data_SN3
#

_chem_comp.id                                   SN3
_chem_comp.name                                 
;(R)-3-((2S,3R)-1-((2S,3AR,5S,6S,7AS)-2-(2-(1-CARBAMIMIDOYL-2,5-DIHYDRO-1H-PYRROL-3-YL)ETHYLCARBAMOYL)-5,6-DIHYDROXYOCTA
HYDRO-1H-INDOL-1-YL)-3-CHLORO-4-METHYL-1-OXOPENTAN-2-YLAMINO)-2-METHOXY-3-OXOPROPYL HYDROGEN SULFATE
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H43 Cl N6 O10 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        CHLORODYSINOSIN
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-03-29
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       667.172
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SN3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2GDE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SN3  C1    C1    C   0  1  N  N  S  20.655  -15.222  18.446    0.301   2.977  -2.658  C1    SN3   1  
SN3  C2    C2    C   0  1  N  N  N  21.176  -14.095  19.376   -0.705   3.402  -1.591  C2    SN3   2  
SN3  C3    C3    C   0  1  N  N  R  20.219  -13.557  20.437   -0.038   4.299  -0.547  C3    SN3   3  
SN3  C4    C4    C   0  1  N  N  S  19.184  -14.565  20.969    1.197   3.604   0.055  C4    SN3   4  
SN3  C5    C5    C   0  1  N  N  N  18.611  -15.545  19.914    2.143   3.068  -0.995  C5    SN3   5  
SN3  C6    C6    C   0  1  N  N  S  19.753  -16.255  19.181    1.413   2.163  -1.988  C6    SN3   6  
SN3  O7    O7    O   0  1  N  N  N  20.482  -17.049  20.139    2.331   1.696  -2.978  O7    SN3   7  
SN3  N8    N8    N   0  1  N  N  N  18.155  -13.668  21.558    0.671   2.559   0.938  N8    SN3   8  
SN3  C9    C9    C   0  1  N  N  S  18.190  -12.379  20.864   -0.674   2.971   1.378  C9    SN3   9  
SN3  C10   C10   C   0  1  N  N  N  19.318  -12.473  19.817   -0.985   4.320   0.692  C10   SN3  10  
SN3  C11   C11   C   0  1  N  N  N  16.878  -12.130  20.153   -1.689   1.938   0.962  C11   SN3  11  
SN3  N12   N12   N   0  1  N  N  N  16.365  -10.872  20.154   -2.998   2.140   1.212  N12   SN3  12  
SN3  C13   C13   C   0  1  N  N  N  15.098  -10.602  19.449   -3.973   1.089   0.908  C13   SN3  13  
SN3  C14   C14   C   0  1  N  N  N  14.281   -9.611  20.270   -5.357   1.520   1.398  C14   SN3  14  
SN3  C15   C15   C   0  1  N  N  N  13.558  -10.383  21.348   -6.359   0.439   1.084  C15   SN3  15  
SN3  C16   C16   C   0  1  N  N  N  12.961   -9.731  22.550   -7.078   0.285  -0.230  C16   SN3  16  
SN3  N17   N17   N   0  1  N  N  N  12.209  -10.755  23.271   -7.956  -0.888  -0.108  N17   SN3  17  
SN3  C18   C18   C   0  1  N  N  N  12.607  -12.034  22.670   -7.744  -1.398   1.254  C18   SN3  18  
SN3  C19   C19   C   0  1  N  N  N  13.388  -11.683  21.422   -6.726  -0.502   1.909  C19   SN3  19  
SN3  C20   C20   C   0  1  N  N  N  11.347  -10.539  24.238   -8.799  -1.400  -1.066  C20   SN3  20  
SN3  N21   N21   N   0  1  N  N  N  10.664  -11.592  24.821   -8.878  -0.830  -2.236  N21   SN3  21  
SN3  N22   N22   N   0  1  N  N  N  11.086   -9.263  24.653   -9.559  -2.512  -0.790  N22   SN3  22  
