data_VI3
# 
_chem_comp.id                                    VI3 
_chem_comp.name                                  "(2~{R})-2-azanyl-3-[bis(oxidanylidene)-$l^{5}-sulfanyl]propanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C3 H6 N O4 S" 
_chem_comp.mon_nstd_parent_comp_id               CYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     2023-03-07 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        152.149 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     VI3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ONM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VI3 O2  O  O 0  1 N N N N N N 4.474 -1.791 20.177 2.319  1.260  0.008  O  VI3 1  
VI3 O1  O1 O 0  1 N N N N N N 3.200 0.222  19.249 2.777  -1.309 -0.165 O1 VI3 2  
VI3 N   N  N 0  1 N N N Y Y N 6.999 1.870  21.333 -0.605 1.584  -0.467 N  VI3 3  
VI3 CA  CA C 0  1 N N R Y N N 6.107 0.899  20.646 -0.826 0.132  -0.431 CA VI3 4  
VI3 C   C  C 0  1 N N N Y N Y 5.965 1.257  19.172 -2.254 -0.149 -0.038 C  VI3 5  
VI3 O   O2 O 0  1 N N N Y N Y 6.106 0.356  18.336 -2.902 0.698  0.530  O2 VI3 6  
VI3 CB  CB C 0  1 N N N N N N 4.735 0.807  21.289 0.119  -0.502 0.591  CB VI3 7  
VI3 SG  SG S -1 1 N N N N N N 3.722 -0.492 20.528 1.833  -0.165 0.119  SG VI3 8  
VI3 OXT O3 O 0  1 N Y N Y N Y 5.683 2.515  18.842 -2.805 -1.340 -0.318 O3 VI3 9  
VI3 H2  H3 H 0  1 N Y N Y Y N 7.082 1.622  22.298 -0.779 1.999  0.436  H3 VI3 10 
VI3 H   H4 H 0  1 N N N Y Y N 7.903 1.852  20.905 0.326  1.800  -0.790 H4 VI3 11 
VI3 HA  H6 H 0  1 N N N Y N N 6.573 -0.096 20.705 -0.631 -0.289 -1.417 H6 VI3 12 
VI3 H7  H7 H 0  1 N N N N N N 4.222 1.773  21.173 -0.076 -0.081 1.577  H7 VI3 13 
VI3 H8  H8 H 0  1 N N N N N N 4.857 0.583  22.359 -0.045 -1.580 0.618  H8 VI3 14 
VI3 HXT H9 H 0  1 N Y N Y N Y 5.614 2.587  17.897 -3.723 -1.474 -0.046 H9 VI3 15 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VI3 O   C   DOUB N N 1  
VI3 C   CA  SING N N 2  
VI3 O1  SG  DOUB N N 3  
VI3 O2  SG  DOUB N N 4  
VI3 SG  CB  SING N N 5  
VI3 CA  CB  SING N N 6  
VI3 CA  N   SING N N 7  
VI3 C   OXT SING N N 8  
VI3 N   H2  SING N N 9  
VI3 N   H   SING N N 10 
VI3 CA  HA  SING N N 11 
VI3 CB  H7  SING N N 12 
VI3 CB  H8  SING N N 13 
VI3 OXT HXT SING N N 14 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VI3 InChI            InChI                1.06  "InChI=1S/C3H6NO4S/c4-2(3(5)6)1-9(7)8/h2H,1,4H2,(H,5,6)/q-1/t2-/m0/s1" 
VI3 InChIKey         InChI                1.06  RRLRIWQWKHHDRA-REOHCLBHSA-N                                            
VI3 SMILES_CANONICAL CACTVS               3.385 "N[C@@H](C[S-](=O)=O)C(O)=O"                                           
VI3 SMILES           CACTVS               3.385 "N[CH](C[S-](=O)=O)C(O)=O"                                             
VI3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H](C(=O)O)N)[S-](=O)=O"                                         
VI3 SMILES           "OpenEye OEToolkits" 2.0.7 "C(C(C(=O)O)N)[S-](=O)=O"                                              
# 
_pdbx_chem_comp_identifier.comp_id           VI3 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-azanyl-3-sulfinato-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VI3 "Create component"         2023-03-07 PDBE 
VI3 "Modify linking type"      2023-03-07 PDBE 
VI3 "Modify leaving atom flag" 2023-03-08 PDBE 
VI3 "Initial release"          2023-03-15 RCSB 
VI3 "Modify formula"           2023-05-12 PDBE 
VI3 "Modify backbone"          2023-11-03 PDBE 
VI3 "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VI3 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               Oxidation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
