N6  XB3 48  
XB3 N7  N7  N 0 1 N N N N N N -2.008  77.602 88.984 -12.301 3.919  -3.510 N7  XB3 49  
XB3 N8  N8  N 0 1 Y N N N N N -4.117  77.820 89.851 -12.836 4.281  -1.242 N8  XB3 50  
XB3 N9  N9  N 0 1 Y N N N N N -5.805  76.139 89.662 -11.958 3.001  0.470  N9  XB3 51  
XB3 O1  O1  O 0 1 N N N N N N -9.189  56.486 81.005 8.246   4.760  1.923  O1  XB3 52  
XB3 O10 O2  O 0 1 N N N N N N -6.320  67.082 89.871 -4.036  -2.253 0.223  O10 XB3 53  
XB3 O11 O3  O 0 1 N N N N N N -5.487  67.858 87.716 -5.915  -3.632 -0.744 O11 XB3 54  
XB3 O12 O4  O 0 1 N N N N N N -7.832  66.888 87.953 -5.171  -4.179 1.605  O12 XB3 55  
XB3 O13 O5  O 0 1 N N N N N N -7.256  69.020 88.947 -6.510  -1.981 1.070  O13 XB3 56  
XB3 O14 O6  O 0 1 N N N N N N -6.016  72.340 89.413 -8.719  -0.119 0.812  O14 XB3 57  
XB3 O15 O7  O 0 1 N N N N N N -7.072  73.583 86.282 -12.081 -0.119 2.075  O15 XB3 58  
XB3 O16 O8  O 0 1 N N N N N N -8.731  72.803 88.162 -10.314 -1.260 3.605  O16 XB3 59  
XB3 O2  O9  O 0 1 N N N N N N -10.271 56.525 82.749 7.056   5.351  0.500  O2  XB3 60  
XB3 O3  O10 O 0 1 N N N N N N -9.318  56.694 87.016 3.746   4.393  -2.263 O3  XB3 61  
XB3 O4  O11 O 0 1 N N N N N N -7.820  61.785 85.002 3.193   -0.303 1.464  O4  XB3 62  
XB3 O5  O12 O 0 1 N N N N N N -5.609  61.467 87.622 2.043   -0.556 -2.005 O5  XB3 63  
XB3 O6  O13 O 0 1 N N N N N N -8.463  63.564 87.494 0.871   -1.222 1.402  O6  XB3 64  
XB3 O7  O14 O 0 1 N N N N N N -7.157  64.883 89.357 -1.494  -1.700 -0.160 O7  XB3 65  
XB3 O8  O15 O 0 1 N N N N N N -7.486  65.771 91.596 -3.054  -2.207 -2.215 O8  XB3 66  
XB3 O9  O16 O 0 1 N N N N N N -5.126  65.251 90.829 -2.413  -4.014 -0.573 O9  XB3 67  
XB3 P1  P1  P 0 1 N N N N N N -6.489  65.685 90.524 -2.742  -2.575 -0.679 P1  XB3 68  
XB3 P2  P2  P 0 1 N N N N N N -6.706  67.645 88.483 -5.419  -3.025 0.511  P2  XB3 69  
XB3 H1  H1  H 0 1 N N N N N N -5.647  52.877 85.823 6.847   -0.669 -3.520 H1  XB3 70  
XB3 H2  H2  H 0 1 N N N N N N -8.060  59.462 80.014 8.181   1.732  3.624  H2  XB3 71  
XB3 H3  H3  H 0 1 N N N N N N -8.101  55.382 82.650 8.127   3.315  -1.333 H3  XB3 72  
XB3 H4  H4  H 0 1 N N N N N N -7.561  62.408 79.146 7.845   -0.749 5.463  H4  XB3 73  
XB3 H5  H5  H 0 1 N N N N N N -5.775  62.213 79.161 8.799   -1.800 4.390  H5  XB3 74  
XB3 H6  H6  H 0 1 N N N N N N -6.816  60.906 78.503 9.318   -0.123 4.685  H6  XB3 75  
XB3 H7  H7  H 0 1 N N N N N N -7.941  57.930 80.181 8.682   2.906  2.757  H7  XB3 76  
XB3 H8  H8  H 0 1 N N N N N N -6.658  55.762 80.826 9.519   1.908  0.807  H8  XB3 77  
XB3 H9  H9  H 0 1 N N N N N N -5.986  57.256 81.564 9.738   3.607  0.290  H9  XB3 78  
XB3 H10 H10 H 0 1 N N N N N N -7.512  54.059 84.761 6.936   1.678  -2.788 H10 XB3 79  
XB3 H11 H11 H 0 1 N N N N N N -10.646 56.044 85.121 5.238   5.854  -1.032 H11 XB3 80  
XB3 H12 H12 H 0 1 N N N N N N -5.683  61.536 83.793 5.605   -1.538 0.983  H12 XB3 81  
XB3 H14 H14 H 0 1 N N N N N N -5.999  63.801 81.679 6.143   -2.907 3.730  H14 XB3 82  
XB3 H15 H15 H 0 1 N N N N N N -4.511  62.956 82.226 6.809   -3.305 2.128  H15 XB3 83  
XB3 H16 H16 H 0 1 N N N N N N -4.962  62.946 80.487 7.905   -2.934 3.479  H16 XB3 84  