SN3  O23   O23   O   0  1  N  N  N  16.305  -13.056  19.582   -1.328   0.925   0.401  O23   SN3  23  
SN3  C24   C24   C   0  1  N  N  N  17.332  -13.971  22.580    1.305   1.422   1.287  C24   SN3  24  
SN3  O25   O25   O   0  1  N  N  N  16.560  -13.112  22.946    0.834   0.703   2.142  O25   SN3  25  
SN3  C26   C26   C   0  1  N  N  S  17.366  -15.327  23.271    2.599   1.044   0.613  C26   SN3  26  
SN3  C27   C27   C   0  1  N  N  R  17.745  -15.115  24.750    3.745   1.857   1.218  C27   SN3  27  
SN3  C28   C28   C   0  1  N  N  N  17.741  -16.408  25.571    5.024   1.612   0.414  C28   SN3  28  
SN3  C29   C29   C   0  1  N  N  N  18.658  -17.501  24.992    4.845   2.154  -1.006  C29   SN3  29  
SN3  C30   C30   C   0  1  N  N  N  18.158  -16.049  26.995    6.195   2.329   1.089  C30   SN3  30  
SN3  CL31  CL31  CL  0  0  N  N  N  19.334  -14.269  24.819    3.330   3.611   1.169  CL31  SN3  31  
SN3  N32   N32   N   0  1  N  N  N  16.043  -15.948  23.241    2.854  -0.384   0.812  N32   SN3  32  
SN3  C33   C33   C   0  1  N  N  N  15.769  -17.033  22.477    3.624  -1.060  -0.064  C33   SN3  33  
SN3  C34   C34   C   0  1  N  N  R  14.389  -17.615  22.522    3.887  -2.530   0.142  C34   SN3  34  
SN3  O35   O35   O   0  1  N  N  N  13.451  -16.603  22.925    4.815  -2.990  -0.843  O35   SN3  35  
SN3  C36   C36   C   0  1  N  N  N  12.928  -15.839  21.824    5.637  -4.073  -0.405  C36   SN3  36  
SN3  C37   C37   C   0  1  N  N  N  14.411  -18.827  23.471    2.575  -3.306   0.008  C37   SN3  37  
SN3  O38   O38   O   0  1  N  N  N  14.486  -18.467  24.862    2.803  -4.682   0.317  O38   SN3  38  
SN3  S39   S39   S   0  1  N  N  N  15.053  -19.563  25.796    1.559  -5.553   0.215  S39   SN3  39  
SN3  O40   O40   O   0  1  N  N  N  15.221  -19.010  27.092    1.277  -5.766  -1.265  O40   SN3  40  
SN3  O41   O41   O   0  1  N  N  N  13.975  -20.620  26.032    1.914  -6.824   0.742  O41   SN3  41  
SN3  O42   O42   O   0  1  N  N  N  16.113  -20.172  25.054    0.482  -4.776   0.721  O42   SN3  42  
SN3  O43   O43   O   0  1  N  N  N  16.601  -17.548  21.750    4.105  -0.485  -1.017  O43   SN3  43  
SN3  O46   O46   O   0  1  N  N  N  19.994  -14.632  17.310   -0.354   2.173  -3.642  O46   SN3  44  
SN3  H1    H1    H   0  1  N  N  N  21.521  -15.804  18.097    0.729   3.861  -3.131  H1    SN3  45  
SN3  H21   H21   H   0  1  N  N  N  22.049  -14.499  19.909   -1.521   3.947  -2.065  H21   SN3  46  
SN3  H22   H22   H   0  1  N  N  N  21.446  -13.247  18.730   -1.104   2.515  -1.100  H22   SN3  47  
SN3  H3    H3    H   0  1  N  N  N  20.894  -13.232  21.242    0.189   5.292  -0.936  H3    SN3  48  
SN3  H4    H4    H   0  1  N  N  N  19.626  -15.275  21.684    1.734   4.325   0.671  H4    SN3  49  
SN3  H51   H51   H   0  1  N  N  N  17.982  -16.294  20.418    2.588   3.904  -1.535  H51   SN3  50  
SN3  H52   H52   H   0  1  N  N  N  18.007  -14.983  19.187    2.933   2.498  -0.507  H52   SN3  51  
