data_PQ3
# 
_chem_comp.id                                    PQ3 
_chem_comp.name                                  "N2,N9-bis(1-methylquinolin-3-yl)-1,10-phenanthroline-2,9-dicarboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H26 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Phen-DC3 
_chem_comp.pdbx_formal_charge                    2 
_chem_comp.pdbx_initial_date                     2013-11-13 
_chem_comp.pdbx_modified_date                    2024-05-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        550.609 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PQ3 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2MGN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PQ3 C4     C4     C 0 1 Y N N N N N 34.088 45.281 30.091 -3.745 -3.811 0.147  C4     PQ3 1  
PQ3 C5     C5     C 0 1 Y N N N N N 34.792 45.141 31.286 -2.953 -2.656 0.144  C5     PQ3 2  
PQ3 C3     C3     C 0 1 Y N N N N N 32.780 45.733 30.124 -3.150 -5.042 0.105  C3     PQ3 3  
PQ3 C2     C2     C 0 1 Y N N N N N 32.221 46.091 31.348 -1.747 -5.103 0.060  C2     PQ3 4  
PQ3 C17    C17    C 0 1 Y N N N N N 32.979 45.990 32.534 -1.008 -3.896 0.059  C17    PQ3 5  
PQ3 "C17'" "C17'" C 0 0 Y N N N N N 32.395 46.420 33.753 0.460  -3.973 0.011  "C17'" PQ3 6  
PQ3 "C2'"  "C2'"  C 0 1 Y N N N N N 31.068 46.900 33.738 1.068  -5.250 -0.032 "C2'"  PQ3 7  
PQ3 C1     C1     C 0 1 Y N N N N N 30.907 46.546 31.364 -1.077 -6.346 0.015  C1     PQ3 8  
PQ3 C9     C9     C 0 1 N N N N N N 40.841 42.108 30.959 -6.492 2.484  -1.471 C9     PQ3 9  
PQ3 C13    C13    C 0 1 Y N N N N N 41.710 43.261 35.860 -3.721 5.702  1.177  C13    PQ3 10 
PQ3 "C5'"  "C5'"  C 0 1 Y N N N N N 32.480 46.752 36.092 2.524  -2.941 -0.035 "C5'"  PQ3 11 
PQ3 C6     C6     C 0 1 N N N N N N 36.188 44.566 31.245 -3.606 -1.327 0.190  C6     PQ3 12 
PQ3 "C1'"  "C1'"  C 0 1 Y N N N N N 30.331 46.950 32.557 0.271  -6.416 -0.028 "C1'"  PQ3 13 
PQ3 "C3'"  "C3'"  C 0 1 Y N N N N N 30.455 47.308 34.921 2.470  -5.334 -0.078 "C3'"  PQ3 14 
PQ3 "C4'"  "C4'"  C 0 1 Y N N N N N 31.170 47.233 36.107 3.190  -4.171 -0.079 "C4'"  PQ3 15 
PQ3 "C6'"  "C6'"  C 0 1 N N N N N N 33.225 46.627 37.402 3.313  -1.687 -0.036 "C6'"  PQ3 16 
PQ3 C12    C12    C 0 1 Y N N N N N 42.349 42.421 34.953 -4.897 5.791  0.435  C12    PQ3 17 
PQ3 "C7'"  "C7'"  C 0 1 Y N N N N N 35.415 45.880 38.403 3.423  0.688  -0.092 "C7'"  PQ3 18 
PQ3 "C16'" "C16'" C 0 0 Y N N N N N 36.519 45.068 38.164 4.679  0.772  0.476  "C16'" PQ3 19 
PQ3 "C15'" "C15'" C 0 0 Y N N N N N 37.451 44.860 39.181 5.384  1.983  0.345  "C15'" PQ3 20 
PQ3 "C10'" "C10'" C 0 0 Y N N N N N 37.238 45.414 40.454 4.784  3.057  -0.358 "C10'" PQ3 21 
PQ3 "C8'"  "C8'"  C 0 1 Y N N N N N 35.263 46.433 39.680 2.895  1.792  -0.773 "C8'"  PQ3 22 
PQ3 "C14'" "C14'" C 0 0 Y N N N N N 38.596 44.099 38.937 6.666  2.144  0.896  "C14'" PQ3 23 
PQ3 C11    C11    C 0 1 Y N N N N N 41.799 42.208 33.692 -5.417 4.700  -0.191 C11    PQ3 24 
