data_P53
#

_chem_comp.id                                   P53
_chem_comp.name                                 "2-(hydroxymethyl)phenyl 6-O-phosphono-beta-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C13 H19 O10 P"
_chem_comp.mon_nstd_parent_comp_id              BGC
_chem_comp.pdbx_synonyms                        
;Salicin-6-phosphate; 2-(hydroxymethyl)phenyl 6-O-phosphono-beta-D-glucoside; 2-(hydroxymethyl)phenyl
6-O-phosphono-D-glucoside; 2-(hydroxymethyl)phenyl 6-O-phosphono-glucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-06-01
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       366.258
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P53
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4F79
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  P53  Salicin-6-phosphate                                       PDB  ?  
2  P53  "2-(hydroxymethyl)phenyl 6-O-phosphono-beta-D-glucoside"  PDB  ?  
3  P53  "2-(hydroxymethyl)phenyl 6-O-phosphono-D-glucoside"       PDB  ?  
4  P53  "2-(hydroxymethyl)phenyl 6-O-phosphono-glucoside"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P53  P     P     P  0  1  N  N  N  37.465   2.929  10.981  -3.652  -1.794  -0.218  P     P53   1  
P53  C1A   C1    C  0  1  Y  N  N  34.777   4.915   6.843   3.631  -2.795   0.262  C1A   P53   2  
P53  C2A   C2    C  0  1  Y  N  N  35.913   4.127   6.746   2.685  -3.350   1.105  C2A   P53   3  
P53  C4A   C4    C  0  1  Y  N  N  35.913   2.823   7.233   1.607  -2.596   1.530  C4A   P53   4  
P53  C6A   C6    C  0  1  Y  N  N  34.756   2.308   7.833   1.472  -1.286   1.113  C6A   P53   5  
P53  O6    O6    O  0  1  N  N  N  35.951   3.013  10.590  -2.508  -0.738   0.189  O6    P53   6  
P53  C8    C8    C  0  1  Y  N  N  33.617   3.098   7.951   2.419  -0.727   0.268  C8    P53   7  
P53  C10   C10   C  0  1  Y  N  N  33.621   4.408   7.435   3.500  -1.485  -0.157  C10   P53   8  
P53  C13   C13   C  0  1  N  N  N  32.402   5.272   7.539   4.534  -0.879  -1.070  C13   P53   9  
P53  O15   O15   O  0  1  N  N  N  31.626   5.517   6.442   5.543  -1.850  -1.358  O15   P53  10  
P53  O1    O17   O  0  1  N  N  N  32.405   2.592   8.520   2.289   0.562  -0.142  O1    P53  11  
P53  C1    C19   C  0  1  N  N  S  32.402   1.900   9.685   1.151   1.283   0.335  C1    P53  12  
P53  O1P   O1P   O  0  1  N  N  N  37.729   4.128  11.880  -3.517  -2.156  -1.781  O1P   P53  13  
P53  C2    C21   C  0  1  N  N  R  32.768   0.421   9.463   1.238   2.740  -0.128  C2    P53  14  
P53  C3    C23   C  0  1  N  N  S  33.312  -0.188  10.639  -0.013   3.491   0.336  C3    P53  15  
P53  C4    C25   C  0  1  N  N  S  34.444   0.580  11.029  -1.255   2.780  -0.212  C4    P53  16  
P53  C5    C27   C  0  1  N  N  R  33.982   1.930  11.550  -1.245   1.322   0.255  C5    P53  17  
P53  O5    O29   O  0  1  N  N  N  33.049   2.629  10.693  -0.041   0.690  -0.184  O5    P53  18  
P53  O2P   O2P   O  0  1  N  N  N  37.624   1.647  11.764  -3.483  -3.134   0.660  O2P   P53  19  
P53  O2    O32   O  0  1  N  N  N  31.611  -0.288   9.089   2.400   3.351   0.437  O2    P53  20  
P53  O3    O34   O  0  1  N  N  N  33.595  -1.619  10.362   0.025   4.832  -0.154  O3    P53  21  
P53  O4    O36   O  0  1  N  N  N  35.258  -0.104  12.023  -2.431   3.430   0.275  O4    P53  22  