SN3  H6    H6    H   0  1  N  N  N  19.359  -16.925  18.403    0.979   1.314  -1.460  H6    SN3  52  
SN3  HO7   HO7   H   0  1  N  N  N  19.890  -17.662  20.559    1.930   1.128  -3.650  HO7   SN3  53  
SN3  H9    H9    H   0  1  N  N  N  18.359  -11.559  21.577   -0.689   3.094   2.461  H9    SN3  54  
SN3  H101  H101  H   0  0  N  N  N  19.846  -11.517  19.686   -0.742   5.154   1.350  H101  SN3  55  
SN3  H102  H102  H   0  0  N  N  N  18.942  -12.761  18.824   -2.029   4.364   0.380  H102  SN3  56  
SN3  HN12  HN12  H   0  0  N  N  N  16.843  -10.134  20.630   -3.295   2.980   1.594  HN12  SN3  57  
SN3  H131  H131  H   0  0  N  N  N  15.309  -10.176  18.457   -4.004   0.924  -0.169  H131  SN3  58  
SN3  H132  H132  H   0  0  N  N  N  14.533  -11.538  19.329   -3.680   0.166   1.408  H132  SN3  59  
SN3  H141  H141  H   0  0  N  N  N  14.946   -8.862  20.726   -5.325   1.685   2.475  H141  SN3  60  
SN3  H142  H142  H   0  0  N  N  N  13.554   -9.097  19.624   -5.649   2.443   0.897  H142  SN3  61  
SN3  H161  H161  H   0  0  N  N  N  13.754   -9.319  23.192   -7.674   1.174  -0.433  H161  SN3  62  
SN3  H162  H162  H   0  0  N  N  N  12.292   -8.912  22.245   -6.357   0.126  -1.031  H162  SN3  63  
SN3  H181  H181  H   0  0  N  N  N  13.230  -12.613  23.367   -8.680  -1.370   1.811  H181  SN3  64  
SN3  H182  H182  H   0  0  N  N  N  11.722  -12.636  22.417   -7.363  -2.418   1.213  H182  SN3  65  
SN3  H192  H192  H   0  0  N  N  N  13.752  -12.397  20.698   -6.355  -0.620   2.917  H192  SN3  66  
SN3  HN21  HN21  H   0  0  N  N  N  10.020  -11.280  25.520   -9.473  -1.191  -2.911  HN21  SN3  67  
SN3  H221  H221  H   0  0  N  N  N  10.408   -9.099  25.370   -9.500  -2.935   0.081  H221  SN3  68  
SN3  H222  H222  H   0  0  N  N  N  11.573   -8.493  24.240  -10.154  -2.873  -1.465  H222  SN3  69  
SN3  H26   H26   H   0  1  N  N  N  18.093  -15.971  22.754    2.528   1.255  -0.454  H26   SN3  70  
SN3  H27   H27   H   0  1  N  N  N  16.972  -14.490  25.220    3.902   1.550   2.252  H27   SN3  71  
SN3  H28   H28   H   0  1  N  N  N  16.729  -16.837  25.547    5.227   0.542   0.372  H28   SN3  72  
SN3  H291  H291  H   0  0  N  N  N  18.607  -18.397  25.627    4.010   1.643  -1.486  H291  SN3  73  
SN3  H292  H292  H   0  0  N  N  N  18.328  -17.755  23.974    4.641   3.224  -0.964  H292  SN3  74  
SN3  H293  H293  H   0  0  N  N  N  19.694  -17.132  24.961    5.756   1.979  -1.578  H293  SN3  75  
SN3  H301  H301  H   0  0  N  N  N  18.166  -16.957  27.615    6.379   1.883   2.067  H301  SN3  76  
SN3  H302  H302  H   0  0  N  N  N  19.165  -15.606  26.981    7.088   2.228   0.471  H302  SN3  77  
SN3  H303  H303  H   0  0  N  N  N  17.444  -15.325  27.415    5.955   3.385   1.210  H303  SN3  78  
SN3  HN32  HN32  H   0  0  N  N  N  15.314  -15.558  23.804    2.470  -0.844   1.575  HN32  SN3  79  
SN3  H34   H34   H   0  1  N  N  N  14.065  -17.964  21.530    4.303  -2.689   1.136  H34   SN3  80  