XB3 H17 H17 H 0 1 N N N N N N -1.556  54.786 84.828 6.790   -2.396 -4.055 H17 XB3 85  
XB3 H18 H18 H 0 1 N N N N N N 0.402   53.627 85.734 6.704   -4.749 -4.768 H18 XB3 86  
XB3 H19 H19 H 0 1 N N N N N N 0.157   51.424 86.783 7.587   -6.516 -3.303 H19 XB3 87  
XB3 H20 H20 H 0 1 N N N N N N -2.062  50.397 86.943 8.562   -5.941 -1.118 H20 XB3 88  
XB3 H21 H21 H 0 1 N N N N N N -4.035  51.549 86.048 8.666   -3.592 -0.393 H21 XB3 89  
XB3 H22 H22 H 0 1 N N N N N N -2.907  55.233 83.598 8.734   -1.864 0.136  H22 XB3 90  
XB3 H23 H23 H 0 1 N N N N N N -4.758  56.399 82.525 8.822   0.489  0.849  H23 XB3 91  
XB3 H25 H25 H 0 1 N N N N N N -6.306  59.293 86.383 4.869   -1.010 -0.484 H25 XB3 92  
XB3 H26 H26 H 0 1 N N N N N N -5.507  60.470 85.287 4.390   0.278  -1.616 H26 XB3 93  
XB3 H27 H27 H 0 1 N N N N N N -8.182  60.683 86.691 2.689   1.070  0.005  H27 XB3 94  
XB3 H28 H28 H 0 1 N N N N N N -6.210  62.928 86.321 2.547   -1.929 -0.546 H28 XB3 95  
XB3 H29 H29 H 0 1 N N N N N N -7.889  61.971 88.674 0.367   0.151  -0.057 H29 XB3 96  
XB3 H30 H30 H 0 1 N N N N N N -6.392  63.044 89.904 -0.186  -1.615 -1.757 H30 XB3 97  
XB3 H31 H31 H 0 1 N N N N N N -5.628  63.814 88.473 0.176   -2.857 -0.533 H31 XB3 98  
XB3 H32 H32 H 0 1 N N N N N N -5.588  69.907 89.767 -7.906  -3.132 2.067  H32 XB3 99  
XB3 H33 H33 H 0 1 N N N N N N -5.749  70.040 87.983 -8.332  -2.685 0.398  H33 XB3 100 
XB3 H34 H34 H 0 1 N N N N N N -7.750  71.273 89.911 -8.117  -0.705 2.714  H34 XB3 101 
XB3 H35 H35 H 0 1 N N N N N N -7.046  74.019 88.843 -9.938  1.273  1.792  H35 XB3 102 
XB3 H36 H36 H 0 1 N N N N N N -3.599  72.965 87.413 -9.299  0.068  -1.760 H36 XB3 103 
XB3 H37 H37 H 0 1 N N N N N N -6.022  77.937 90.583 -13.278 4.563  0.761  H37 XB3 104 
XB3 H38 H38 H 0 1 N N N N N N -5.755  72.054 86.871 -11.284 -1.134 0.440  H38 XB3 105 
XB3 H39 H39 H 0 1 N N N N N N -8.023  71.068 87.175 -10.248 -2.565 1.988  H39 XB3 106 
XB3 H40 H40 H 0 1 N N N N N N -1.963  78.517 89.385 -11.813 3.412  -4.178 H40 XB3 107 
XB3 H41 H41 H 0 1 N N N N N N -1.319  77.017 89.412 -12.877 4.651  -3.781 H41 XB3 108 
XB3 H42 H42 H 0 1 N N N N N N -9.688  56.505 81.813 9.127   5.151  1.997  H42 XB3 109 
XB3 H43 H43 H 0 1 N N N N N N -7.626  66.586 87.076 -4.845  -3.853 2.455  H43 XB3 110 
XB3 H44 H44 H 0 1 N N N N N N -6.357  74.088 85.912 -12.671 -0.814 2.399  H44 XB3 111 
XB3 H45 H45 H 0 1 N N N N N N -9.465  72.336 88.543 -11.222 -1.439 3.884  H45 XB3 112 
XB3 H46 H46 H 0 1 N N N N N N -8.392  62.494 85.272 3.541   -1.193 1.612  H46 XB3 113 
XB3 H47 H47 H 0 1 N N N N N N -5.126  62.075 88.169 1.694   0.334  -2.153 H47 XB3 114 
XB3 H48 H48 H 0 1 N N N N N N -8.981  63.966 88.181 1.219   -2.112 1.549  H48 XB3 115 
XB3 H49 H49 H 0 1 N N N N N N -7.089  65.513 92.420 -3.278  -1.277 -2.359 H49 XB3 116 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XB3 C8  C7  SING N N 1   
XB3 C7  C6  DOUB Y N 2   
XB3 C7  C2  SING Y N 3   
XB3 C6  C5  SING Y N 4   
XB3 O1  C9  SING N N 5   
XB3 C9  C10 SING N N 6   
XB3 C9  N1  SING N N 7   
XB3 C10 C11 SING N N 8   
XB3 C1  C2  SING N N 9   
XB3 C2  C3  DOUB Y N 10  
XB3 C5  N1  SING N N 11  
XB3 C5  C4  DOUB Y N 12  
XB3 N1  C24 SING N N 13  
