data_R33
# 
_chem_comp.id                                    R33 
_chem_comp.name                                  "N-[(3S)-6-carbamimidamido-2-oxohexan-3-yl]glycinamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H19 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        229.279 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R33 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5WDL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R33 C02 C1  C 0 1 N N N N N N 6.670  10.189 -15.424 -2.154 2.026  -0.063 C02 R33 1  
R33 C03 C2  C 0 1 N N N N N N 5.514  11.089 -15.833 -2.145 3.260  0.802  C03 R33 2  
R33 C04 C3  C 0 1 N N S N N N 6.874  8.854  -16.137 -1.231 0.877  0.254  C04 R33 3  
R33 C05 C4  C 0 1 N N N N N N 8.208  8.897  -16.876 0.196  1.238  -0.165 C05 R33 4  
R33 C06 C5  C 0 1 N N N N N N 8.655  7.524  -17.365 1.152  0.126  0.269  C06 R33 5  
R33 C07 C6  C 0 1 N N N N N N 9.795  7.626  -18.374 2.578  0.487  -0.151 C07 R33 6  
R33 C09 C7  C 0 1 N N N N N N 10.671 6.090  -20.163 4.838  -0.474 -0.006 C09 R33 7  
R33 C13 C8  C 0 1 N N N N N N 4.802  7.640  -16.958 -2.624 -1.110 0.043  C13 R33 8  
R33 C14 C9  C 0 1 N N N N N N 3.700  7.512  -18.010 -3.073 -2.337 -0.707 C14 R33 9  
R33 N08 N1  N 0 1 N N N N N N 10.164 6.297  -18.820 3.494  -0.578 0.265  N08 R33 10 
R33 N10 N2  N 0 1 N N N N N N 11.035 4.751  -20.594 5.697  -1.474 0.384  N10 R33 11 
R33 N11 N3  N 0 1 N N N N N N 10.792 7.059  -20.946 5.297  0.572  -0.633 N11 R33 12 
R33 N12 N4  N 0 1 N N N N N N 5.805  8.680  -17.103 -1.667 -0.315 -0.475 N12 R33 13 
R33 N15 N5  N 0 1 N N N N N N 2.783  6.444  -17.659 -4.117 -3.028 0.063  N15 R33 14 
R33 O01 O1  O 0 1 N N N N N N 7.398  10.539 -14.559 -2.903 1.955  -1.007 O01 R33 15 
R33 O16 O2  O 0 1 N N N N N N 4.836  6.897  -16.034 -3.124 -0.838 1.114  O16 R33 16 
R33 H1  H1  H 0 1 N N N N N N 5.524  12.002 -15.219 -2.863 3.140  1.614  H1  R33 17 
R33 H2  H2  H 0 1 N N N N N N 5.618  11.360 -16.894 -1.148 3.406  1.218  H2  R33 18 
R33 H3  H3  H 0 1 N N N N N N 4.564  10.556 -15.682 -2.419 4.127  0.201  H3  R33 19 
R33 H4  H4  H 0 1 N N N N N N 6.879  8.035  -15.403 -1.255 0.677  1.326  H4  R33 20 
R33 H5  H5  H 0 1 N N N N N N 8.975  9.295  -16.195 0.238  1.352  -1.249 H5  R33 21 
R33 H6  H6  H 0 1 N N N N N N 8.108  9.564  -17.745 0.488  2.175  0.310  H6  R33 22 
R33 H7  H7  H 0 1 N N N N N N 7.801  7.020  -17.842 1.110  0.013  1.352  H7  R33 23 
R33 H8  H8  H 0 1 N N N N N N 8.995  6.932  -16.502 0.859  -0.811 -0.206 H8  R33 24 
R33 H9  H9  H 0 1 N N N N N N 10.663 8.108  -17.900 2.621  0.600  -1.234 H9  R33 25 
R33 H10 H10 H 0 1 N N N N N N 9.469  8.225  -19.237 2.871  1.423  0.324  H10 R33 26 
R33 H11 H11 H 0 1 N N N N N N 4.156  7.291  -18.986 -3.473 -2.044 -1.678 H11 R33 27 
R33 H12 H12 H 0 1 N N N N N N 3.145  8.460  -18.070 -2.225 -3.006 -0.850 H12 R33 28 
R33 H13 H13 H 0 1 N N N N N N 10.069 5.519  -18.199 3.152  -1.357 0.731  H13 R33 29 
R33 H14 H14 H 0 1 N N N N N N 10.935 3.979  -19.966 5.355  -2.253 0.850  H14 R33 30 
