data_RV3
# 
_chem_comp.id                                    RV3 
_chem_comp.name                                  "3-{[(1H-benzimidazole-5-carbonyl)amino]methyl}-1H-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H14 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-23 
_chem_comp.pdbx_modified_date                    2022-07-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        334.329 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RV3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5SSQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RV3 C18  C1  C 0 1 Y N N -47.674 -28.997 5.031  -2.323 0.356  0.925  C18  RV3 1  
RV3 C17  C2  C 0 1 Y N N -48.362 -29.042 3.822  -2.421 -0.010 -0.424 C17  RV3 2  
RV3 C15  C3  C 0 1 N N N -47.660 -29.090 2.493  -1.196 -0.281 -1.204 C15  RV3 3  
RV3 C13  C4  C 0 1 N N N -45.574 -29.988 1.382  1.228  -0.446 -1.390 C13  RV3 4  
RV3 C12  C5  C 0 1 Y N N -44.483 -28.978 1.130  2.436  -0.260 -0.509 C12  RV3 5  
RV3 C11  C6  C 0 1 Y N N -44.664 -27.757 0.478  3.153  0.945  -0.318 C11  RV3 6  
RV3 C10  C7  C 0 1 Y N N -45.784 -27.119 -0.069 3.007  2.242  -0.827 C10  RV3 7  
RV3 C20  C8  C 0 1 Y N N -49.780 -29.201 6.196  -4.702 0.510  1.064  C20  RV3 8  
RV3 C19  C9  C 0 1 Y N N -48.382 -29.053 6.226  -3.447 0.609  1.656  C19  RV3 9  
RV3 C02  C10 C 0 1 N N N -42.449 -30.223 2.165  2.594  -2.619 0.348  C02  RV3 10 
RV3 C04  C11 C 0 1 Y N N -43.137 -29.077 1.445  3.029  -1.219 0.251  C04  RV3 11 
RV3 C06  C12 C 0 1 Y N N -43.419 -27.170 0.444  4.200  0.663  0.582  C06  RV3 12 
RV3 C07  C13 C 0 1 Y N N -43.269 -25.916 -0.146 5.076  1.679  0.952  C07  RV3 13 
RV3 C08  C14 C 0 1 Y N N -44.372 -25.283 -0.691 4.912  2.946  0.438  C08  RV3 14 
RV3 C09  C15 C 0 1 Y N N -45.627 -25.874 -0.653 3.879  3.222  -0.448 C09  RV3 15 
RV3 C22  C16 C 0 1 Y N N -51.883 -29.433 6.551  -6.828 0.456  0.474  C22  RV3 16 
RV3 C24  C17 C 0 1 Y N N -50.432 -29.284 4.988  -4.818 0.139  -0.288 C24  RV3 17 
RV3 C25  C18 C 0 1 Y N N -49.723 -29.218 3.796  -3.668 -0.118 -1.032 C25  RV3 18 
RV3 N05  N1  N 0 1 Y N N -42.532 -27.982 1.032  4.106  -0.667 0.918  N05  RV3 19 
RV3 N14  N2  N 0 1 N N N -46.369 -29.736 2.559  0.013  -0.176 -0.617 N14  RV3 20 
RV3 N21  N3  N 0 1 Y N N -50.714 -29.300 7.153  -5.990 0.697  1.518  N21  RV3 21 
RV3 N23  N4  N 0 1 Y N N -51.726 -29.429 5.251  -6.145 0.128  -0.583 N23  RV3 22 
RV3 O01  O1  O 0 1 N N N -43.098 -30.948 2.968  3.265  -3.480 1.138  O01  RV3 23 
RV3 O03  O2  O 0 1 N N N -41.224 -30.405 1.957  1.629  -3.001 -0.285 O03  RV3 24 
RV3 O16  O3  O 0 1 N N N -48.146 -28.785 1.463  -1.278 -0.598 -2.374 O16  RV3 25 
RV3 H181 H1  H 0 0 N N N -46.597 -28.919 5.041  -1.352 0.434  1.391  H181 RV3 26 
RV3 H131 H2  H 0 0 N N N -46.245 -29.993 0.510  1.283  0.245  -2.232 H131 RV3 27 
RV3 H132 H3  H 0 0 N N N -45.106 -30.978 1.490  1.203  -1.470 -1.762 H132 RV3 28 
RV3 H101 H4  H 0 0 N N N -46.755 -27.591 -0.036 2.207  2.466  -1.517 H101 RV3 29 
RV3 H191 H5  H 0 0 N N N -47.862 -28.983 7.170  -3.363 0.886  2.696  H191 RV3 30 
RV3 H071 H6  H 0 0 N N N -42.299 -25.442 -0.177 5.882  1.475  1.642  H071 RV3 31 
RV3 H081 H7  H 0 0 N N N -44.254 -24.314 -1.153 5.592  3.733  0.728  H081 RV3 32 
RV3 H091 H8  H 0 0 N N N -46.479 -25.364 -1.078 3.764  4.221  -0.842 H091 RV3 33 
RV3 H221 H9  H 0 0 N N N -52.831 -29.531 7.058  -7.905 0.521  0.518  H221 RV3 34 