SN3  H361  H361  H   0  0  N  N  N  12.220  -15.087  22.202    6.218  -3.761   0.463  H361  SN3  81  
SN3  H362  H362  H   0  0  N  N  N  13.755  -15.335  21.302    5.008  -4.921  -0.135  H362  SN3  82  
SN3  H363  H363  H   0  0  N  N  N  12.409  -16.511  21.125    6.314  -4.364  -1.208  H363  SN3  83  
SN3  H371  H371  H   0  0  N  N  N  13.485  -19.401  23.315    1.838  -2.895   0.698  H371  SN3  84  
SN3  H372  H372  H   0  0  N  N  N  15.294  -19.437  23.227    2.204  -3.219  -1.013  H372  SN3  85  
SN3  HO40  HO40  H   0  0  N  N  N  14.635  -19.445  27.701    0.498  -6.311  -1.443  HO40  SN3  86  
SN3  HO46  HO46  H   0  0  N  N  N  19.673  -15.319  16.738    0.228   1.868  -4.352  HO46  SN3  87  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SN3  C1   C2    SING  N  N   1  
SN3  C1   C6    SING  N  N   2  
SN3  C1   O46   SING  N  N   3  
SN3  C1   H1    SING  N  N   4  
SN3  C2   C3    SING  N  N   5  
SN3  C2   H21   SING  N  N   6  
SN3  C2   H22   SING  N  N   7  
SN3  C3   C4    SING  N  N   8  
SN3  C3   C10   SING  N  N   9  
SN3  C3   H3    SING  N  N  10  
SN3  C4   C5    SING  N  N  11  
SN3  C4   N8    SING  N  N  12  
SN3  C4   H4    SING  N  N  13  
SN3  C5   C6    SING  N  N  14  
SN3  C5   H51   SING  N  N  15  
SN3  C5   H52   SING  N  N  16  
SN3  C6   O7    SING  N  N  17  
SN3  C6   H6    SING  N  N  18  
SN3  O7   HO7   SING  N  N  19  
SN3  N8   C9    SING  N  N  20  
SN3  N8   C24   SING  N  N  21  
SN3  C9   C10   SING  N  N  22  
SN3  C9   C11   SING  N  N  23  
SN3  C9   H9    SING  N  N  24  
SN3  C10  H101  SING  N  N  25  
SN3  C10  H102  SING  N  N  26  
SN3  C11  N12   SING  N  N  27  
SN3  C11  O23   DOUB  N  N  28  
SN3  N12  C13   SING  N  N  29  
SN3  N12  HN12  SING  N  N  30  
SN3  C13  C14   SING  N  N  31  
SN3  C13  H131  SING  N  N  32  
SN3  C13  H132  SING  N  N  33  
SN3  C14  C15   SING  N  N  34  
SN3  C14  H141  SING  N  N  35  
SN3  C14  H142  SING  N  N  36  
SN3  C15  C16   SING  N  N  37  
SN3  C15  C19   DOUB  N  N  38  
SN3  C16  N17   SING  N  N  39  
SN3  C16  H161  SING  N  N  40  
SN3  C16  H162  SING  N  N  41  
SN3  N17  C18   SING  N  N  42  
SN3  N17  C20   SING  N  N  43  
SN3  C18  C19   SING  N  N  44  
SN3  C18  H181  SING  N  N  45  
SN3  C18  H182  SING  N  N  46  
SN3  C19  H192  SING  N  N  47  
SN3  C20  N21   DOUB  N  N  48  
SN3  C20  N22   SING  N  N  49  
SN3  N21  HN21  SING  N  N  50  
SN3  N22  H221  SING  N  N  51  
SN3  N22  H222  SING  N  N  52  
SN3  C24  O25   DOUB  N  N  53  
SN3  C24  C26   SING  N  N  54  
SN3  C26  C27   SING  N  N  55  
SN3  C26  N32   SING  N  N  56  
SN3  C26  H26   SING  N  N  57  
SN3  C27  C28   SING  N  N  58  
SN3  C27  CL31  SING  N  N  59  
SN3  C27  H27   SING  N  N  60  
SN3  C28  C29   SING  N  N  61  
SN3  C28  C30   SING  N  N  62  
SN3  C28  H28   SING  N  N  63  
SN3  C29  H291  SING  N  N  64  
SN3  C29  H292  SING  N  N  65  
SN3  C29  H293  SING  N  N  66  
SN3  C30  H301  SING  N  N  67  
SN3  C30  H302  SING  N  N  68  