R33 H15 H15 H 0 1 N N N N N N 11.385 4.601  -21.519 6.645  -1.400 0.193  H15 R33 31 
R33 H16 H16 H 0 1 N N N N N N 10.505 7.919  -20.524 4.691  1.278  -0.908 H16 R33 32 
R33 H17 H17 H 0 1 N N N N N N 5.758  9.294  -17.891 -1.268 -0.534 -1.332 H17 R33 33 
R33 H18 H18 H 0 1 N N N N N N 2.070  6.374  -18.356 -4.887 -2.408 0.265  H18 R33 34 
R33 H19 H19 H 0 1 N N N N N N 3.283  5.580  -17.606 -4.435 -3.855 -0.420 H19 R33 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R33 N11 C09 DOUB N N 1  
R33 N10 C09 SING N N 2  
R33 C09 N08 SING N N 3  
R33 N08 C07 SING N N 4  
R33 C07 C06 SING N N 5  
R33 C14 N15 SING N N 6  
R33 C14 C13 SING N N 7  
R33 C06 C05 SING N N 8  
R33 N12 C13 SING N N 9  
R33 N12 C04 SING N N 10 
R33 C13 O16 DOUB N N 11 
R33 C05 C04 SING N N 12 
R33 C04 C02 SING N N 13 
R33 C03 C02 SING N N 14 
R33 C02 O01 DOUB N N 15 
R33 C03 H1  SING N N 16 
R33 C03 H2  SING N N 17 
R33 C03 H3  SING N N 18 
R33 C04 H4  SING N N 19 
R33 C05 H5  SING N N 20 
R33 C05 H6  SING N N 21 
R33 C06 H7  SING N N 22 
R33 C06 H8  SING N N 23 
R33 C07 H9  SING N N 24 
R33 C07 H10 SING N N 25 
R33 C14 H11 SING N N 26 
R33 C14 H12 SING N N 27 
R33 N08 H13 SING N N 28 
R33 N10 H14 SING N N 29 
R33 N10 H15 SING N N 30 
R33 N11 H16 SING N N 31 
R33 N12 H17 SING N N 32 
R33 N15 H18 SING N N 33 
R33 N15 H19 SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R33 SMILES           ACDLabs              12.01 "C(=O)(C)C(CCCN/C(N)=N)NC(=O)CN"                                                                               
R33 InChI            InChI                1.03  "InChI=1S/C9H19N5O2/c1-6(15)7(14-8(16)5-10)3-2-4-13-9(11)12/h7H,2-5,10H2,1H3,(H,14,16)(H4,11,12,13)/t7-/m0/s1" 
R33 InChIKey         InChI                1.03  CAKKYWQZWULXCC-ZETCQYMHSA-N                                                                                    
R33 SMILES_CANONICAL CACTVS               3.385 "CC(=O)[C@H](CCCNC(N)=N)NC(=O)CN"                                                                              
R33 SMILES           CACTVS               3.385 "CC(=O)[CH](CCCNC(N)=N)NC(=O)CN"                                                                               
R33 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[H]/N=C(\N)/NCCC[C@@H](C(=O)C)NC(=O)CN"                                                                       
R33 SMILES           "OpenEye OEToolkits" 2.0.6 "CC(=O)C(CCCNC(=N)N)NC(=O)CN"                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
R33 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(3S)-6-carbamimidamido-2-oxohexan-3-yl]glycinamide"                          
R33 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-azanyl-~{N}-[(3~{S})-6-carbamimidamido-2-oxidanylidene-hexan-3-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R33 "Create component" 2017-07-08 RCSB 
R33 "Initial release"  2018-07-11 RCSB 
R33 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            R33 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C03 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