P53  C6    C38   C  0  1  N  N  N  35.105   2.854  11.698  -2.451   0.589  -0.338  C6    P53  23  
P53  O3P   O3P   O  0  1  N  N  N  38.393   2.928   9.758  -4.984  -1.202   0.038  O3P   P53  24  
P53  H1A   H1    H  0  1  N  N  N  34.787   5.924   6.459   4.474  -3.385  -0.064  H1A   P53  25  
P53  H2A   H2    H  0  1  N  N  N  36.806   4.528   6.289   2.789  -4.375   1.431  H2A   P53  26  
P53  H4A   H4    H  0  1  N  N  N  36.799   2.212   7.149   0.869  -3.032   2.188  H4A   P53  27  
P53  H6    H6    H  0  1  N  N  N  34.749   1.294   8.205   0.629  -0.698   1.445  H6    P53  28  
P53  H13   H13   H  0  1  N  N  N  31.748   4.803   8.289   4.058  -0.563  -1.998  H13   P53  29  
P53  H1    H19   H  0  1  N  N  N  31.348   1.860   9.998   1.130   1.248   1.424  H1    P53  30  
P53  HO1P  HO1P  H  0  0  N  N  N  38.427   4.655  11.509  -2.667  -2.550  -2.021  HO1P  P53  31  
P53  H2    H21   H  0  1  N  N  N  33.510   0.374   8.652   1.301   2.773  -1.216  H2    P53  32  
P53  H3    H23   H  0  1  N  N  N  32.559  -0.140  11.440  -0.049   3.500   1.426  H3    P53  33  
P53  H4    H25   H  0  1  N  N  N  35.067   0.765  10.142  -1.243   2.814  -1.301  H4    P53  34  
P53  H5    H27   H  0  1  N  N  N  33.517   1.775  12.535  -1.298   1.288   1.343  H5    P53  35  
P53  HO2P  HO2P  H  0  0  N  N  N  38.270   1.094  11.340  -4.141  -3.816   0.467  HO2P  P53  36  
P53  HO2   HO32  H  0  1  N  Y  N  31.830  -1.202   8.950   3.230   2.923   0.188  HO2   P53  37  
P53  HO3   HO34  H  0  1  N  Y  N  33.956  -2.027  11.140   0.791   5.340   0.148  HO3   P53  38  
P53  HO4   HO36  H  0  1  N  Y  N  36.000   0.441  12.255  -2.500   4.360   0.021  HO4   P53  39  
P53  H61   H38   H  0  1  N  N  N  35.721   2.496  12.536  -2.352   0.546  -1.422  H61   P53  40  
P53  H62   H38A  H  0  1  N  N  N  34.691   3.843  11.943  -3.365   1.123  -0.077  H62   P53  41  
P53  H18   H18   H  0  1  N  N  N  32.741   6.251   7.909   4.989  -0.017  -0.582  H18   P53  42  
P53  H191  H191  H  0  0  N  N  N  30.900   6.079   6.686   6.243  -1.528  -1.942  H191  P53  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P53  P    O2P   SING  N  N   1  
P53  P    O1P   SING  N  N   2  
P53  C1A  C10   SING  Y  N   3  
P53  C1A  H1A   SING  N  N   4  
P53  C2A  C1A   DOUB  Y  N   5  
P53  C2A  C4A   SING  Y  N   6  
P53  C2A  H2A   SING  N  N   7  
P53  C4A  C6A   DOUB  Y  N   8  
P53  C4A  H4A   SING  N  N   9  
P53  C6A  C8    SING  Y  N  10  
P53  C6A  H6    SING  N  N  11  
P53  O6   P     SING  N  N  12  
P53  O6   C6    SING  N  N  13  
P53  C8   O1    SING  N  N  14  
P53  C10  C8    DOUB  Y  N  15  
P53  C10  C13   SING  N  N  16  
P53  C13  H13   SING  N  N  17  
P53  O15  C13   SING  N  N  18  
P53  O1   C1    SING  N  N  19  
P53  C1   O5    SING  N  N  20  
P53  C1   H1    SING  N  N  21  
P53  O1P  HO1P  SING  N  N  22  
P53  C2   C1    SING  N  N  23  
P53  C2   C3    SING  N  N  24  
P53  C2   H2    SING  N  N  25  
P53  C3   C4    SING  N  N  26  
P53  C3   H3    SING  N  N  27  
P53  C4   C5    SING  N  N  28  
P53  C4   O4    SING  N  N  29  
P53  C4   H4    SING  N  N  30  
P53  C5   C6    SING  N  N  31  
P53  C5   H5    SING  N  N  32  
P53  O5   C5    SING  N  N  33  
P53  O2P  HO2P  SING  N  N  34  
P53  O2   C2    SING  N  N  35  
P53  O2   HO2   SING  N  N  36  
P53  O3   C3    SING  N  N  37  