RV3 H251 H10 H 0 0 N N N -50.240 -29.305 2.852  -3.743 -0.400 -2.072 H251 RV3 35 
RV3 H051 H11 H 0 0 N N N -41.557 -27.787 1.141  4.698  -1.140 1.523  H051 RV3 36 
RV3 H141 H12 H 0 0 N N N -46.015 -30.018 3.451  0.079  0.077  0.317  H141 RV3 37 
RV3 H211 H13 H 0 0 N N N -50.555 -29.277 8.140  -6.250 0.952  2.417  H211 RV3 38 
RV3 H2   H15 H 0 1 N N N -42.519 -31.599 3.346  2.942  -4.391 1.170  H2   RV3 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RV3 C08 C09  DOUB Y N 1  
RV3 C08 C07  SING Y N 2  
RV3 C09 C10  SING Y N 3  
RV3 C07 C06  DOUB Y N 4  
RV3 C10 C11  DOUB Y N 5  
RV3 C06 C11  SING Y N 6  
RV3 C06 N05  SING Y N 7  
RV3 C11 C12  SING Y N 8  
RV3 N05 C04  SING Y N 9  
RV3 C12 C13  SING N N 10 
RV3 C12 C04  DOUB Y N 11 
RV3 C13 N14  SING N N 12 
RV3 C04 C02  SING N N 13 
RV3 O16 C15  DOUB N N 14 
RV3 O03 C02  DOUB N N 15 
RV3 C02 O01  SING N N 16 
RV3 C15 N14  SING N N 17 
RV3 C15 C17  SING N N 18 
RV3 C25 C17  DOUB Y N 19 
RV3 C25 C24  SING Y N 20 
RV3 C17 C18  SING Y N 21 
RV3 C24 N23  SING Y N 22 
RV3 C24 C20  DOUB Y N 23 
RV3 C18 C19  DOUB Y N 24 
RV3 N23 C22  DOUB Y N 25 
RV3 C20 C19  SING Y N 26 
RV3 C20 N21  SING Y N 27 
RV3 C22 N21  SING Y N 28 
RV3 C18 H181 SING N N 29 
RV3 C13 H131 SING N N 30 
RV3 C13 H132 SING N N 31 
RV3 C10 H101 SING N N 32 
RV3 C19 H191 SING N N 33 
RV3 C07 H071 SING N N 34 
RV3 C08 H081 SING N N 35 
RV3 C09 H091 SING N N 36 
RV3 C22 H221 SING N N 37 
RV3 C25 H251 SING N N 38 
RV3 N05 H051 SING N N 39 
RV3 N14 H141 SING N N 40 
RV3 N21 H211 SING N N 41 
RV3 O01 H2   SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RV3 SMILES           ACDLabs              12.01 "O=C(O)c1[NH]c2ccccc2c1CNC(=O)c1ccc2[NH]cnc2c1"                                                                                                 
RV3 InChI            InChI                1.06  "InChI=1S/C18H14N4O3/c23-17(10-5-6-14-15(7-10)21-9-20-14)19-8-12-11-3-1-2-4-13(11)22-16(12)18(24)25/h1-7,9,22H,8H2,(H,19,23)(H,20,21)(H,24,25)" 
RV3 InChIKey         InChI                1.06  ZBKHDPZXZUDEDP-UHFFFAOYSA-N                                                                                                                     
RV3 SMILES_CANONICAL CACTVS               3.385 "OC(=O)c1[nH]c2ccccc2c1CNC(=O)c3ccc4[nH]cnc4c3"                                                                                                 
RV3 SMILES           CACTVS               3.385 "OC(=O)c1[nH]c2ccccc2c1CNC(=O)c3ccc4[nH]cnc4c3"                                                                                                 
RV3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c([nH]2)C(=O)O)CNC(=O)c3ccc4c(c3)nc[nH]4"                                                                                         
RV3 SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c([nH]2)C(=O)O)CNC(=O)c3ccc4c(c3)nc[nH]4"                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RV3 "SYSTEMATIC NAME" ACDLabs              12.01 "3-{[(1H-benzimidazole-5-carbonyl)amino]methyl}-1H-indole-2-carboxylic acid"      
RV3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[(1~{H}-benzimidazol-5-ylcarbonylamino)methyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RV3 "Create component" 2022-06-23 RCSB 
RV3 "Initial release"  2022-07-06 RCSB 
# 