PQ3 "C11'" "C11'" C 0 0 Y N N N N N 38.208 45.241 41.450 5.489  4.266  -0.489 "C11'" PQ3 25 
PQ3 "C13'" "C13'" C 0 0 Y N N N N N 39.547 43.918 39.940 7.318  3.330  0.748  "C13'" PQ3 26 
PQ3 "C12'" "C12'" C 0 0 Y N N N N N 39.357 44.497 41.193 6.729  4.387  0.058  "C12'" PQ3 27 
PQ3 C14    C14    C 0 1 Y N N N N N 40.505 43.870 35.515 -3.056 4.520  1.293  C14    PQ3 28 
PQ3 C7     C7     C 0 1 Y N N N N N 38.089 43.877 32.740 -3.473 1.046  0.121  C7     PQ3 29 
PQ3 C8     C8     C 0 1 Y N N N N N 38.769 43.041 31.851 -4.657 1.211  -0.608 C8     PQ3 30 
PQ3 C16    C16    C 0 1 Y N N N N N 38.688 44.186 33.955 -2.906 2.133  0.759  C16    PQ3 31 
PQ3 C15    C15    C 0 1 Y N N N N N 39.926 43.626 34.268 -3.564 3.373  0.662  C15    PQ3 32 
PQ3 C10    C10    C 0 1 Y N N N N N 40.583 42.807 33.335 -4.763 3.459  -0.090 C10    PQ3 33 
PQ3 "C9'"  "C9'"  C 0 1 N N N N N N 35.553 46.211 42.095 2.961  4.035  -1.610 "C9'"  PQ3 34 
PQ3 N1     N1     N 0 1 Y N N N N N 34.247 45.480 32.490 -1.633 -2.729 0.101  N1     PQ3 35 
PQ3 N2     N2     N 0 1 N N N N N N 36.785 44.404 32.446 -2.857 -0.207 0.188  N2     PQ3 36 
PQ3 "N3'"  "N3'"  N 1 1 Y N N N N N 36.064 46.070 40.724 3.564  2.912  -0.887 "N3'"  PQ3 37 
PQ3 "N2'"  "N2'"  N 0 1 N N N N N N 34.483 46.132 37.335 2.684  -0.495 0.006  "N2'"  PQ3 38 
PQ3 "N1'"  "N1'"  N 0 1 Y N N N N N 33.083 46.358 34.936 1.203  -2.876 0.009  "N1'"  PQ3 39 
PQ3 N3     N3     N 1 1 Y N N N N N 40.045 42.620 32.085 -5.255 2.373  -0.694 N3     PQ3 40 
PQ3 "O1'"  "O1'"  O 0 1 N N N N N N 32.725 46.946 38.463 4.527  -1.733 -0.076 "O1'"  PQ3 41 
PQ3 O1     O1     O 0 1 N N N N N N 36.742 44.240 30.214 -4.818 -1.247 0.231  O1     PQ3 42 
PQ3 HH     HH     H 0 1 N N N N N N 34.558 45.039 29.149 -4.821 -3.730 0.188  HH     PQ3 43 
PQ3 HJ     HJ     H 0 1 N N N N N N 32.202 45.807 29.215 -3.744 -5.944 0.108  HJ     PQ3 44 
PQ3 HK     HK     H 0 1 N N N N N N 30.337 46.584 30.448 -1.654 -7.259 0.016  HK     PQ3 45 
PQ3 HI1    HI1    H 0 1 N N N N N N 41.838 41.814 31.318 -7.346 2.293  -0.822 HI1    PQ3 46 
PQ3 HI2    HI2    H 0 1 N N N N N N 40.336 41.234 30.521 -6.570 3.489  -1.887 HI2    PQ3 47 
PQ3 HI3    HI3    H 0 1 N N N N N N 40.943 42.893 30.196 -6.479 1.755  -2.281 HI3    PQ3 48 
PQ3 HE     HE     H 0 1 N N N N N N 42.148 43.441 36.831 -3.330 6.584  1.663  HE     PQ3 49 
PQ3 "HK'"  "HK'"  H 0 1 N N N N N N 29.311 47.304 32.572 0.749  -7.384 -0.062 "HK'"  PQ3 50 
PQ3 "HJ'"  "HJ'"  H 0 1 N N N N N N 29.440 47.677 34.914 2.966  -6.293 -0.112 "HJ'"  PQ3 51 
PQ3 "HH'"  "HH'"  H 0 1 N N N N N N 30.716 47.545 37.036 4.269  -4.202 -0.115 "HH'"  PQ3 52 
PQ3 HF     HF     H 0 1 N N N N N N 43.273 41.934 35.228 -5.403 6.741  0.354  HF     PQ3 53 
PQ3 "HB'"  "HB'"  H 0 1 N N N N N N 36.653 44.602 37.199 5.107  -0.066 1.006  "HB'"  PQ3 54 
PQ3 "HC'"  "HC'"  H 0 1 N N N N N N 34.489 47.168 39.844 1.913  1.718  -1.215 "HC'"  PQ3 55 