P53  O3   HO3   SING  N  N  38  
P53  O4   HO4   SING  N  N  39  
P53  C6   H61   SING  N  N  40  
P53  C6   H62   SING  N  N  41  
P53  O3P  P     DOUB  N  N  42  
P53  C13  H18   SING  N  N  43  
P53  O15  H191  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P53  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC2OC(Oc1c(cccc1)CO)C(O)C(O)C2O"  
P53  InChI             InChI                 1.03   "InChI=1S/C13H19O10P/c14-5-7-3-1-2-4-8(7)22-13-12(17)11(16)10(15)9(23-13)6-21-24(18,19)20/h1-4,9-17H,5-6H2,(H2,18,19,20)/t9-,10-,11+,12-,13-/m1/s1"  
P53  InChIKey          InChI                 1.03   FSJKOMDYZYBBLV-UJPOAAIJSA-N  
P53  SMILES_CANONICAL  CACTVS                3.370  "OCc1ccccc1O[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@H]2O"  
P53  SMILES            CACTVS                3.370  "OCc1ccccc1O[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH]2O"  
P53  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1ccc(c(c1)CO)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)O"  
P53  SMILES            "OpenEye OEToolkits"  1.7.6  "c1ccc(c(c1)CO)OC2C(C(C(C(O2)COP(=O)(O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P53  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-(hydroxymethyl)phenyl 6-O-phosphono-beta-D-glucopyranoside"  
P53  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[(2R,3S,4S,5R,6S)-6-[2-(hydroxymethyl)phenoxy]-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dihydrogen phosphate"  
#
_pdbx_chem_comp_related.comp_id            P53
_pdbx_chem_comp_related.related_comp_id    BGC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  P53  C1   BGC  C1   "Carbohydrate core"  
 2  P53  C2   BGC  C2   "Carbohydrate core"  
 3  P53  C3   BGC  C3   "Carbohydrate core"  
 4  P53  C4   BGC  C4   "Carbohydrate core"  
 5  P53  C5   BGC  C5   "Carbohydrate core"  
 6  P53  C6   BGC  C6   "Carbohydrate core"  
 7  P53  O1   BGC  O1   "Carbohydrate core"  
 8  P53  O5   BGC  O5   "Carbohydrate core"  
 9  P53  O2   BGC  O2   "Carbohydrate core"  
10  P53  O3   BGC  O3   "Carbohydrate core"  
11  P53  O4   BGC  O4   "Carbohydrate core"  
12  P53  O6   BGC  O6   "Carbohydrate core"  
13  P53  H1   BGC  H1   "Carbohydrate core"  
14  P53  H2   BGC  H2   "Carbohydrate core"  
15  P53  H3   BGC  H3   "Carbohydrate core"  
16  P53  H4   BGC  H4   "Carbohydrate core"  
17  P53  H5   BGC  H5   "Carbohydrate core"  
18  P53  H61  BGC  H61  "Carbohydrate core"  
19  P53  H62  BGC  H62  "Carbohydrate core"  
20  P53  HO2  BGC  HO2  "Carbohydrate core"  
21  P53  HO3  BGC  HO3  "Carbohydrate core"  
22  P53  HO4  BGC  HO4  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
P53  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
P53  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
P53  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
P53  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P53  "Create component"          2012-06-01  RCSB  
P53  "Other modification"        2020-07-03  RCSB  
P53  "Modify parent residue"     2020-07-17  RCSB  
P53  "Modify synonyms"           2020-07-17  RCSB  
P53  "Modify linking type"       2020-07-17  RCSB  
P53  "Modify atom id"            2020-07-17  RCSB  
P53  "Modify component atom id"  2020-07-17  RCSB  
P53  "Modify leaving atom flag"  2020-07-17  RCSB  
##