XB3 O2  C25 DOUB N N 14  
XB3 C11 C24 SING N N 15  
XB3 C11 C12 SING N N 16  
XB3 C3  C4  SING Y N 17  
XB3 C4  N4  SING N N 18  
XB3 C23 C12 DOUB Y N 19  
XB3 C23 C22 SING Y N 20  
XB3 C24 C25 SING N N 21  
XB3 C24 C27 SING N N 22  
XB3 C12 C13 SING Y N 23  
XB3 C25 N2  SING N N 24  
XB3 C22 C15 DOUB Y N 25  
XB3 N4  C27 SING N N 26  
XB3 N4  C28 SING N N 27  
XB3 C13 C14 DOUB Y N 28  
XB3 C27 N3  DOUB N N 29  
XB3 C15 C14 SING Y N 30  
XB3 C15 C16 SING N N 31  
XB3 N2  C26 SING N N 32  
XB3 O4  C29 SING N N 33  
XB3 C17 C16 DOUB Y N 34  
XB3 C17 C18 SING Y N 35  
XB3 C16 C21 SING Y N 36  
XB3 C28 C29 SING N N 37  
XB3 N3  C26 SING N N 38  
XB3 C18 C19 DOUB Y N 39  
XB3 C26 O3  DOUB N N 40  
XB3 C21 C20 DOUB Y N 41  
XB3 C29 C30 SING N N 42  
XB3 O15 C41 SING N N 43  
XB3 C19 C20 SING Y N 44  
XB3 C30 O5  SING N N 45  
XB3 C30 C31 SING N N 46  
XB3 C41 C42 SING N N 47  
XB3 C41 C35 SING N N 48  
XB3 O6  C31 SING N N 49  
XB3 O11 P2  DOUB N N 50  
XB3 C42 O16 SING N N 51  
XB3 C42 C34 SING N N 52  
XB3 C36 N6  DOUB Y N 53  
XB3 C36 N5  SING Y N 54  
XB3 O12 P2  SING N N 55  
XB3 N6  C37 SING Y N 56  
XB3 C31 C32 SING N N 57  
XB3 P2  O13 SING N N 58  
XB3 P2  O10 SING N N 59  
XB3 N5  C35 SING N N 60  
XB3 N5  C40 SING Y N 61  
XB3 C35 O14 SING N N 62  
XB3 C37 C40 DOUB Y N 63  
XB3 C37 C38 SING Y N 64  
XB3 C33 O13 SING N N 65  
XB3 C33 C34 SING N N 66  
XB3 N7  C38 SING N N 67  
XB3 C32 O7  SING N N 68  
XB3 C40 N9  SING Y N 69  
XB3 C34 O14 SING N N 70  
XB3 C38 N8  DOUB Y N 71  
XB3 O7  P1  SING N N 72  
XB3 N9  C39 DOUB Y N 73  
XB3 N8  C39 SING Y N 74  
XB3 O10 P1  SING N N 75  
XB3 P1  O9  DOUB N N 76  
XB3 P1  O8  SING N N 77  
XB3 C14 H1  SING N N 78  
XB3 C6  H2  SING N N 79  
XB3 C11 H3  SING N N 80  
XB3 C8  H4  SING N N 81  
XB3 C8  H5  SING N N 82  
XB3 C8  H6  SING N N 83  
XB3 C9  H7  SING N N 84  
XB3 C10 H8  SING N N 85  
XB3 C10 H9  SING N N 86  
XB3 C13 H10 SING N N 87  
XB3 N2  H11 SING N N 88  
XB3 C3  H12 SING N N 89  
XB3 C1  H14 SING N N 90  
XB3 C1  H15 SING N N 91  
XB3 C1  H16 SING N N 92  
XB3 C17 H17 SING N N 93  
XB3 C18 H18 SING N N 94  
XB3 C19 H19 SING N N 95  
XB3 C20 H20 SING N N 96  
XB3 C21 H21 SING N N 97  
XB3 C22 H22 SING N N 98  
XB3 C23 H23 SING N N 99  
XB3 C28 H25 SING N N 100 
XB3 C28 H26 SING N N 101 
XB3 C29 H27 SING N N 102 
XB3 C30 H28 SING N N 103 
XB3 C31 H29 SING N N 104 
XB3 C32 H30 SING N N 105 
XB3 C32 H31 SING N N 106 
XB3 C33 H32 SING N N 107 
XB3 C33 H33 SING N N 108 
XB3 C34 H34 SING N N 109 
XB3 C35 H35 SING N N 110 
XB3 C36 H36 SING N N 111 
XB3 C39 H37 SING N N 112 
XB3 C41 H38 SING N N 113 
XB3 C42 H39 SING N N 114 
XB3 N7  H40 SING N N 115 
XB3 N7  H41 SING N N 116 
XB3 O1  H42 SING N N 117 
XB3 O12 H43 SING N N 118 
XB3 O15 H44 SING N N 119 
XB3 O16 H45 SING N N 120 
XB3 O4  H46 SING N N 121 
XB3 O5  H47 SING N N 122 
XB3 O6  H48 SING N N 123 
XB3 O8  H49 SING N N 124 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XB3 SMILES           ACDLabs              12.01 "Cc1cc2c(cc1C)N1C(O)CC(c3ccc(cc3)c3ccccc3)C11C(=O)NC(=O)N=C1N2CC(O)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O"                                                                                                                                                                                                                                                                           