PQ3 "HD'"  "HD'"  H 0 1 N N N N N N 38.745 43.649 37.967 7.131  1.331  1.434  "HD'"  PQ3 56 
PQ3 HG     HG     H 0 1 N N N N N N 42.313 41.576 32.983 -6.329 4.786  -0.762 HG     PQ3 57 
PQ3 "HG'"  "HG'"  H 0 1 N N N N N N 38.064 45.687 42.423 5.048  5.095  -1.022 "HG'"  PQ3 58 
PQ3 "HE'"  "HE'"  H 0 1 N N N N N N 40.431 43.329 39.746 8.303  3.453  1.172  "HE'"  PQ3 59 
PQ3 "HF'"  "HF'"  H 0 1 N N N N N N 40.101 44.369 41.965 7.267  5.318  -0.046 "HF'"  PQ3 60 
PQ3 HD     HD     H 0 1 N N N N N N 40.017 44.533 36.214 -2.143 4.464  1.867  HD     PQ3 61 
PQ3 HC     HC     H 0 1 N N N N N N 38.269 42.718 30.950 -5.088 0.358  -1.112 HC     PQ3 62 
PQ3 HB     HB     H 0 1 N N N N N N 38.200 44.853 34.650 -1.993 2.031  1.327  HB     PQ3 63 
PQ3 "HI2'" "HI2'" H 0 0 N N N N N N 36.320 45.876 42.809 3.231  3.974  -2.664 "HI2'" PQ3 64 
PQ3 "HI3'" "HI3'" H 0 0 N N N N N N 35.308 47.266 42.288 1.877  3.991  -1.509 "HI3'" PQ3 65 
PQ3 "HI1'" "HI1'" H 0 0 N N N N N N 34.648 45.597 42.214 3.327  4.973  -1.195 "HI1'" PQ3 66 
PQ3 HA     HA     H 0 1 N N N N N N 36.246 44.690 33.238 -1.890 -0.271 0.232  HA     PQ3 67 
PQ3 "HA'"  "HA'"  H 0 1 N N N N N N 34.810 45.911 36.416 1.720  -0.459 0.104  "HA'"  PQ3 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PQ3 C4     C3     DOUB Y N 1  
PQ3 C4     C5     SING Y N 2  
PQ3 C3     C2     SING Y N 3  
PQ3 O1     C6     DOUB N N 4  
PQ3 C9     N3     SING N N 5  
PQ3 C6     C5     SING N N 6  
PQ3 C6     N2     SING N N 7  
PQ3 C5     N1     DOUB Y N 8  
PQ3 C2     C1     DOUB Y N 9  
PQ3 C2     C17    SING Y N 10 
PQ3 C1     "C1'"  SING Y N 11 
PQ3 C8     N3     DOUB Y N 12 
PQ3 C8     C7     SING Y N 13 
PQ3 N3     C10    SING Y N 14 
PQ3 N2     C7     SING N N 15 
PQ3 N1     C17    SING Y N 16 
PQ3 C17    "C17'" DOUB Y N 17 
PQ3 "C1'"  "C2'"  DOUB Y N 18 
PQ3 C7     C16    DOUB Y N 19 
PQ3 C10    C11    DOUB Y N 20 
PQ3 C10    C15    SING Y N 21 
PQ3 C11    C12    SING Y N 22 
PQ3 "C2'"  "C17'" SING Y N 23 
PQ3 "C2'"  "C3'"  SING Y N 24 
PQ3 "C17'" "N1'"  SING Y N 25 
PQ3 C16    C15    SING Y N 26 
PQ3 C15    C14    DOUB Y N 27 
PQ3 "C3'"  "C4'"  DOUB Y N 28 
PQ3 "N1'"  "C5'"  DOUB Y N 29 
PQ3 C12    C13    DOUB Y N 30 
PQ3 C14    C13    SING Y N 31 
PQ3 "C5'"  "C4'"  SING Y N 32 
PQ3 "C5'"  "C6'"  SING N N 33 
PQ3 "N2'"  "C6'"  SING N N 34 
PQ3 "N2'"  "C7'"  SING N N 35 
PQ3 "C6'"  "O1'"  DOUB N N 36 
PQ3 "C16'" "C7'"  DOUB Y N 37 
PQ3 "C16'" "C15'" SING Y N 38 
PQ3 "C7'"  "C8'"  SING Y N 39 
PQ3 "C14'" "C15'" DOUB Y N 40 
PQ3 "C14'" "C13'" SING Y N 41 
PQ3 "C15'" "C10'" SING Y N 42 
PQ3 "C8'"  "N3'"  DOUB Y N 43 
PQ3 "C13'" "C12'" DOUB Y N 44 
PQ3 "C10'" "N3'"  SING Y N 45 
PQ3 "C10'" "C11'" DOUB Y N 46 
PQ3 "N3'"  "C9'"  SING N N 47 
PQ3 "C12'" "C11'" SING Y N 48 
PQ3 C4     HH     SING N N 49 
PQ3 C3     HJ     SING N N 50 
PQ3 C1     HK     SING N N 51 
PQ3 C9     HI1    SING N N 52 