SN3  C30  H303  SING  N  N  69  
SN3  N32  C33   SING  N  N  70  
SN3  N32  HN32  SING  N  N  71  
SN3  C33  C34   SING  N  N  72  
SN3  C33  O43   DOUB  N  N  73  
SN3  C34  O35   SING  N  N  74  
SN3  C34  C37   SING  N  N  75  
SN3  C34  H34   SING  N  N  76  
SN3  O35  C36   SING  N  N  77  
SN3  C36  H361  SING  N  N  78  
SN3  C36  H362  SING  N  N  79  
SN3  C36  H363  SING  N  N  80  
SN3  C37  O38   SING  N  N  81  
SN3  C37  H371  SING  N  N  82  
SN3  C37  H372  SING  N  N  83  
SN3  O38  S39   SING  N  N  84  
SN3  S39  O40   SING  N  N  85  
SN3  S39  O41   DOUB  N  N  86  
SN3  S39  O42   DOUB  N  N  87  
SN3  O40  HO40  SING  N  N  88  
SN3  O46  HO46  SING  N  N  89  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SN3  SMILES            ACDLabs               12.01  "O=S(=O)(O)OCC(OC)C(=O)NC(C(=O)N2C(C(=O)NCCC1=CCN(C(=[N@H])N)C1)CC3CC(O)C(O)CC23)C(Cl)C(C)C"  
SN3  SMILES_CANONICAL  CACTVS                3.370  "CO[C@H](CO[S](O)(=O)=O)C(=O)N[C@H]([C@H](Cl)C(C)C)C(=O)N1[C@H]2C[C@H](O)[C@@H](O)C[C@H]2C[C@H]1C(=O)NCCC3=CCN(C3)C(N)=N"  
SN3  SMILES            CACTVS                3.370  "CO[CH](CO[S](O)(=O)=O)C(=O)N[CH]([CH](Cl)C(C)C)C(=O)N1[CH]2C[CH](O)[CH](O)C[CH]2C[CH]1C(=O)NCCC3=CCN(C3)C(N)=N"  
SN3  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "[H]/N=C(\N)/N1CC=C(C1)CCNC(=O)[C@@H]2C[C@@H]3C[C@@H]([C@H](C[C@@H]3N2C(=O)[C@@H]([C@@H](C(C)C)Cl)NC(=O)[C@@H](COS(=O)(=O)O)OC)O)O"  
SN3  SMILES            "OpenEye OEToolkits"  1.7.0  "CC(C)C(C(C(=O)N1C2CC(C(CC2CC1C(=O)NCCC3=CCN(C3)C(=N)N)O)O)NC(=O)C(COS(=O)(=O)O)OC)Cl"  
SN3  InChI             InChI                 1.03   "InChI=1S/C26H43ClN6O10S/c1-13(2)21(27)22(31-24(37)20(42-3)12-43-44(39,40)41)25(38)33-16-10-19(35)18(34)9-15(16)8-17(33)23(36)30-6-4-14-5-7-32(11-14)26(28)29/h5,13,15-22,34-35H,4,6-12H2,1-3H3,(H3,28,29)(H,30,36)(H,31,37)(H,39,40,41)/t15-,16+,17+,18+,19+,20-,21-,22-/m1/s1"  
SN3  InChIKey          InChI                 1.03   BVKDJAALSHFQTE-WNZJUFNWSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SN3  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R)-3-({(2S,3R)-1-[(2S,3aR,5S,6S,7aS)-2-{[2-(1-carbamimidoyl-2,5-dihydro-1H-pyrrol-3-yl)ethyl]carbamoyl}-5,6-dihydroxyoctahydro-1H-indol-1-yl]-3-chloro-4-methyl-1-oxopentan-2-yl}amino)-2-methoxy-3-oxopropyl hydrogen sulfate (non-preferred name)"  
SN3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "[(2R)-3-[[(2S,3R)-1-[(2S,3aR,5S,6S,7aS)-2-[2-(1-carbamimidoyl-2,5-dihydropyrrol-3-yl)ethylcarbamoyl]-5,6-dihydroxy-2,3,3a,4,5,6,7,7a-octahydroindol-1-yl]-3-chloro-4-methyl-1-oxo-pentan-2-yl]amino]-2-methoxy-3-oxo-propyl] hydrogen sulfate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SN3  "Create component"    2006-03-29  RCSB  
SN3  "Other modification"  2010-10-11  RCSB  
SN3  "Modify descriptor"   2011-06-04  RCSB  
SN3  "Modify synonyms"     2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SN3
_pdbx_chem_comp_synonyms.name        CHLORODYSINOSIN
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