XB3 InChI            InChI                1.06  "InChI=1S/C42H47N9O16P2/c1-20-12-26-27(13-21(20)2)51-31(54)14-25(24-10-8-23(9-11-24)22-6-4-3-5-7-22)42(51)39(47-41(59)48-40(42)58)49(26)15-28(52)33(55)29(53)16-64-68(60,61)67-69(62,63)65-17-30-34(56)35(57)38(66-30)50-19-46-32-36(43)44-18-45-37(32)50/h3-13,18-19,25,28-31,33-35,38,52-57H,14-17H2,1-2H3,(H,60,61)(H,62,63)(H2,43,44,45)(H,48,58,59)/t25-,28-,29+,30+,31+,33-,34+,35+,38+,42-/m0/s1" 
XB3 InChIKey         InChI                1.06  GILKOAUHLVTXHU-DRZNBKSLSA-N                                                                                                                                                                                                                                                                                                                                                                              
XB3 SMILES_CANONICAL CACTVS               3.385 "Cc1cc2N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C6=NC(=O)NC(=O)[C@]67[C@@H](C[C@@H](O)N7c2cc1C)c8ccc(cc8)c9ccccc9"                                                                                                                                                                                                                             
XB3 SMILES           CACTVS               3.385 "Cc1cc2N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C6=NC(=O)NC(=O)[C]67[CH](C[CH](O)N7c2cc1C)c8ccc(cc8)c9ccccc9"                                                                                                                                                                                                                                          
XB3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cc1C)N3[C@@H](C[C@H]([C@]34C(=O)NC(=O)N=C4N2C[C@@H]([C@@H]([C@@H](COP(=O)(O)OP(=O)(O)OC[C@@H]5[C@H]([C@H]([C@@H](O5)n6cnc7c6ncnc7N)O)O)O)O)O)c8ccc(cc8)c9ccccc9)O"                                                                                                                                                                                                                              
XB3 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cc1C)N3C(CC(C34C(=O)NC(=O)N=C4N2CC(C(C(COP(=O)(O)OP(=O)(O)OCC5C(C(C(O5)n6cnc7c6ncnc7N)O)O)O)O)O)c8ccc(cc8)c9ccccc9)O"                                                                                                                                                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           XB3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        
;[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-5-[(1R,3S,3aS,13R)-3-([1,1'-biphenyl]-4-yl)-1-hydroxy-10,11-dimethyl-4,6-dioxo-2,3,5,6-tetrahydro-1H-benzo[g]pyrrolo[2,1-e]pteridin-8(4H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XB3 "Create component" 2022-11-09 RCSB 
XB3 "Modify formula"   2023-05-11 RCSB 
XB3 "Initial release"  2024-06-12 RCSB 
# 