PQ3 C9     HI2    SING N N 53 
PQ3 C9     HI3    SING N N 54 
PQ3 C13    HE     SING N N 55 
PQ3 "C1'"  "HK'"  SING N N 56 
PQ3 "C3'"  "HJ'"  SING N N 57 
PQ3 "C4'"  "HH'"  SING N N 58 
PQ3 C12    HF     SING N N 59 
PQ3 "C16'" "HB'"  SING N N 60 
PQ3 "C8'"  "HC'"  SING N N 61 
PQ3 "C14'" "HD'"  SING N N 62 
PQ3 C11    HG     SING N N 63 
PQ3 "C11'" "HG'"  SING N N 64 
PQ3 "C13'" "HE'"  SING N N 65 
PQ3 "C12'" "HF'"  SING N N 66 
PQ3 C14    HD     SING N N 67 
PQ3 C8     HC     SING N N 68 
PQ3 C16    HB     SING N N 69 
PQ3 "C9'"  "HI2'" SING N N 70 
PQ3 "C9'"  "HI3'" SING N N 71 
PQ3 "C9'"  "HI1'" SING N N 72 
PQ3 N2     HA     SING N N 73 
PQ3 "N2'"  "HA'"  SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PQ3 SMILES           ACDLabs              12.01 "C[n+]1cc(cc2ccccc21)NC(=O)c1nc2c(cc1)ccc1ccc(nc12)C(=O)Nc1cc2ccccc2[n+](C)c1"                                                                                                    
PQ3 InChI            InChI                1.06  "InChI=1S/C34H24N6O2/c1-39-19-25(17-23-7-3-5-9-29(23)39)35-33(41)27-15-13-21-11-12-22-14-16-28(38-32(22)31(21)37-27)34(42)36-26-18-24-8-4-6-10-30(24)40(2)20-26/h3-20H,1-2H3/p+2" 
PQ3 InChIKey         InChI                1.06  CTOLNXAGCUTHBW-UHFFFAOYSA-P                                                                                                                                                       
PQ3 SMILES_CANONICAL CACTVS               3.385 "C[n+]1cc(NC(=O)c2ccc3ccc4ccc(nc4c3n2)C(=O)Nc5cc6ccccc6[n+](C)c5)cc7ccccc17"                                                                                                      
PQ3 SMILES           CACTVS               3.385 "C[n+]1cc(NC(=O)c2ccc3ccc4ccc(nc4c3n2)C(=O)Nc5cc6ccccc6[n+](C)c5)cc7ccccc17"                                                                                                      
PQ3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[n+]1cc(cc2c1cccc2)NC(=O)c3ccc4ccc5ccc(nc5c4n3)C(=O)Nc6cc7ccccc7[n+](c6)C"                                                                                                      
PQ3 SMILES           "OpenEye OEToolkits" 2.0.7 "C[n+]1cc(cc2c1cccc2)NC(=O)c3ccc4ccc5ccc(nc5c4n3)C(=O)Nc6cc7ccccc7[n+](c6)C"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PQ3 "SYSTEMATIC NAME" ACDLabs              12.01 "3,3'-[1,10-phenanthroline-2,9-diylbis(carbonylazanediyl)]bis(1-methylquinolin-1-ium)" 
PQ3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}2,~{N}9-bis(1-methylquinolin-1-ium-3-yl)-1,10-phenanthroline-2,9-dicarboxamide"   
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      PQ3 
_pdbx_chem_comp_synonyms.name         Phen-DC3 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PQ3 "Create component"   2013-11-13 RCSB 
PQ3 "Initial release"    2014-01-22 RCSB 
PQ3 "Modify synonyms"    2020-06-05 PDBE 
PQ3 "Other modification" 2024-05-08 RCSB 
# 
